Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s1490 Capsella rubella HOM05D009851 ORTHO05D008654 4.4e-97 358.2 217 100.0
AL3G27640 Arabidopsis lyrata HOM05D009851 ORTHO05D008654 1.9e-71 273.1 228 69.7
CARHR090230 Cardamine hirsuta HOM05D009851 ORTHO05D008654 2.3e-69 266.2 215 70.2
AT3G15250 Arabidopsis thaliana HOM05D009851 ORTHO05D008654 8.1e-67 257.7 229 69.4
Sp3g13450 Schrenkiella parvula HOM05D009851 ORTHO05D008654 1.3e-61 240.4 217 73.7
Thhalv10021913m.g Eutrema salsugineum HOM05D009851 ORTHO05D008654 3.0e-53 212.6 217 64.1
BcaB06g29548 Brassica carinata HOM05D009851 ORTHO05D008654 2.8e-51 206.1 218 64.2
BcaB06g29549 Brassica carinata HOM05D009851 ORTHO05D008654 8.7e-45 184.5 218 61.9
A05p34230 Brassica napus HOM05D009851 ORTHO05D008654 9.0e-42 174.5 215 59.5
C05p51990 Brassica napus HOM05D009851 ORTHO05D008654 9.0e-42 174.5 219 57.1
BraA05t22243Z Brassica rapa HOM05D009851 ORTHO05D008654 2.6e-41 172.9 208 60.1
BolC5t33884H Brassica oleracea HOM05D009851 ORTHO05D008654 9.9e-41 171.0 219 56.2
THA.LOC104810461 Tarenaya hassleriana HOM05D009851 ORTHO05D008654 3.0e-29 132.9 256 41.8
AL1G61530 Arabidopsis lyrata HOM05D009851 ORTHO05D008654 5.7e-28 128.6 267 40.1
Carub.0001s4232 Capsella rubella HOM05D009851 ORTHO05D008654 7.4e-28 128.3 271 36.5
AT1G53163 Arabidopsis thaliana HOM05D009851 ORTHO05D008654 1.2e-25 120.9 283 37.8
CARHR043380 Cardamine hirsuta HOM05D009851 ORTHO05D008654 2.9e-24 116.3 255 38.0
A06p01160 Brassica napus HOM05D009851 ORTHO05D008654 3.2e-23 112.8 242 38.0
BcaC08g43508 Brassica carinata HOM05D009851 ORTHO05D008654 4.6e-22 109.0 240 37.9
C06p08940 Brassica napus HOM05D009851 ORTHO05D008654 4.6e-22 109.0 240 37.9
BolC6t35972H Brassica oleracea HOM05D009851 ORTHO05D008654 4.6e-22 109.0 240 37.9
BraA06t23343Z Brassica rapa HOM05D009851 ORTHO05D008654 6.1e-22 108.6 241 37.3
Thhalv10012165m.g Eutrema salsugineum HOM05D009851 ORTHO05D008654 3.9e-21 105.9 275 37.5
Sp1g39710 Schrenkiella parvula HOM05D009851 ORTHO05D008654 1.9e-20 103.6 254 37.4
Ciclev10010505m.g Citrus clementina HOM05D007784 ORTHO05D008654 2.8e-19 99.8 215 48.8
BcaB07g33353 Brassica carinata HOM05D009851 ORTHO05D008654 5.3e-18 95.5 264 36.4
Potri.001G398000 Populus trichocarpa HOM05D007784 ORTHO05D008654 1.3e-16 90.9 227 42.7
Cpa.g.c36086 Carica papaya HOM05D007784 ORTHO05D008654 8.5e-16 88.2 224 45.1
QL08p022546 Quercus lobata HOM05D007784 ORTHO05D008654 1.4e-15 87.4 213 38.5
Sabra16G0260800 Salix brachista HOM05D007784 ORTHO05D008654 4.6e-14 82.4 231 41.1
Cfa020564 Carpinus fangiana HOM05D007784 ORTHO05D008654 1.4e-13 80.9 215 45.1
CiPaw.11G171500 Carya illinoinensis HOM05D007784 ORTHO05D008654 1.4e-13 80.9 217 42.4
PSO541G4378 Papaver somniferum HOM05D007784 ORTHO05D008654 1.4e-13 80.9 229 41.9
Psat4g131560 Pisum sativum HOM05D007784 ORTHO05D008654 1.8e-13 80.5 205 33.7
BcaB03g11679 Brassica carinata HOM05D009851 ORTHO05D008654 3.0e-13 79.7 78 65.4
Potri.011G116600 Populus trichocarpa HOM05D007784 ORTHO05D008654 3.0e-13 79.7 239 40.2
Atru.chr2.2433 Acer truncatum HOM05D007784 ORTHO05D008654 5.1e-13 79.0 246 44.3
Sabra11G0102100 Salix brachista HOM05D007784 ORTHO05D008654 5.1e-13 79.0 247 40.1
CSS0002410 Camellia sinensis var. sinensis HOM05D007784 ORTHO05D008654 1.1e-12 77.8 210 41.4
Duzib213G0720 Durio zibethinus HOM05D007784 ORTHO05D008654 2.0e-12 77.0 217 40.1
CiPaw.12G119800 Carya illinoinensis HOM05D007784 ORTHO05D008654 2.6e-12 76.6 210 44.8
Manes.15G088900 Manihot esculenta HOM05D007784 ORTHO05D008654 3.3e-12 76.3 228 42.1
Thecc.07G095100 Theobroma cacao HOM05D007784 ORTHO05D008654 3.3e-12 76.3 220 36.4
Glyma.12G163035 Glycine max HOM05D007784 ORTHO05D008654 4.4e-12 75.9 236 39.4
Gohir.A01G061700 Gossypium hirsutum HOM05D007784 ORTHO05D008654 4.4e-12 75.9 220 42.7
Gohir.D01G048300 Gossypium hirsutum HOM05D007784 ORTHO05D008654 5.7e-12 75.5 221 42.5
Gorai.002G068100 Gossypium raimondii HOM05D007784 ORTHO05D008654 5.7e-12 75.5 221 42.5
Gohir.D13G151926 Gossypium hirsutum HOM05D007784 ORTHO05D008654 9.7e-12 74.7 217 41.5
COL.COLO4_36703 Corchorus olitorius HOM05D007784 ORTHO05D008654 1.7e-11 73.9 218 39.9
MELO3C025600.2 Cucumis melo HOM05D007784 ORTHO05D008654 6.3e-11 72.0 223 36.3
Lalb_Chr03g0030731 Lupinus albus HOM05D007784 ORTHO05D008654 8.2e-11 71.6 207 38.2
PGR031G1623 Punica granatum HOM05D007784 ORTHO05D008654 4.1e-10 69.3 205 36.6
Haze_09448 Corylus avellana HOM05D007784 ORTHO05D008654 6.9e-10 68.6 66 56.1
Prupe.4G177000 Prunus persica HOM05D007784 ORTHO05D008654 1.2e-09 67.8 217 40.6
ClCG11G017920 Citrullus lanatus HOM05D007784 ORTHO05D008654 1.5e-09 67.4 235 29.4
Lalb_Chr01g0006591 Lupinus albus HOM05D007784 ORTHO05D008654 1.5e-09 67.4 211 36.0
CAN.G162.41 Capsicum annuum HOM05D007784 ORTHO05D008654 2.0e-09 67.0 214 35.0
Aqoxy1G02344 Aquilegia oxysepala HOM05D007784 ORTHO05D008654 3.4e-09 66.2 211 37.0
Aqoxy5G00008 Aquilegia oxysepala HOM05D007784 ORTHO05D008654 3.4e-09 66.2 211 37.0
MSTRG.15239 Avicennia marina HOM05D007784 ORTHO05D008654 5.9e-09 65.5 205 40.5
Glyma.06G238300 Glycine max HOM05D007784 ORTHO05D008654 5.9e-09 65.5 240 39.2
Hma1.2p1_0387F.1_g141980 Hydrangea macrophylla HOM05D007784 ORTHO05D008654 7.7e-09 65.1 220 31.8
Manes.03G106700 Manihot esculenta HOM05D007784 ORTHO05D008654 7.7e-09 65.1 211 38.4
Phvul.011G165000 Phaseolus vulgaris HOM05D007784 ORTHO05D008654 7.7e-09 65.1 216 40.3
VMungo1127G1039 Vigna mungo HOM05D007784 ORTHO05D008654 1.0e-08 64.7 223 31.8
AUR62019455 Chenopodium quinoa HOM05D007784 ORTHO05D008654 1.3e-08 64.3 250 39.2
Actinidia09697 Actinidia chinensis HOM05D007784 ORTHO05D008654 1.7e-08 63.9 198 43.9
CANSAT56G4083 Cannabis sativa HOM05D007784 ORTHO05D008654 1.7e-08 63.9 66 53.0
Sc16g0007130 Simmondsia chinensis HOM05D007784 ORTHO05D008654 2.2e-08 63.5 222 28.8
Lj3g0015921 Lotus japonicus HOM05D007784 ORTHO05D008654 3.8e-08 62.8 216 42.6
Rhsim06G0201400 Rhododendron simsii HOM05D007784 ORTHO05D008654 5.0e-08 62.4 207 43.5
Gorai.013G169700 Gossypium raimondii HOM05D007784 ORTHO05D008654 8.5e-08 61.6 163 45.4
TAR627G0175 Trochodendron aralioides HOM05D007784 ORTHO05D008654 1.1e-07 61.2 237 35.4
Duzib268G0159 Durio zibethinus HOM05D007784 ORTHO05D008654 1.4e-07 60.8 220 38.2
Medtr0598s0020 Medicago truncatula HOM05D007784 ORTHO05D008654 3.2e-07 59.7 151 42.4
TWI38G0880 Tripterygium wilfordii HOM05D007784 ORTHO05D008654 7.2e-07 58.5 207 30.0
Ca_23050_v3 Cicer arietinum L. HOM05D007784 ORTHO05D008654 9.4e-07 58.2 202 35.1
AUR62036175 Chenopodium quinoa HOM05D007784 ORTHO05D008654 1.2e-06 57.8 233 28.8
CsaV3_4G033550 Cucumis sativus L. HOM05D007784 ORTHO05D008654 1.6e-06 57.4 226 37.6
TAR627G0444 Trochodendron aralioides HOM05D007784 ORTHO05D008654 2.1e-06 57.0 237 37.1
EL10Ac4g08222 Beta vulgaris HOM05D007784 ORTHO05D008654 3.6e-06 56.2 244 37.7
MD03G1230800 Malus domestica HOM05D007784 ORTHO05D008654 3.6e-06 56.2 226 36.3
Solyc07g062960.1 Solanum lycopersicum HOM05D007784 ORTHO05D008654 3.6e-06 56.2 223 38.6
Sopen07g031150 Solanum pennellii HOM05D007784 ORTHO05D008654 3.6e-06 56.2 223 38.6
Dinv14932 Davidia involucrata HOM05D007784 ORTHO05D008654 6.1e-06 55.5 64 53.1
FAN21G3158 Fragaria x ananassa HOM05D007784 ORTHO05D008654 7.9e-06 55.1 43 60.5


User provided reference genes

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