Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s1483 Capsella rubella HOM05D005607 ORTHO05D008142 1.5e-289 998.8 520 100.0
AL3G27570 Arabidopsis lyrata HOM05D005607 ORTHO05D008142 5.0e-272 940.6 520 94.2
AT3G15180 Arabidopsis thaliana HOM05D005607 ORTHO05D008142 9.4e-271 936.4 520 93.7
Sp3g13390 Schrenkiella parvula HOM05D005607 ORTHO05D008142 4.5e-249 864.4 520 86.9
BraA05t22250Z Brassica rapa HOM05D005607 ORTHO05D008142 6.5e-248 860.5 520 86.3
Thhalv10020515m.g Eutrema salsugineum HOM05D005607 ORTHO05D008142 8.8e-245 850.1 520 85.6
A05p34290 Brassica napus HOM05D005607 ORTHO05D008142 2.4e-242 842.0 547 81.7
BolC5t33890H Brassica oleracea HOM05D005607 ORTHO05D008142 5.9e-241 837.4 535 82.8
C05p52050 Brassica napus HOM05D005607 ORTHO05D008142 2.9e-240 835.1 546 81.5
BcaB06g29542 Brassica carinata HOM05D005607 ORTHO05D008142 8.3e-235 817.0 520 83.3
Aa31LG8G2380 Aethionema arabicum HOM05D005607 ORTHO05D008142 4.3e-223 778.1 531 78.2
THA.LOC104815562 Tarenaya hassleriana HOM05D005607 ORTHO05D008142 1.4e-213 746.5 520 74.4
Thecc.07G096400 Theobroma cacao HOM05D005607 ORTHO05D008142 7.6e-172 607.8 520 61.7
Gohir.D05G347700 Gossypium hirsutum HOM05D005607 ORTHO05D008142 8.4e-171 604.4 520 61.0
Gorai.009G375500 Gossypium raimondii HOM05D005607 ORTHO05D008142 1.4e-170 603.6 520 61.2
Gohir.A04G035700 Gossypium hirsutum HOM05D005607 ORTHO05D008142 3.5e-169 599.0 520 60.6
Cpa.g.sc131.86 Carica papaya HOM05D005607 ORTHO05D008142 8.7e-168 594.3 520 59.6
TWI38G0301 Tripterygium wilfordii HOM05D005607 ORTHO05D008142 1.5e-167 593.6 521 60.7
Ciclev10007885m.g Citrus clementina HOM05D005607 ORTHO05D008142 2.5e-167 592.8 520 59.4
GSVIVG01014288001 Vitis vinifera HOM05D005607 ORTHO05D008142 7.4e-167 591.3 521 59.5
COL.COLO4_36717 Corchorus olitorius HOM05D005607 ORTHO05D008142 1.6e-166 590.1 520 59.0
CSS0008326 Camellia sinensis var. sinensis HOM05D005607 ORTHO05D008142 1.4e-165 587.0 521 59.1
Potri.001G396500 Populus trichocarpa HOM05D005607 ORTHO05D008142 1.2e-164 583.9 524 60.3
PGR083G1887 Punica granatum HOM05D005607 ORTHO05D008142 7.6e-164 581.3 519 59.2
MELO3C025610.2 Cucumis melo HOM05D005607 ORTHO05D008142 1.0e-163 580.9 521 58.0
CsaV3_4G033450 Cucumis sativus L. HOM05D005607 ORTHO05D008142 1.3e-163 580.5 521 57.6
arahy.Tifrunner.gnm1.ann1.K8QLTQ Arachis hypogaea HOM05D005607 ORTHO05D008142 8.4e-163 577.8 523 58.3
Cfa020607 Carpinus fangiana HOM05D005607 ORTHO05D008142 8.4e-163 577.8 521 59.3
MD03G1232700 Malus domestica HOM05D005607 ORTHO05D008142 2.1e-161 573.2 521 58.7
Sabra16G0259600 Salix brachista HOM05D005607 ORTHO05D008142 3.5e-161 572.4 524 59.0
CiPaw.11G167700 Carya illinoinensis HOM05D005607 ORTHO05D008142 2.3e-160 569.7 521 57.8
RcHm_v2.0_Chr5g0032701 Rosa chinensis HOM05D005607 ORTHO05D008142 2.3e-160 569.7 521 59.3
Atru.chr2.2407 Acer truncatum HOM05D005607 ORTHO05D008142 5.1e-160 568.5 520 58.1
Prupe.4G175900 Prunus persica HOM05D005607 ORTHO05D008142 5.1e-160 568.5 521 58.7
Eucgr.F01169 Eucalyptus grandis HOM05D005607 ORTHO05D008142 6.7e-160 568.2 521 57.0
ClCG11G017810 Citrullus lanatus HOM05D005607 ORTHO05D008142 2.5e-159 566.2 535 56.4
Manes.03G105800 Manihot esculenta HOM05D005607 ORTHO05D008142 3.3e-159 565.8 521 56.6
Sed0013999 Sechium edule HOM05D005607 ORTHO05D008142 7.4e-159 564.7 521 56.0
Duzib213G0871 Durio zibethinus HOM05D005607 ORTHO05D008142 1.3e-158 563.9 482 61.0
Lalb_Chr19g0134061 Lupinus albus HOM05D005607 ORTHO05D008142 3.7e-158 562.4 525 58.7
arahy.Tifrunner.gnm1.ann1.3D346W Arachis hypogaea HOM05D005607 ORTHO05D008142 1.8e-157 560.1 524 57.3
Lj3g0025006 Lotus japonicus HOM05D005607 ORTHO05D008142 1.8e-157 560.1 524 57.3
Glyma.06G236100 Glycine max HOM05D005607 ORTHO05D008142 1.2e-156 557.4 526 57.2
Rhsim06G0202700 Rhododendron simsii HOM05D005607 ORTHO05D008142 2.6e-156 556.2 534 56.2
Dinv20204 Davidia involucrata HOM05D005607 ORTHO05D008142 1.0e-155 554.3 519 57.6
MSTRG.12893 Avicennia marina HOM05D005607 ORTHO05D008142 1.3e-155 553.9 519 56.1
FvH4_3g19420 Fragaria vesca HOM05D005607 ORTHO05D008142 1.4e-154 550.4 521 56.8
Actinidia31524 Actinidia chinensis HOM05D005607 ORTHO05D008142 3.6e-153 545.8 521 56.8
Sc16g0007180 Simmondsia chinensis HOM05D005607 ORTHO05D008142 6.1e-153 545.0 521 54.3
Ca_23036_v3 Cicer arietinum L. HOM05D005607 ORTHO05D008142 7.9e-153 544.7 524 55.9
TPR.G28174 Trifolium pratense HOM05D005607 ORTHO05D008142 1.1e-151 540.8 525 56.0
vmacro11890 Vaccinium macrocarpon HOM05D005607 ORTHO05D008142 5.7e-151 538.5 543 54.1
CANSAT35G0745 Cannabis sativa HOM05D005607 ORTHO05D008142 1.3e-150 537.3 522 55.4
vmacro23190 Vaccinium macrocarpon HOM05D005607 ORTHO05D008142 2.2e-150 536.6 543 54.0
Medtr8g058790 Medicago truncatula HOM05D005607 ORTHO05D008142 9.1e-149 531.2 520 56.0
Medtr8g061280 Medicago truncatula HOM05D005607 ORTHO05D008142 9.1e-149 531.2 520 56.0
CSS0003695 Camellia sinensis var. sinensis HOM05D005607 ORTHO05D008142 2.0e-148 530.0 533 54.6
FAN16G0865 Fragaria x ananassa HOM05D005607 ORTHO05D008142 2.0e-148 530.0 535 55.5
Nitab4.5_0002330g0110 Nicotiana tabacum HOM05D005607 ORTHO05D008142 2.0e-148 530.0 519 54.3
Nn1g04204 Nelumbo nucifera HOM05D005607 ORTHO05D008142 3.4e-148 529.3 521 55.1
PSO210G5410 Papaver somniferum HOM05D005607 ORTHO05D008142 3.4e-148 529.3 520 54.6
Nitab4.5_0008275g0010 Nicotiana tabacum HOM05D005607 ORTHO05D008142 5.9e-148 528.5 519 54.1
PSO832G0774 Papaver somniferum HOM05D005607 ORTHO05D008142 1.0e-147 527.7 520 54.0
CAN.G162.36 Capsicum annuum HOM05D005607 ORTHO05D008142 3.2e-146 522.7 519 53.6
Cc05_g11730 Coffea canephora HOM05D005607 ORTHO05D008142 2.7e-145 519.6 515 54.4
Haze_09409 Corylus avellana HOM05D005607 ORTHO05D008142 7.9e-145 518.1 563 51.7
HanXRQChr15g0495421 Helianthus annuus HOM05D005607 ORTHO05D008142 1.4e-144 517.3 522 53.3
Sopen07g031060 Solanum pennellii HOM05D005607 ORTHO05D008142 3.9e-144 515.8 519 52.8
MD11G1253400 Malus domestica HOM05D005607 ORTHO05D008142 9.1e-141 504.6 460 58.7
ECA236G2999 Erigeron canadensis HOM05D005607 ORTHO05D008142 3.5e-140 502.7 520 52.7
Eucgr.F00890 Eucalyptus grandis HOM05D005607 ORTHO05D008142 3.5e-140 502.7 520 52.3
Lsat_1_v5_gn_7_104480 Lactuca sativa HOM05D005607 ORTHO05D008142 4.5e-140 502.3 521 52.6
EL10Ac4g08241 Beta vulgaris HOM05D005607 ORTHO05D008142 5.9e-140 501.9 515 52.8
VMungo1127G0827 Vigna mungo HOM05D005607 ORTHO05D008142 7.7e-140 501.5 525 53.0
Eucgr.F01141 Eucalyptus grandis HOM05D005607 ORTHO05D008142 1.3e-139 500.7 520 52.5
Oeu005401.4 Olea europaea HOM05D005607 ORTHO05D008142 1.1e-138 497.7 633 46.6
SGA_v2.0_scaffold130G34350 Striga asiatica HOM05D005607 ORTHO05D008142 8.0e-137 491.5 567 49.7
ATR0737G117 Amborella trichopoda HOM05D005607 ORTHO05D008142 3.0e-136 489.6 518 51.5
Ah.06g184600 Amaranthus hybridus HOM05D005607 ORTHO05D008142 4.0e-136 489.2 519 51.6
DCAR_017123 Daucus carota HOM05D005607 ORTHO05D008142 1.1e-135 487.6 557 51.0
Duzib170G0139 Durio zibethinus HOM05D005607 ORTHO05D008142 5.0e-131 472.2 520 51.7
Aqoxy4G00691 Aquilegia oxysepala HOM05D005607 ORTHO05D008142 3.0e-128 463.0 457 53.8
CDE10G0361 Ceratophyllum demersum HOM05D005607 ORTHO05D008142 2.6e-127 459.9 518 49.0
Psat7g207160 Pisum sativum HOM05D005607 ORTHO05D008142 7.2e-122 441.8 423 56.5
Migut.H01958 Erythranthe guttata HOM05D005607 ORTHO05D008142 3.6e-121 439.5 441 53.3
Phvul.011G160300 Phaseolus vulgaris HOM05D005607 ORTHO05D008142 1.6e-116 424.1 450 53.6
Zm00001eb295460 Zea mays HOM05D005607 ORTHO05D008142 1.1e-114 417.9 519 43.2
Lj1A839T37 Lonicera japonica HOM05D005607 ORTHO05D008142 7.5e-111 405.2 389 56.8
Os05g0557200 Oryza sativa ssp. japonica HOM05D005607 ORTHO05D008142 3.7e-110 402.9 519 42.2
Hund02235 Selenicereus undatus HOM05D005607 ORTHO05D008142 7.8e-108 395.2 412 53.2
Lj1A839T35 Lonicera japonica HOM05D005607 ORTHO05D008142 5.8e-103 379.0 407 53.6
CARHR090160 Cardamine hirsuta HOM05D005607 ORTHO05D008142 5.6e-98 362.5 229 83.8
AUR62019473 Chenopodium quinoa HOM05D005607 ORTHO05D008142 3.6e-97 359.8 548 41.2
AUR62036159 Chenopodium quinoa HOM05D005607 ORTHO05D008142 4.0e-96 356.3 518 42.1
AagrBONN_evm.TU.Sc2ySwM_344.1287 Anthoceros agrestis HOM05D005607 ORTHO05D008142 2.4e-85 320.5 514 37.4
Peaxi162Scf00069g01839 Petunia axillaris HOM05D005607 ORTHO05D008142 1.2e-84 318.2 322 53.4
Solyc07g062860.3 Solanum lycopersicum HOM05D005607 ORTHO05D008142 4.7e-81 306.2 322 51.2
unitig_749.g13531 Utricularia gibba HOM05D005607 ORTHO05D008142 9.3e-77 292.0 370 45.7
SalBow7G3213 Salvia bowleyana HOM05D005607 ORTHO05D008142 1.2e-76 291.6 290 53.4
SalBow7G3521 Salvia bowleyana HOM05D005607 ORTHO05D008142 1.2e-76 291.6 290 53.4
Pp3c1_12630 Physcomitrium patens HOM05D005607 ORTHO05D008142 5.8e-71 272.7 513 33.9
MBI06_g04182_MAGBIO Magnolia biondii HOM05D005607 ORTHO05D008142 7.9e-68 262.3 342 46.5
SMO139G0024 Selaginella moellendorffii HOM05D005607 ORTHO05D008142 5.6e-66 256.1 526 34.4
QL08p023962 Quercus lobata HOM05D005607 ORTHO05D008142 1.4e-64 251.5 241 55.2
FAN11G3919 Fragaria x ananassa HOM05D005607 ORTHO05D008142 1.6e-60 238.0 264 51.1
QL08p023973 Quercus lobata HOM05D005607 ORTHO05D008142 2.1e-57 227.6 193 61.1
MD11G1279000 Malus domestica HOM05D005607 ORTHO05D008142 1.8e-48 198.0 286 45.5
Peaxi162Scf00069g01838 Petunia axillaris HOM05D005607 ORTHO05D008142 7.2e-45 186.0 163 58.3
Glyma.12G162201 Glycine max HOM05D005607 ORTHO05D008142 1.0e-43 182.2 172 56.4
PGSC0003DMG400012404 Solanum tuberosum HOM05D005607 ORTHO05D008142 2.3e-43 181.0 176 52.3
SMO145G0057 Selaginella moellendorffii HOM05D005607 ORTHO05D008142 5.7e-42 176.4 463 30.0
CBR_g2884 Chara braunii HOM05D005607 ORTHO05D008142 8.8e-35 152.5 288 36.5
QL08p023949 Quercus lobata HOM05D005607 ORTHO05D008142 4.1e-32 143.7 100 67.0
FAN25G1444 Fragaria x ananassa HOM05D005607 ORTHO05D008142 6.9e-32 142.9 104 67.3
SEGI_34734 Sequoiadendron giganteum HOM05D005607 ORTHO05D008142 3.1e-24 117.5 128 49.2
SEGI_17376 Sequoiadendron giganteum HOM05D005607 ORTHO05D008142 1.7e-22 111.7 131 44.3
MELO3C033904.2 Cucumis melo HOM05D005607 ORTHO05D008142 1.8e-16 91.7 135 40.7
EL10Ac6g14983 Beta vulgaris HOM05D005607 ORTHO05D008142 1.3e-14 85.5 101 45.5
CBR_g2888 Chara braunii HOM05D000019 ORTHO05D000002 4.0e-11 73.9 77 44.2
Cre05.g246300 Chlamydomonas reinhardtii HOM05D005607 ORTHO05D008142 3.4e-10 70.9 238 27.7
HanXRQChr10g0304121 Helianthus annuus HOM05D005607 ORTHO05D008142 1.7e-06 58.5 60 53.3


User provided reference genes

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