Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s1476 Capsella rubella HOM05D008621 ORTHO05D010242 1.3e-120 436.4 229 100.0
Thhalv10021100m.g Eutrema salsugineum HOM05D008621 ORTHO05D010242 1.3e-96 356.7 233 83.7
AT3G15115 Arabidopsis thaliana HOM05D008621 ORTHO05D010242 3.3e-95 352.1 237 83.1
A01p38850 Brassica napus HOM05D008621 ORTHO05D010242 1.3e-94 350.1 234 82.9
C01p49400 Brassica napus HOM05D008621 ORTHO05D010242 2.2e-94 349.4 234 82.9
CARHR090090 Cardamine hirsuta HOM05D008621 ORTHO05D010242 2.2e-94 349.4 230 83.5
BcaC09g48475 Brassica carinata HOM05D008621 ORTHO05D010242 3.7e-94 348.6 234 82.5
BolC1t04897H Brassica oleracea HOM05D008621 ORTHO05D010242 3.7e-94 348.6 234 82.5
BcaB04g20947 Brassica carinata HOM05D008621 ORTHO05D010242 2.4e-93 345.9 234 82.5
AL3G27470 Arabidopsis lyrata HOM05D008621 ORTHO05D010242 1.0e-91 340.5 230 80.0
BraA01t03931Z Brassica rapa HOM05D008621 ORTHO05D010242 2.5e-90 335.9 229 81.7
Sp3g13320 Schrenkiella parvula HOM05D008621 ORTHO05D010242 4.2e-90 335.1 232 78.4
C05p52100 Brassica napus HOM05D008621 ORTHO05D010242 1.3e-78 297.0 234 74.4
BolC5t33895H Brassica oleracea HOM05D008621 ORTHO05D010242 1.7e-78 296.6 233 73.8
BraA05t22253Z Brassica rapa HOM05D008621 ORTHO05D010242 2.8e-78 295.8 233 74.2
A05p34320 Brassica napus HOM05D008621 ORTHO05D010242 5.5e-74 281.6 231 73.2
BcaB06g29537 Brassica carinata HOM05D008621 ORTHO05D010242 7.2e-74 281.2 233 72.5
Aa31LG8G2330 Aethionema arabicum HOM05D008621 ORTHO05D010242 2.0e-60 236.5 232 62.5
THA.LOC104810457 Tarenaya hassleriana HOM05D008621 ORTHO05D010242 8.3e-38 161.4 244 48.8
AL1G61580 Arabidopsis lyrata HOM05D008621 ORTHO05D010242 7.0e-37 158.3 236 50.8
AT1G53180 Arabidopsis thaliana HOM05D008621 ORTHO05D010242 3.5e-36 156.0 236 50.4
Carub.0001s4237 Capsella rubella HOM05D008621 ORTHO05D010242 8.0e-33 144.8 236 49.6
Sp1g39760 Schrenkiella parvula HOM05D008621 ORTHO05D010242 8.0e-33 144.8 237 48.5
BcaB04g17107 Brassica carinata HOM05D008621 ORTHO05D010242 2.0e-31 140.2 234 48.7
CARHR043410 Cardamine hirsuta HOM05D008621 ORTHO05D010242 2.0e-31 140.2 237 47.7
Thhalv10011625m.g Eutrema salsugineum HOM05D008621 ORTHO05D010242 2.6e-31 139.8 234 49.1
BcaB02g10936 Brassica carinata HOM05D008621 ORTHO05D010242 2.2e-30 136.7 234 48.3
BcaC08g44053 Brassica carinata HOM05D008621 ORTHO05D010242 1.1e-29 134.4 234 47.0
BolC6t36635H Brassica oleracea HOM05D008621 ORTHO05D010242 1.1e-29 134.4 234 47.0
A08p01770 Brassica napus HOM05D008621 ORTHO05D010242 4.1e-29 132.5 234 47.9
C03p91210 Brassica napus HOM05D008621 ORTHO05D010242 9.2e-29 131.3 234 48.3
C06p14570 Brassica napus HOM05D008621 ORTHO05D010242 2.1e-28 130.2 234 46.2
BraA05t20746Z Brassica rapa HOM05D008621 ORTHO05D010242 6.0e-28 128.6 235 45.5
A05p18520 Brassica napus HOM05D008621 ORTHO05D010242 2.3e-27 126.7 235 45.5
BolC3t21434H Brassica oleracea HOM05D008621 ORTHO05D010242 6.6e-27 125.2 235 46.8
BcaC01g01366 Brassica carinata HOM05D008621 ORTHO05D010242 1.9e-26 123.6 235 46.4
THA.LOC104798755 Tarenaya hassleriana HOM05D008621 ORTHO05D010242 4.3e-26 122.5 233 41.6
Aa31LG10G1950 Aethionema arabicum HOM05D008621 ORTHO05D010242 1.7e-22 110.5 230 40.0
Cpa.g.sc80.10 Carica papaya HOM05D008621 ORTHO05D010242 6.4e-22 108.6 186 41.9
Potri.001G372800 Populus trichocarpa HOM05D008621 ORTHO05D010242 2.1e-17 93.6 243 33.3
Sabra16G0245400 Salix brachista HOM05D008621 ORTHO05D010242 1.2e-15 87.8 244 36.1
Ciclev10010201m.g Citrus clementina HOM05D008621 ORTHO05D001329 9.9e-15 84.7 255 34.1
Atru.chr2.2385 Acer truncatum HOM05D008621 ORTHO05D010242 1.3e-14 84.3 259 32.0
Gohir.A01G060500 Gossypium hirsutum HOM05D001501 ORTHO05D001329 6.4e-14 82.0 199 35.2
Gorai.002G066500 Gossypium raimondii HOM05D001501 ORTHO05D001329 2.4e-13 80.1 199 34.7
Glyma.12G227100 Glycine max HOM05D001501 ORTHO05D001329 3.2e-13 79.7 205 34.1
Manes.03G104500 Manihot esculenta HOM05D008621 ORTHO05D010242 4.2e-13 79.3 183 34.4
VMungo1080G0146 Vigna mungo HOM05D001501 ORTHO05D001329 1.2e-12 77.8 230 31.7
Gohir.D01G047000 Gossypium hirsutum HOM05D001501 ORTHO05D001329 2.1e-12 77.0 199 34.2
Phvul.005G069500 Phaseolus vulgaris HOM05D001501 ORTHO05D001329 3.5e-12 76.3 229 31.9
Dinv20212 Davidia involucrata HOM05D001501 ORTHO05D001329 4.6e-12 75.9 207 36.2
Cfa020621 Carpinus fangiana HOM05D001501 ORTHO05D001329 6.0e-12 75.5 137 40.9
Hma1.2p1_0313F.1_g121690 Hydrangea macrophylla HOM05D010484 ORTHO05D001329 6.0e-12 75.5 249 32.1
Thecc.07G099300 Theobroma cacao HOM05D001501 ORTHO05D001329 3.0e-11 73.2 247 32.0
MSTRG.12891 Avicennia marina HOM05D010484 ORTHO05D001329 5.1e-11 72.4 252 33.3
Haze_09384 Corylus avellana HOM05D001501 ORTHO05D001329 6.6e-11 72.0 137 40.1
Manes.15G090300 Manihot esculenta HOM05D008621 ORTHO05D010242 1.9e-10 70.5 249 28.5
SGA_v2.0_scaffold70G23695 Striga asiatica HOM05D010484 ORTHO05D010242 1.9e-10 70.5 245 32.7
Cc05_g11620 Coffea canephora HOM05D010484 ORTHO05D010242 2.5e-10 70.1 194 36.1
Oeu051092.1 Olea europaea HOM05D010484 ORTHO05D010242 2.5e-10 70.1 180 36.1
TAR626G1090 Trochodendron aralioides HOM05D001501 ORTHO05D001329 4.3e-10 69.3 202 35.6
Lj3g0018355 Lotus japonicus HOM05D001501 ORTHO05D001329 9.6e-10 68.2 200 32.5
Glyma.13G273200 Glycine max HOM05D001501 ORTHO05D001329 1.6e-09 67.4 230 30.0
Nn1g04269 Nelumbo nucifera HOM05D001501 ORTHO05D001329 1.6e-09 67.4 208 35.1
vmacro09518 Vaccinium macrocarpon HOM05D000070 ORTHO05D006683 2.1e-09 67.0 180 33.3
Lalb_Chr20g0109461 Lupinus albus HOM05D001501 ORTHO05D001329 2.8e-09 66.6 200 33.0
DCAR_020999 Daucus carota HOM05D008621 ORTHO05D010242 4.8e-09 65.9 198 36.4
QL08p023599 Quercus lobata HOM05D001501 ORTHO05D001329 4.8e-09 65.9 135 35.6
TPR.G17529 Trifolium pratense HOM05D001501 ORTHO05D001329 4.8e-09 65.9 187 33.2
Duzib213G0990 Durio zibethinus HOM05D001501 ORTHO05D001329 8.1e-09 65.1 254 31.1
Medtr2g078620 Medicago truncatula HOM05D001501 ORTHO05D001329 8.1e-09 65.1 242 29.8
Actinidia35237 Actinidia chinensis HOM05D001501 ORTHO05D001329 2.4e-08 63.5 195 31.3
arahy.Tifrunner.gnm1.ann1.B8RZEA Arachis hypogaea HOM05D001501 ORTHO05D001329 5.3e-08 62.4 227 28.6
CSS0041099 Camellia sinensis var. sinensis HOM05D001501 ORTHO05D001329 5.3e-08 62.4 200 31.0
ClCG05G009220 Citrullus lanatus HOM05D001501 ORTHO05D001329 5.3e-08 62.4 226 30.1
GSVIVG01014264001 Vitis vinifera HOM05D001501 ORTHO05D001329 5.3e-08 62.4 136 36.0
SalBow7G1441 Salvia bowleyana HOM05D010484 ORTHO05D010242 9.0e-08 61.6 182 34.1
Prupe.4G173500 Prunus persica HOM05D001501 ORTHO05D001329 2.6e-07 60.1 223 28.7
Psat5g241480 Pisum sativum HOM05D001501 ORTHO05D001329 4.4e-07 59.3 187 30.5
CsaV3_3G019560 Cucumis sativus L. HOM05D001501 ORTHO05D001329 5.8e-07 58.9 225 29.8
MD03G1235500 Malus domestica HOM05D001501 ORTHO05D001329 5.8e-07 58.9 247 27.5
Rhsim04G0022900 Rhododendron simsii HOM05D010484 ORTHO05D010242 9.9e-07 58.2 178 30.9
CiPaw.11G166600 Carya illinoinensis HOM05D001501 ORTHO05D001329 1.3e-06 57.8 132 34.1
Migut.H01963 Erythranthe guttata HOM05D010484 ORTHO05D010242 1.7e-06 57.4 216 31.9
Eucgr.F03292 Eucalyptus grandis HOM05D001501 ORTHO05D001329 2.2e-06 57.0 200 32.0
Lsat_1_v5_gn_5_127461 Lactuca sativa HOM05D016023 ORTHO05D010242 2.2e-06 57.0 92 40.2
arahy.Tifrunner.gnm1.ann1.14Q3ET Arachis hypogaea HOM05D001501 ORTHO05D001329 2.9e-06 56.6 227 26.9
Lsat_1_v5_gn_9_98300 Lactuca sativa HOM05D016023 ORTHO05D010242 2.9e-06 56.6 211 30.3
MD11G1256500 Malus domestica HOM05D001501 ORTHO05D001329 2.9e-06 56.6 208 30.3
Ca_03534_v3 Cicer arietinum L. HOM05D005433 ORTHO05D006675 3.8e-06 56.2 192 31.2
SGA_v2.0_scaffold34G13793 Striga asiatica HOM05D010484 ORTHO05D010242 6.4e-06 55.5 194 29.9


User provided reference genes

Program Settings