Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s1449 Capsella rubella HOM05D004150 ORTHO05D005087 4.0e-284 980.7 480 100.0
AT3G14830 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 7.6e-259 896.7 479 90.4
AL3G27140 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 9.9e-259 896.3 479 91.6
CARHR089770 Cardamine hirsuta HOM05D004150 ORTHO05D005087 7.4e-246 853.6 480 88.1
BolC5t33929H Brassica oleracea HOM05D004150 ORTHO05D005087 5.7e-230 800.8 482 83.4
BcaC05g29034 Brassica carinata HOM05D004150 ORTHO05D005087 1.4e-228 796.2 482 83.2
C05p52450 Brassica napus HOM05D004150 ORTHO05D005087 4.1e-228 794.7 482 83.0
BcaB06g25355 Brassica carinata HOM05D004150 ORTHO05D005087 2.5e-222 775.4 481 81.7
A05p34660 Brassica napus HOM05D004150 ORTHO05D005087 1.7e-221 772.7 481 81.5
BraA05t22282Z Brassica rapa HOM05D004150 ORTHO05D005087 6.9e-220 767.3 481 80.9
Aa31LG8G2040 Aethionema arabicum HOM05D004150 ORTHO05D005087 9.4e-217 756.9 485 79.4
THA.LOC104815577 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 7.9e-216 753.8 483 77.6
THA.LOC104810428 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 2.4e-212 742.3 483 77.2
Sp1g39990 Schrenkiella parvula HOM05D004150 ORTHO05D005087 1.7e-210 736.1 479 77.0
Thhalv10011465m.g Eutrema salsugineum HOM05D004150 ORTHO05D005087 6.7e-207 724.2 479 76.2
AT1G53450 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 1.9e-201 706.1 479 73.5
CARHR043670 Cardamine hirsuta HOM05D004150 ORTHO05D005087 4.7e-200 701.4 480 74.0
Carub.0001s4264 Capsella rubella HOM05D004150 ORTHO05D005087 2.3e-199 699.1 479 72.7
BcaB07g33329 Brassica carinata HOM05D004150 ORTHO05D005087 7.5e-190 667.5 480 70.4
BcaC08g43529 Brassica carinata HOM05D004150 ORTHO05D005087 1.2e-187 660.2 483 70.6
BolC6t35999H Brassica oleracea HOM05D004150 ORTHO05D005087 1.2e-187 660.2 483 70.6
A06p01010 Brassica napus HOM05D004150 ORTHO05D005087 7.7e-187 657.5 483 70.0
BraA06t23329Z Brassica rapa HOM05D004150 ORTHO05D005087 1.7e-186 656.4 483 69.8
C06p09220 Brassica napus HOM05D004150 ORTHO05D005087 8.0e-184 647.5 483 69.6
Cfa019528 Carpinus fangiana HOM05D004150 ORTHO05D005087 2.6e-182 642.5 484 66.1
Hma1.2p1_2701F.1_g327060 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 1.7e-181 639.8 482 66.4
Psat5g234480 Pisum sativum HOM05D004150 ORTHO05D005087 2.3e-178 629.4 483 65.8
CSS0042666 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 3.3e-177 625.5 485 64.7
CANSAT56G2087 Cannabis sativa HOM05D004150 ORTHO05D005087 3.3e-177 625.5 483 64.0
Potri.003G026500 Populus trichocarpa HOM05D004150 ORTHO05D005087 2.1e-176 622.9 487 63.9
PGR083G0816 Punica granatum HOM05D004150 ORTHO05D005087 2.8e-176 622.5 489 63.8
Glyma.13G266400 Glycine max HOM05D004150 ORTHO05D005087 1.0e-175 620.5 484 64.5
TWI38G0344 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 2.3e-175 619.4 486 64.2
CSS0001873 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 4.0e-175 618.6 483 62.9
COL.COLO4_17523 Corchorus olitorius HOM05D004150 ORTHO05D005087 4.0e-175 618.6 483 64.6
Manes.03G091700 Manihot esculenta HOM05D004150 ORTHO05D005087 4.0e-175 618.6 487 64.3
CiPaw.11G157600 Carya illinoinensis HOM05D004150 ORTHO05D005087 6.8e-175 617.8 484 64.7
Thecc.07G119700 Theobroma cacao HOM05D004150 ORTHO05D005087 6.8e-175 617.8 483 64.2
Glyma.12G231700 Glycine max HOM05D004150 ORTHO05D005087 1.5e-174 616.7 484 64.3
Ca_03941_v3 Cicer arietinum L. HOM05D004150 ORTHO05D005087 2.6e-174 615.9 484 64.9
Gohir.A13G149900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 2.6e-174 615.9 482 64.9
Phvul.005G079200 Phaseolus vulgaris HOM05D004150 ORTHO05D005087 5.8e-174 614.8 486 63.2
Atru.chr2.2041 Acer truncatum HOM05D004150 ORTHO05D005087 9.8e-174 614.0 484 64.9
VMungo1080G1533 Vigna mungo HOM05D004150 ORTHO05D005087 9.8e-174 614.0 486 63.2
Potri.011G106600 Populus trichocarpa HOM05D004150 ORTHO05D005087 1.3e-173 613.6 491 64.2
Atru.chr2.2029 Acer truncatum HOM05D004150 ORTHO05D005087 1.7e-173 613.2 484 64.9
MD03G1246300 Malus domestica HOM05D004150 ORTHO05D005087 1.7e-173 613.2 484 63.6
GSVIVG01014152001 Vitis vinifera HOM05D004150 ORTHO05D005087 2.2e-173 612.8 484 64.3
Cc05_g10890 Coffea canephora HOM05D004150 ORTHO05D005087 2.9e-173 612.5 483 63.8
Gorai.002G053300 Gossypium raimondii HOM05D004150 ORTHO05D005087 3.7e-173 612.1 484 64.7
Eucgr.F01300 Eucalyptus grandis HOM05D004150 ORTHO05D005087 1.4e-172 610.1 487 63.2
Gohir.A01G052900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 4.1e-172 608.6 483 64.2
Medtr2g075340 Medicago truncatula HOM05D004150 ORTHO05D005087 5.4e-172 608.2 482 63.7
Gohir.D01G042500 Gossypium hirsutum HOM05D004150 ORTHO05D005087 7.0e-172 607.8 484 64.5
Lj3g0004524 Lotus japonicus HOM05D004150 ORTHO05D005087 7.0e-172 607.8 487 63.2
FvH4_3g17970 Fragaria vesca HOM05D004150 ORTHO05D005087 2.0e-171 606.3 486 64.0
TWI39G0561 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 2.0e-171 606.3 487 62.2
Ciclev10019972m.g Citrus clementina HOM05D004150 ORTHO05D005087 4.6e-171 605.1 488 63.1
FAN21G0088 Fragaria x ananassa HOM05D004150 ORTHO05D005087 1.7e-170 603.2 485 63.7
RcHm_v2.0_Chr5g0030011 Rosa chinensis HOM05D004150 ORTHO05D005087 5.0e-170 601.7 489 62.4
Lalb_Chr19g0133751 Lupinus albus HOM05D004150 ORTHO05D005087 1.5e-169 600.1 480 62.3
MD11G1267300 Malus domestica HOM05D004150 ORTHO05D005087 1.9e-169 599.7 485 62.5
CsaV3_4G032910 Cucumis sativus L. HOM05D004150 ORTHO05D005087 3.3e-169 599.0 481 63.4
EL10Ac4g08396 Beta vulgaris HOM05D004150 ORTHO05D005087 5.6e-169 598.2 483 60.5
Lsat_1_v5_gn_9_100501 Lactuca sativa HOM05D004150 ORTHO05D005087 9.5e-169 597.4 487 61.2
Sc03g0010640 Simmondsia chinensis HOM05D004150 ORTHO05D005087 1.2e-168 597.0 486 62.3
MBI06_g16571_MAGBIO Magnolia biondii HOM05D004150 ORTHO05D005087 1.6e-168 596.7 482 61.8
Aqoxy1G01964 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 3.6e-168 595.5 478 61.7
Manes.15G097400 Manihot esculenta HOM05D004150 ORTHO05D005087 4.7e-168 595.1 486 62.3
CAN.G375.32 Capsicum annuum HOM05D004150 ORTHO05D005087 6.2e-168 594.7 529 58.8
Solyc07g062250.3 Solanum lycopersicum HOM05D004150 ORTHO05D005087 1.1e-167 594.0 528 58.1
Sopen07g030520 Solanum pennellii HOM05D004150 ORTHO05D005087 8.9e-167 590.9 528 57.8
Lalb_Chr25g0285681 Lupinus albus HOM05D004150 ORTHO05D005087 3.4e-166 589.0 481 62.0
PGSC0003DMG400007094 Solanum tuberosum HOM05D004150 ORTHO05D005087 1.1e-164 583.9 527 57.7
PSO170G1443 Papaver somniferum HOM05D004150 ORTHO05D005087 5.4e-164 581.6 486 59.1
Lj1A826G61 Lonicera japonica HOM05D004150 ORTHO05D005087 7.1e-164 581.3 489 61.3
HanXRQChr17g0556791 Helianthus annuus HOM05D004150 ORTHO05D005087 1.6e-163 580.1 481 59.9
Nn6g34456 Nelumbo nucifera HOM05D004150 ORTHO05D005087 2.1e-163 579.7 484 60.3
HanXRQChr10g0305531 Helianthus annuus HOM05D004150 ORTHO05D005087 2.7e-163 579.3 489 59.5
FAN25G1025 Fragaria x ananassa HOM05D004150 ORTHO05D005087 3.5e-163 578.9 524 58.6
Oeu058459.1 Olea europaea HOM05D004150 ORTHO05D005087 3.5e-163 578.9 484 60.7
MELO3C025660.2 Cucumis melo HOM05D004150 ORTHO05D005087 6.0e-163 578.2 493 60.6
FAN11G2611 Fragaria x ananassa HOM05D004150 ORTHO05D005087 6.0e-163 578.2 505 60.6
Sabra16G0254300 Salix brachista HOM05D004150 ORTHO05D005087 6.0e-163 578.2 536 57.6
FAN16G0401 Fragaria x ananassa HOM05D004150 ORTHO05D005087 3.0e-162 575.9 522 58.2
PSO782G0021 Papaver somniferum HOM05D004150 ORTHO05D005087 3.9e-162 575.5 486 58.6
ClCG11G017260 Citrullus lanatus HOM05D004150 ORTHO05D005087 5.1e-162 575.1 548 55.7
Nitab4.5_0000347g0180 Nicotiana tabacum HOM05D004150 ORTHO05D005087 7.3e-161 571.2 529 57.3
Rhsim04G0036400 Rhododendron simsii HOM05D004150 ORTHO05D005087 2.1e-160 569.7 488 59.6
MSTRG.14976 Avicennia marina HOM05D004150 ORTHO05D005087 4.7e-160 568.5 484 59.7
Peaxi162Scf00111g01477 Petunia axillaris HOM05D004150 ORTHO05D005087 4.7e-160 568.5 527 55.8
vmacro09408 Vaccinium macrocarpon HOM05D004150 ORTHO05D005087 4.7e-160 568.5 492 60.6
ECA234G0958 Erigeron canadensis HOM05D004150 ORTHO05D005087 1.4e-159 567.0 489 57.9
Oeu010027.3 Olea europaea HOM05D004150 ORTHO05D005087 1.8e-159 566.6 508 57.5
Rhsim04G0035400 Rhododendron simsii HOM05D004150 ORTHO05D005087 3.1e-159 565.8 488 59.8
Lalb_Chr03g0031251 Lupinus albus HOM05D004150 ORTHO05D005087 2.0e-158 563.1 479 59.1
Actinidia21439 Actinidia chinensis HOM05D004150 ORTHO05D005087 4.4e-158 562.0 484 60.7
TPR.G13030 Trifolium pratense HOM05D004150 ORTHO05D005087 7.6e-158 561.2 485 60.0
SGA_v2.0_scaffold130G34274 Striga asiatica HOM05D004150 ORTHO05D005087 1.2e-155 553.9 511 56.9
Gohir.D13G154200 Gossypium hirsutum HOM05D004150 ORTHO05D005087 6.0e-155 551.6 440 64.8
Sed0003063 Sechium edule HOM05D004150 ORTHO05D005087 3.9e-154 548.9 440 62.7
TAR629G2423 Trochodendron aralioides HOM05D004150 ORTHO05D005087 6.6e-154 548.1 443 61.9
Actinidia12595 Actinidia chinensis HOM05D004150 ORTHO05D005087 4.7e-152 542.0 548 52.2
AUR62019617 Chenopodium quinoa HOM05D004150 ORTHO05D005087 2.0e-150 536.6 484 56.4
AUR62039606 Chenopodium quinoa HOM05D004150 ORTHO05D005087 3.4e-150 535.8 484 56.4
ATR0127G006 Amborella trichopoda HOM05D004150 ORTHO05D005087 1.3e-149 533.9 490 55.3
Ah.04g164080 Amaranthus hybridus HOM05D004150 ORTHO05D005087 8.4e-149 531.2 483 57.3
Gorai.013G174200 Gossypium raimondii HOM05D004150 ORTHO05D005087 1.6e-147 526.9 492 57.9
Os01g0729900 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 6.0e-147 525.0 504 52.8
AL1G61960 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 7.8e-147 524.6 341 75.1
SalBow7G0391 Salvia bowleyana HOM05D004150 ORTHO05D005087 2.3e-146 523.1 485 56.3
Migut.H02018 Erythranthe guttata HOM05D004150 ORTHO05D005087 9.6e-145 517.7 444 58.8
Dinv15009 Davidia involucrata HOM05D004150 ORTHO05D005087 1.1e-140 504.2 395 65.3
Zm00001eb154220 Zea mays HOM05D004150 ORTHO05D005087 3.2e-140 502.7 499 51.3
ECA240G3777 Erigeron canadensis HOM05D004150 ORTHO05D005087 8.7e-138 494.6 401 60.6
Potri.001G386700 Populus trichocarpa HOM05D004150 ORTHO05D005087 2.8e-136 489.6 400 62.8
TAR627G0919 Trochodendron aralioides HOM05D004150 ORTHO05D005087 1.1e-135 487.6 398 62.6
Prupe.4G158300 Prunus persica HOM05D004150 ORTHO05D005087 2.0e-134 483.4 406 63.3
Dinv18386 Davidia involucrata HOM05D004150 ORTHO05D005087 7.6e-134 481.5 397 62.0
Duzib213G1096 Durio zibethinus HOM05D004150 ORTHO05D005087 1.4e-132 477.2 443 58.5
Os05g0530300 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 1.6e-131 473.8 513 48.9
Hund10457 Selenicereus undatus HOM05D004150 ORTHO05D005087 2.1e-131 473.4 444 57.2
Cpa.g.sc77.46 Carica papaya HOM05D004150 ORTHO05D005087 6.7e-130 468.4 283 75.3
HPP92_005189 Vanilla planifolia HOM05D004150 ORTHO05D005087 7.4e-129 464.9 399 56.6
Zm00001eb361900 Zea mays HOM05D004150 ORTHO05D005087 3.4e-126 456.1 458 51.3
QL08p025853 Quercus lobata HOM05D004150 ORTHO05D005087 1.3e-125 454.1 291 70.8
CDE06G0863 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 1.1e-124 451.1 466 51.7
Sabra11G0094900 Salix brachista HOM05D004150 ORTHO05D005087 2.5e-124 449.9 447 55.9
CiPaw.12G111300 Carya illinoinensis HOM05D004150 ORTHO05D005087 5.5e-124 448.7 360 63.9
Nitab4.5_0024430g0010 Nicotiana tabacum HOM05D004150 ORTHO05D005087 5.7e-121 438.7 287 67.9
unitig_21.g20061 Utricularia gibba HOM05D004150 ORTHO05D005087 9.3e-116 421.4 486 47.9
Nn3g21055 Nelumbo nucifera HOM05D004150 ORTHO05D005087 2.8e-112 409.8 417 55.4
DCAR_013267 Daucus carota HOM05D004150 ORTHO05D005087 7.2e-108 395.2 286 62.6
SMO169G0186 Selaginella moellendorffii HOM05D004150 ORTHO05D005087 6.1e-107 392.1 287 62.4
Os06g0152800 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 7.2e-100 368.6 295 55.3
AagrBONN_evm.TU.Sc2ySwM_362.2802 Anthoceros agrestis HOM05D004150 ORTHO05D005087 1.4e-98 364.4 545 39.4
Mapoly0001s0101 Marchantia polymorpha HOM05D004150 ORTHO05D005087 1.4e-98 364.4 307 57.0
Pp3c9_8060 Physcomitrium patens HOM05D004150 ORTHO05D005087 2.0e-97 360.5 546 40.5
Zm00001eb271010 Zea mays HOM05D004150 ORTHO05D005087 4.5e-94 349.4 304 53.3
SEGI_28417 Sequoiadendron giganteum HOM05D004150 ORTHO05D005087 5.7e-89 332.4 395 44.6
CDE02G2021 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 2.6e-81 307.0 304 54.6
Zm00001eb293260 Zea mays HOM05D004150 ORTHO05D005087 3.4e-81 306.6 379 46.4
Hma1.2p1_1650F.1_g295710 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 8.6e-69 265.4 305 54.1
Mapoly0030s0045 Marchantia polymorpha HOM05D004150 ORTHO05D005087 1.0e-58 231.9 206 56.8
BolC5t30531H Brassica oleracea HOM05D004150 ORTHO05D032065 6.8e-58 229.2 181 71.3
Haze_09270 Corylus avellana HOM05D004150 ORTHO05D005087 3.2e-55 220.3 205 52.7
AL1G62010 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 7.5e-49 199.1 140 75.0
Gorai.010G164000 Gossypium raimondii HOM05D004150 ORTHO05D005087 2.4e-47 194.1 179 55.9
Haze_09266 Corylus avellana HOM05D004150 ORTHO05D005087 1.6e-46 191.4 195 58.5
QL08p025867 Quercus lobata HOM05D004150 ORTHO05D005087 1.1e-39 168.7 194 52.6
CDE09G0238 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 5.1e-37 159.8 126 54.8
Gohir.A02G079101 Gossypium hirsutum HOM05D004150 ORTHO05D005087 7.3e-36 156.0 159 57.2
Gohir.D04G018433 Gossypium hirsutum HOM05D004150 ORTHO05D005087 6.2e-35 152.9 95 75.8
Gorai.001G168800 Gossypium raimondii HOM05D004150 ORTHO05D005087 4.0e-34 150.2 92 76.1
Gohir.A11G228702 Gossypium hirsutum HOM05D004150 ORTHO05D005087 5.8e-33 146.4 95 72.6
Haze_09267 Corylus avellana HOM05D004150 ORTHO05D005087 6.0e-30 136.3 144 47.2
Haze_09268 Corylus avellana HOM05D004150 ORTHO05D005087 6.0e-30 136.3 144 47.2
arahy.Tifrunner.gnm1.ann1.H8RDCT Arachis hypogaea HOM05D004150 ORTHO05D005087 1.7e-29 134.8 87 66.7
arahy.Tifrunner.gnm1.ann1.R67SZW Arachis hypogaea HOM05D004150 ORTHO05D005087 1.7e-29 134.8 87 66.7
EL10Ac9g22809 Beta vulgaris HOM05D004150 ORTHO05D005087 1.1e-28 132.1 139 58.3
VMungo1309G1261 Vigna mungo HOM05D004150 ORTHO05D005087 3.6e-27 127.1 115 61.7
Actinidia33318 Actinidia chinensis HOM05D004150 ORTHO05D005087 2.9e-24 117.5 178 42.7
Aqoxy1G01962 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 1.1e-23 115.5 140 47.1
BcaC05g25858 Brassica carinata HOM05D004150 ORTHO05D032065 2.3e-21 107.8 89 73.0
BcaB07g31995 Brassica carinata HOM05D004150 ORTHO05D032065 8.7e-21 105.9 89 69.7
Haze_11864 Corylus avellana HOM05D004150 ORTHO05D005087 2.1e-19 101.3 160 44.4
ECA240G1314 Erigeron canadensis HOM05D000062 ORTHO05D000043 3.7e-11 73.9 45 71.1
VMungo0251G3124 Vigna mungo HOM05D004150 ORTHO05D005087 2.0e-09 68.2 74 55.4


User provided reference genes

Program Settings