Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s1475 Capsella rubella HOM05D005433 ORTHO05D006675 2.6e-139 498.8 272 100.0
AL3G27460 Arabidopsis lyrata HOM05D005433 ORTHO05D006675 1.3e-114 416.8 268 85.4
AT3G15110 Arabidopsis thaliana HOM05D005433 ORTHO05D006675 6.1e-112 407.9 274 84.3
Thhalv10021284m.g Eutrema salsugineum HOM05D005433 ORTHO05D006675 7.4e-110 401.0 283 79.5
Sp3g13310 Schrenkiella parvula HOM05D005433 ORTHO05D006675 1.3e-106 390.2 282 78.4
A05p34330 Brassica napus HOM05D005433 ORTHO05D006675 7.9e-104 380.9 282 77.3
C05p52110 Brassica napus HOM05D005433 ORTHO05D006675 2.3e-103 379.4 282 77.0
BolC5t33896H Brassica oleracea HOM05D005433 ORTHO05D006675 2.3e-103 379.4 282 77.0
BcaB06g29536 Brassica carinata HOM05D005433 ORTHO05D006675 5.1e-103 378.3 282 76.6
BraA05t22254Z Brassica rapa HOM05D005433 ORTHO05D006675 2.5e-102 375.9 282 76.6
Aa31LG8G2320 Aethionema arabicum HOM05D005433 ORTHO05D006675 1.9e-89 333.2 285 69.8
THA.LOC104810456 Tarenaya hassleriana HOM05D005433 ORTHO05D006675 9.8e-78 294.3 277 62.8
Thecc.07G099400 Theobroma cacao HOM05D005433 ORTHO05D006675 2.3e-66 256.5 287 55.4
Cpa.g.sc80.11 Carica papaya HOM05D005433 ORTHO05D006675 1.2e-64 250.8 291 54.6
CsaV3_3G019570 Cucumis sativus L. HOM05D005433 ORTHO05D006675 1.5e-62 243.8 279 53.8
Duzib213G0446 Durio zibethinus HOM05D005433 ORTHO05D006675 2.9e-61 239.6 273 53.8
Hma1.2p1_0416F.1_g148475 Hydrangea macrophylla HOM05D005433 ORTHO05D006675 4.9e-61 238.8 259 56.0
MD03G1235600 Malus domestica HOM05D005433 ORTHO05D006675 6.4e-61 238.4 273 55.7
Cfa020622 Carpinus fangiana HOM05D005433 ORTHO05D006675 2.4e-60 236.5 256 55.9
Haze_09383 Corylus avellana HOM05D005433 ORTHO05D006675 2.4e-60 236.5 236 58.9
CSS0020446 Camellia sinensis var. sinensis HOM05D005433 ORTHO05D006675 7.0e-60 235.0 282 55.0
CiPaw.12G116900 Carya illinoinensis HOM05D005433 ORTHO05D006675 1.6e-59 233.8 267 55.1
Manes.03G104600 Manihot esculenta HOM05D005433 ORTHO05D006675 1.6e-59 233.8 232 58.2
QL08p023594 Quercus lobata HOM05D005433 ORTHO05D006675 1.6e-59 233.8 280 53.6
ClCG05G009210 Citrullus lanatus HOM05D005433 ORTHO05D006675 2.0e-59 233.4 294 50.3
Potri.011G097800 Populus trichocarpa HOM05D005433 ORTHO05D006675 2.0e-59 233.4 267 55.4
GSVIVG01014263001 Vitis vinifera HOM05D005433 ORTHO05D006675 4.6e-59 232.3 290 52.1
Sabra11G0091300 Salix brachista HOM05D005433 ORTHO05D006675 7.8e-59 231.5 269 54.6
PGR083G2284 Punica granatum HOM05D005433 ORTHO05D006675 1.0e-58 231.1 255 53.7
Gohir.D01G046900 Gossypium hirsutum HOM05D005433 ORTHO05D006675 1.7e-58 230.3 221 60.6
Gorai.002G066400 Gossypium raimondii HOM05D005433 ORTHO05D006675 1.7e-58 230.3 221 60.6
Gohir.A01G060400 Gossypium hirsutum HOM05D005433 ORTHO05D006675 2.3e-58 229.9 230 57.8
Lalb_Chr25g0286191 Lupinus albus HOM05D005433 ORTHO05D006675 6.6e-58 228.4 220 59.5
Actinidia35236 Actinidia chinensis HOM05D005433 ORTHO05D006675 1.5e-57 227.3 237 57.8
Nn1g06380 Nelumbo nucifera HOM05D005433 ORTHO05D006675 2.5e-57 226.5 290 50.7
TWI38G0185 Tripterygium wilfordii HOM05D005433 ORTHO05D006675 2.5e-57 226.5 260 52.7
Eucgr.F01178 Eucalyptus grandis HOM05D005433 ORTHO05D006675 3.3e-57 226.1 215 60.0
SalBow8G0584 Salvia bowleyana HOM05D005433 ORTHO05D006675 4.3e-57 225.7 228 59.6
Ciclev10009151m.g Citrus clementina HOM05D005433 ORTHO05D006675 7.3e-57 224.9 282 51.8
Rhsim04G0023000 Rhododendron simsii HOM05D005433 ORTHO05D006675 1.2e-56 224.2 296 49.7
EL10Ac4g08262 Beta vulgaris HOM05D005433 ORTHO05D006675 2.1e-56 223.4 268 54.9
AUR62036145 Chenopodium quinoa HOM05D005433 ORTHO05D006675 2.1e-56 223.4 217 62.2
PSO675G6755 Papaver somniferum HOM05D005433 ORTHO05D006675 3.6e-56 222.6 214 62.1
RcHm_v2.0_Chr5g0032261 Rosa chinensis HOM05D005433 ORTHO05D006675 3.6e-56 222.6 280 52.1
MBI07_g32542_MAGBIO Magnolia biondii HOM05D005433 ORTHO05D006675 4.7e-56 222.2 259 52.5
arahy.Tifrunner.gnm1.ann1.7LX6SY Arachis hypogaea HOM05D005433 ORTHO05D006675 6.2e-56 221.9 210 56.2
DCAR_019573 Daucus carota HOM05D005433 ORTHO05D006675 6.2e-56 221.9 212 60.8
HanXRQChr10g0302491 Helianthus annuus HOM05D005433 ORTHO05D006675 6.2e-56 221.9 263 53.2
arahy.Tifrunner.gnm1.ann1.H96BGA Arachis hypogaea HOM05D005433 ORTHO05D006675 8.0e-56 221.5 223 55.2
Solyc10g007120.4 Solanum lycopersicum HOM05D005433 ORTHO05D006675 8.0e-56 221.5 217 60.4
Sopen10g003020 Solanum pennellii HOM05D005433 ORTHO05D006675 8.0e-56 221.5 217 60.4
Sc16g0007310 Simmondsia chinensis HOM05D005433 ORTHO05D006675 1.4e-55 220.7 252 55.2
Migut.M00771 Erythranthe guttata HOM05D005433 ORTHO05D006675 2.3e-55 219.9 213 61.5
Nitab4.5_0005232g0030 Nicotiana tabacum HOM05D005433 ORTHO05D006675 3.1e-55 219.5 283 49.1
VMungo0331G0725 Vigna mungo HOM05D005433 ORTHO05D006675 3.1e-55 219.5 286 50.7
CAN.G1119.17 Capsicum annuum HOM05D005433 ORTHO05D006675 4.0e-55 219.2 222 58.6
FAN25G0011 Fragaria x ananassa HOM05D005433 ORTHO05D006675 4.0e-55 219.2 281 49.8
Phvul.010G112200 Phaseolus vulgaris HOM05D005433 ORTHO05D006675 5.2e-55 218.8 288 49.3
TAR624G0745 Trochodendron aralioides HOM05D005433 ORTHO05D006675 6.8e-55 218.4 260 53.1
Peaxi162Scf00027g01311 Petunia axillaris HOM05D005433 ORTHO05D006675 8.9e-55 218.0 215 60.0
PGSC0003DMG400021311 Solanum tuberosum HOM05D005433 ORTHO05D006675 8.9e-55 218.0 220 58.2
ECA234G3266 Erigeron canadensis HOM05D005433 ORTHO05D006675 1.2e-54 217.6 220 58.6
Nitab4.5_0001208g0170 Nicotiana tabacum HOM05D005433 ORTHO05D006675 1.2e-54 217.6 274 51.1
PSO541G1927 Papaver somniferum HOM05D005433 ORTHO05D006675 1.2e-54 217.6 272 52.9
CDE10G1174 Ceratophyllum demersum HOM05D005433 ORTHO05D006675 1.5e-54 217.2 220 58.2
FvH4_3g19170 Fragaria vesca HOM05D005433 ORTHO05D006675 2.0e-54 216.9 281 49.8
MSTRG.15245 Avicennia marina HOM05D005433 ORTHO05D006675 3.4e-54 216.1 220 59.1
FAN11G1719 Fragaria x ananassa HOM05D005433 ORTHO05D006675 5.8e-54 215.3 221 57.5
FAN16G0161 Fragaria x ananassa HOM05D005433 ORTHO05D006675 7.5e-54 214.9 270 51.9
Cc05_g11610 Coffea canephora HOM05D005433 ORTHO05D006675 1.3e-53 214.2 209 58.4
Glyma.12G227200 Glycine max HOM05D005433 ORTHO05D006675 1.7e-53 213.8 291 48.5
CANSAT35G1219 Cannabis sativa HOM05D005433 ORTHO05D006675 2.9e-53 213.0 279 47.3
SGA_v2.0_scaffold73G24224 Striga asiatica HOM05D005433 ORTHO05D006675 4.9e-53 212.2 219 58.4
Lsat_1_v5_gn_5_127421 Lactuca sativa HOM05D005433 ORTHO05D006675 2.4e-52 209.9 274 50.7
TPR.G17538 Trifolium pratense HOM05D005433 ORTHO05D006675 2.0e-51 206.8 230 53.9
vmacro09517 Vaccinium macrocarpon HOM05D005433 ORTHO05D006675 2.7e-51 206.5 314 45.2
Ca_03534_v3 Cicer arietinum L. HOM05D005433 ORTHO05D006675 7.8e-51 204.9 280 47.1
Ca_30930_v3 Cicer arietinum L. HOM05D005433 ORTHO05D006675 7.8e-51 204.9 280 47.1
FAN21G1059 Fragaria x ananassa HOM05D005433 ORTHO05D006675 1.3e-50 204.1 279 48.0
Lj3g0015051 Lotus japonicus HOM05D005433 ORTHO05D006675 1.5e-49 200.7 288 45.5
Psat5g241440 Pisum sativum HOM05D005433 ORTHO05D006675 2.5e-49 199.9 270 48.9
Aqoxy4G00583 Aquilegia oxysepala HOM05D005433 ORTHO05D006675 9.5e-49 198.0 220 56.4
Medtr2g078540 Medicago truncatula HOM05D005433 ORTHO05D006675 9.5e-49 198.0 269 47.2
ATR0602G229 Amborella trichopoda HOM05D005433 ORTHO05D006675 1.2e-48 197.6 204 57.8
unitig_85.g27411 Utricularia gibba HOM05D005433 ORTHO05D006675 6.2e-48 195.3 229 53.3
unitig_86.g29837 Utricularia gibba HOM05D005433 ORTHO05D006675 6.2e-48 195.3 229 53.3
Os02g0307800 Oryza sativa ssp. japonica HOM05D005433 ORTHO05D006675 1.1e-47 194.5 236 51.7
Gorai.007G325500 Gossypium raimondii HOM05D005433 ORTHO05D006675 1.5e-46 190.7 206 55.8
Gohir.D11G306500 Gossypium hirsutum HOM05D005433 ORTHO05D006675 2.0e-46 190.3 219 54.3
Dinv14949 Davidia involucrata HOM05D005433 ORTHO05D006675 7.5e-46 188.3 182 63.2
Gohir.A11G286600 Gossypium hirsutum HOM05D005433 ORTHO05D006675 1.7e-45 187.2 225 52.0
BcaB01g02390 Brassica carinata HOM05D005433 ORTHO05D006675 1.1e-44 184.5 202 58.9
Zm00001eb235270 Zea mays HOM05D005433 ORTHO05D006675 1.1e-44 184.5 259 46.3
Prupe.4G173400 Prunus persica HOM05D005433 ORTHO05D006675 1.4e-44 184.1 211 55.0
Glyma.06G235100 Glycine max HOM05D005433 ORTHO05D006675 5.4e-44 182.2 184 58.2
C09p61630 Brassica napus HOM05D005433 ORTHO05D006675 2.7e-43 179.9 174 65.5
BolC9t59001H Brassica oleracea HOM05D005433 ORTHO05D006675 2.7e-43 179.9 174 65.5
MD11G1256600 Malus domestica HOM05D005433 ORTHO05D006675 7.8e-43 178.3 201 56.7
Atru.chr2.2384 Acer truncatum HOM05D005433 ORTHO05D006675 1.7e-42 177.2 202 55.9
MSTRG.12890 Avicennia marina HOM05D005433 ORTHO05D006675 3.1e-39 166.4 213 50.2
Lj2g0011732 Lotus japonicus HOM05D005433 ORTHO05D006675 1.5e-38 164.1 210 47.6
Migut.H01964 Erythranthe guttata HOM05D005433 ORTHO05D006675 2.2e-37 160.2 213 49.3
Medtr6g042030 Medicago truncatula HOM05D005433 ORTHO05D006675 4.9e-37 159.1 197 50.8
Sed0015039 Sechium edule HOM05D005433 ORTHO05D006675 6.4e-37 158.7 157 58.0
AUR62019491 Chenopodium quinoa HOM05D005433 ORTHO05D006675 2.7e-35 153.3 214 49.5
Lj8A153T41 Lonicera japonica HOM05D005433 ORTHO05D006675 4.6e-35 152.5 191 53.9
Psat1g075280 Pisum sativum HOM05D005433 ORTHO05D006675 6.0e-35 152.1 184 49.5
Pp3c11_19700 Physcomitrium patens HOM05D005433 ORTHO05D006675 8.6e-34 148.3 213 45.1
arahy.Tifrunner.gnm1.ann1.2X8QJZ Arachis hypogaea HOM05D005433 ORTHO05D006675 1.1e-33 147.9 239 43.9
arahy.Tifrunner.gnm1.ann1.8TDA44 Arachis hypogaea HOM05D005433 ORTHO05D006675 2.4e-31 140.2 284 39.1
C02p31450 Brassica napus HOM05D005433 ORTHO05D006675 6.9e-31 138.7 102 72.5
AagrBONN_evm.TU.Sc2ySwM_368.1222 Anthoceros agrestis HOM05D005433 ORTHO05D006675 2.6e-30 136.7 248 38.3
TPR.G19712 Trifolium pratense HOM05D005433 ORTHO05D006675 4.4e-30 136.0 221 43.0
Mapoly0060s0103 Marchantia polymorpha HOM05D005433 ORTHO05D006675 7.6e-30 135.2 223 43.0
Thecc.07G099700 Theobroma cacao HOM05D005433 ORTHO05D006675 6.4e-29 132.1 139 54.0
HPP92_027387 Vanilla planifolia HOM05D005433 ORTHO05D006675 8.4e-29 131.7 139 54.7
CARHR090080 Cardamine hirsuta HOM05D005433 ORTHO05D006675 1.7e-26 124.0 75 86.7
SGA_v2.0_scaffold70G23696 Striga asiatica HOM05D005433 ORTHO05D006675 9.6e-25 118.2 151 49.7
Lsat_1_v5_gn_7_42380 Lactuca sativa HOM05D005433 ORTHO05D006675 4.8e-24 115.9 137 55.5
C01p49410 Brassica napus HOM05D005433 ORTHO05D040690 1.4e-23 114.4 137 55.5
CBR_g28819 Chara braunii HOM05D005433 ORTHO05D006675 6.9e-23 112.1 226 37.6
SMO143G0248 Selaginella moellendorffii HOM05D009232 ORTHO05D006675 1.2e-22 111.3 206 41.3
CARHR090070 Cardamine hirsuta HOM05D005433 ORTHO05D006675 1.7e-21 107.5 67 85.1
Glyma.13G273100 Glycine max HOM05D005433 ORTHO05D006675 1.6e-19 100.9 163 43.6
Lalb_Chr03g0030801 Lupinus albus HOM05D005433 ORTHO05D006675 3.5e-19 99.8 127 48.8
Lsat_1_v5_gn_0_4360 Lactuca sativa HOM05D005433 ORTHO05D006675 3.0e-18 96.7 177 41.8
Oeu051094.1 Olea europaea HOM05D005433 ORTHO05D006675 4.8e-16 89.4 218 36.2
EL10Ac5g11588 Beta vulgaris HOM05D005433 ORTHO05D006675 9.0e-15 85.1 72 63.9
Oeu051093.1 Olea europaea HOM05D005433 ORTHO05D006675 1.5e-14 84.3 182 36.3
Cre03.g167400 Chlamydomonas reinhardtii HOM05D005433 ORTHO05D006675 3.2e-12 76.6 139 41.7
Oeu055126.1 Olea europaea HOM05D005433 ORTHO05D006675 6.0e-11 72.4 123 42.3
MCO01G315 Micromonas commoda HOM05D005433 ORTHO05D006675 3.7e-08 63.2 193 28.5
Actinidia09909 Actinidia chinensis HOM05D005433 ORTHO05D006675 1.5e-06 57.8 43 69.8
Lsat_1_v5_gn_4_180780 Lactuca sativa HOM05D005433 ORTHO05D006675 2.6e-06 57.0 62 54.8


User provided reference genes

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