Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s1380 Capsella rubella HOM05D007739 ORTHO05D009838 1.0e-102 376.7 189 100.0
AL3G26440 Arabidopsis lyrata HOM05D007739 ORTHO05D009838 4.2e-80 301.6 188 81.4
AT3G14190 Arabidopsis thaliana HOM05D007739 ORTHO05D009838 7.5e-77 290.8 188 79.3
A03p38660 Brassica napus HOM05D007739 ORTHO05D009838 5.6e-72 274.6 191 76.4
BraA03t13013Z Brassica rapa HOM05D007739 ORTHO05D009838 5.6e-72 274.6 191 76.4
Sp3g12450 Schrenkiella parvula HOM05D007739 ORTHO05D009838 2.3e-70 269.2 194 76.8
Thhalv10021564m.g Eutrema salsugineum HOM05D007739 ORTHO05D009838 8.9e-70 267.3 190 76.8
CARHR089070 Cardamine hirsuta HOM05D007739 ORTHO05D009838 1.2e-69 266.9 195 72.8
BcaB04g18824 Brassica carinata HOM05D007739 ORTHO05D009838 4.4e-69 265.0 191 75.9
BolC3t16943H Brassica oleracea HOM05D007739 ORTHO05D009838 4.4e-69 265.0 186 73.7
BcaC01g03953 Brassica carinata HOM05D007739 ORTHO05D009838 1.9e-67 259.6 189 72.5
C03p46780 Brassica napus HOM05D007739 ORTHO05D009838 1.9e-67 259.6 186 72.6
C01p50440 Brassica napus HOM05D007739 ORTHO05D009838 8.6e-57 224.2 194 70.1
BcaNung07312 Brassica carinata HOM05D007739 ORTHO05D009838 1.9e-56 223.0 194 70.1
BolC1t04996H Brassica oleracea HOM05D007739 ORTHO05D009838 4.4e-53 211.8 193 66.3
A01p39500 Brassica napus HOM05D007739 ORTHO05D009838 4.6e-50 201.8 195 63.6
BraA01t03991Z Brassica rapa HOM05D007739 ORTHO05D009838 7.8e-50 201.1 195 63.6
THA.LOC104815614 Tarenaya hassleriana HOM05D007739 ORTHO05D009838 8.4e-44 181.0 182 54.4
THA.LOC104815612 Tarenaya hassleriana HOM05D007739 ORTHO05D009838 2.1e-42 176.4 182 53.3
Thhalv10014740m.g Eutrema salsugineum HOM05D007739 ORTHO05D009838 8.7e-33 144.4 189 46.0
Sp6g31280 Schrenkiella parvula HOM05D007739 ORTHO05D009838 1.1e-32 144.1 188 46.8
Aa31LG8G1440 Aethionema arabicum HOM05D007739 ORTHO05D009838 3.3e-32 142.5 110 70.0
AL6G23160 Arabidopsis lyrata HOM05D007739 ORTHO05D009838 1.1e-30 137.5 191 47.6
Aa31LG3G14870 Aethionema arabicum HOM05D007739 ORTHO05D009838 1.4e-30 137.1 187 47.6
BolC9t59287H Brassica oleracea HOM05D007739 ORTHO05D009838 2.9e-28 129.4 189 42.3
A10p25460 Brassica napus HOM05D007739 ORTHO05D009838 4.9e-28 128.6 188 41.0
AT5G12360 Arabidopsis thaliana HOM05D007739 ORTHO05D009838 1.1e-27 127.5 188 44.1
C09p64530 Brassica napus HOM05D007739 ORTHO05D009838 1.9e-27 126.7 189 41.8
BcaC08g44770 Brassica carinata HOM05D007739 ORTHO05D009838 2.4e-27 126.3 102 66.7
C06p23400 Brassica napus HOM05D007739 ORTHO05D009838 1.2e-26 124.0 102 65.7
BolC6t37514H Brassica oleracea HOM05D007739 ORTHO05D009838 1.2e-26 124.0 102 65.7
BraA10t44610Z Brassica rapa HOM05D007739 ORTHO05D009838 3.9e-25 119.0 188 41.0
CARHR200750 Cardamine hirsuta HOM05D007739 ORTHO05D009838 7.4e-24 114.8 171 42.7
Dinv36186 Davidia involucrata HOM05D002367 ORTHO05D002566 1.2e-18 97.4 191 37.7
CiPaw.14G114800 Carya illinoinensis HOM05D007739 ORTHO05D009838 2.1e-18 96.7 198 38.9
Cfa009840 Carpinus fangiana HOM05D007739 ORTHO05D009838 4.6e-18 95.5 154 39.0
Actinidia11663 Actinidia chinensis HOM05D007739 ORTHO05D009838 3.0e-17 92.8 153 39.2
CSS0046040 Camellia sinensis var. sinensis HOM05D007739 ORTHO05D009838 3.9e-17 92.4 186 37.6
Nitab4.5_0001095g0030 Nicotiana tabacum HOM05D007739 ORTHO05D009838 1.5e-16 90.5 187 36.9
C05p53450 Brassica napus HOM05D007739 ORTHO05D009838 3.3e-16 89.4 69 66.7
BolC5t34022H Brassica oleracea HOM05D007739 ORTHO05D009838 3.3e-16 89.4 69 66.7
Migut.D00651 Erythranthe guttata HOM05D007739 ORTHO05D009838 3.3e-16 89.4 202 37.1
DCAR_002115 Daucus carota HOM05D007739 ORTHO05D009838 4.3e-16 89.0 200 35.5
Peaxi162Scf00469g00320 Petunia axillaris HOM05D007739 ORTHO05D009838 1.6e-15 87.0 183 36.1
A05p35270 Brassica napus HOM05D007739 ORTHO05D009838 8.2e-15 84.7 61 70.5
Potri.009G072000 Populus trichocarpa HOM05D007739 ORTHO05D009838 1.4e-14 84.0 194 36.6
Rhsim01G0194300 Rhododendron simsii HOM05D007739 ORTHO05D009838 1.4e-14 84.0 186 37.6
Haze_23208 Corylus avellana HOM05D007739 ORTHO05D009838 2.4e-14 83.2 131 38.9
ECA233G0993 Erigeron canadensis HOM05D007739 ORTHO05D009838 3.1e-14 82.8 182 34.6
PGR119G1777 Punica granatum HOM05D007739 ORTHO05D009838 3.1e-14 82.8 196 35.2
Ca_06221_v3 Cicer arietinum L. HOM05D007739 ORTHO05D009838 5.3e-14 82.0 188 36.2
Lsat_1_v5_gn_5_70921 Lactuca sativa HOM05D007739 ORTHO05D009838 2.0e-13 80.1 186 33.9
Phvul.008G200100 Phaseolus vulgaris HOM05D007739 ORTHO05D009838 2.6e-13 79.7 186 35.5
Sc03g0010980 Simmondsia chinensis HOM05D007739 ORTHO05D009838 3.4e-13 79.3 174 33.3
LjContig00049g0023861 Lotus japonicus HOM05D007739 ORTHO05D009838 4.5e-13 79.0 188 34.0
Sopen07g027120 Solanum pennellii HOM05D007739 ORTHO05D009838 7.6e-13 78.2 192 36.5
Glyma.14G034000 Glycine max HOM05D007739 ORTHO05D009838 1.0e-12 77.8 184 36.4
SalBow6G6289 Salvia bowleyana HOM05D007739 ORTHO05D009838 1.7e-12 77.0 215 31.6
Nitab4.5_0006104g0010 Nicotiana tabacum HOM05D007739 ORTHO05D009838 2.2e-12 76.6 208 32.7
BcaB04g17497 Brassica carinata HOM05D007739 ORTHO05D009838 3.8e-12 75.9 59 67.8
TAR633G0364 Trochodendron aralioides HOM05D007739 ORTHO05D009838 3.8e-12 75.9 183 33.3
SGA_v2.0_scaffold29G12264 Striga asiatica HOM05D007739 ORTHO05D009838 4.9e-12 75.5 196 32.1
GSVIVG01037253001 Vitis vinifera HOM05D007739 ORTHO05D009838 6.5e-12 75.1 189 35.4
BcaB01g01094 Brassica carinata HOM05D000457 ORTHO05D003394 8.4e-12 74.7 60 66.7
Cc01_g05640 Coffea canephora HOM05D007739 ORTHO05D009838 8.4e-12 74.7 191 36.6
Glyma.02G280600 Glycine max HOM05D007739 ORTHO05D009838 1.1e-11 74.3 187 35.3
Solyc07g055110.3 Solanum lycopersicum HOM05D007739 ORTHO05D009838 4.2e-11 72.4 188 35.1
PGSC0003DMG400020420 Solanum tuberosum HOM05D007739 ORTHO05D009838 4.2e-11 72.4 181 34.8
C04p20650 Brassica napus HOM05D007739 ORTHO05D009838 2.1e-10 70.1 50 74.0
BcaB01g02116 Brassica carinata HOM05D007739 ORTHO05D009838 2.7e-10 69.7 54 68.5
BcaC05g28187 Brassica carinata HOM05D007739 ORTHO05D009838 3.5e-10 69.3 67 62.7
C05p42330 Brassica napus HOM05D007739 ORTHO05D009838 3.5e-10 69.3 67 62.7
BcaC06g35816 Brassica carinata HOM05D007739 ORTHO05D039970 6.1e-10 68.6 52 69.2
Cpa.g.sc157.69 Carica papaya HOM05D007739 ORTHO05D009838 1.3e-09 67.4 182 31.3
C07p10560 Brassica napus HOM05D007739 ORTHO05D039970 1.8e-09 67.0 52 69.2
C03p78450 Brassica napus HOM05D007739 ORTHO05D009838 2.3e-09 66.6 52 69.2
BcaB01g02117 Brassica carinata HOM05D007739 ORTHO05D009838 3.0e-09 66.2 52 67.3
TPR.G19359 Trifolium pratense HOM05D007739 ORTHO05D009838 3.0e-09 66.2 190 32.1
C09p20660 Brassica napus HOM05D007739 ORTHO05D009838 3.9e-09 65.9 46 76.1
C04p31590 Brassica napus HOM05D007739 ORTHO05D009838 5.1e-09 65.5 50 68.0
VMungo0647G2062 Vigna mungo HOM05D007739 ORTHO05D009838 2.5e-08 63.2 91 45.1
BcaC02g10206 Brassica carinata HOM05D007739 ORTHO05D009838 4.3e-08 62.4 50 66.0
MSTRG.21351 Avicennia marina HOM05D007739 ORTHO05D009838 9.7e-08 61.2 189 29.1
Oeu001493.2 Olea europaea HOM05D007739 ORTHO05D009838 9.7e-08 61.2 216 31.0
unitig_578.g16651 Utricularia gibba HOM05D007739 ORTHO05D009838 2.8e-07 59.7 169 35.5
TAR633G2358 Trochodendron aralioides HOM05D007739 ORTHO05D009838 3.7e-07 59.3 188 31.9


User provided reference genes

Program Settings