Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s1372 Capsella rubella HOM05D004368 ORTHO05D004990 9.3e-173 610.1 315 100.0
AT3G14110 Arabidopsis thaliana HOM05D004368 ORTHO05D004990 2.3e-147 525.8 318 87.7
Sp3g12370 Schrenkiella parvula HOM05D004368 ORTHO05D004990 1.3e-137 493.4 328 80.8
CARHR088970 Cardamine hirsuta HOM05D004368 ORTHO05D004990 1.4e-136 490.0 321 81.6
C05p53530 Brassica napus HOM05D004368 ORTHO05D004990 1.5e-130 469.9 315 78.7
BolC5t34030H Brassica oleracea HOM05D004368 ORTHO05D004990 1.5e-130 469.9 315 78.7
Thhalv10021156m.g Eutrema salsugineum HOM05D004368 ORTHO05D004990 4.8e-129 464.9 321 78.8
A05p35340 Brassica napus HOM05D004368 ORTHO05D004990 2.7e-127 459.1 323 77.4
BraA05t22344Z Brassica rapa HOM05D004368 ORTHO05D004990 2.7e-127 459.1 323 77.4
C03p46730 Brassica napus HOM05D004368 ORTHO05D004990 1.0e-126 457.2 317 77.9
BcaC01g03958 Brassica carinata HOM05D004368 ORTHO05D004990 1.3e-126 456.8 316 77.8
BcaB04g18818 Brassica carinata HOM05D004368 ORTHO05D004990 6.5e-126 454.5 316 77.5
A03p38620 Brassica napus HOM05D004368 ORTHO05D004990 5.5e-125 451.4 319 78.7
BolC3t16938H Brassica oleracea HOM05D004368 ORTHO05D004990 2.7e-124 449.1 325 75.7
BraA03t13009Z Brassica rapa HOM05D004368 ORTHO05D004990 1.2e-122 443.7 328 76.5
Aa31LG8G1340 Aethionema arabicum HOM05D004368 ORTHO05D004990 1.5e-122 443.4 324 74.7
BcaC05g29122 Brassica carinata HOM05D004368 ORTHO05D004990 2.4e-120 436.0 315 74.0
AL3G26340 Arabidopsis lyrata HOM05D004368 ORTHO05D004990 2.6e-106 389.4 221 93.2
THA.LOC104822665 Tarenaya hassleriana HOM05D004368 ORTHO05D004990 9.5e-101 370.9 335 65.4
Potri.001G166000 Populus trichocarpa HOM05D004368 ORTHO05D004990 8.3e-97 357.8 328 63.1
Actinidia32205 Actinidia chinensis HOM05D004368 ORTHO05D004990 1.6e-95 353.6 254 72.4
CSS0030612 Camellia sinensis var. sinensis HOM05D004368 ORTHO05D004990 2.3e-94 349.7 252 72.6
Duzib235G0527 Durio zibethinus HOM05D004368 ORTHO05D004990 2.3e-94 349.7 246 75.6
Duzib160G0466 Durio zibethinus HOM05D004368 ORTHO05D004990 3.9e-94 349.0 328 63.7
TWI23G0003 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 1.1e-93 347.4 222 81.1
Manes.11G016500 Manihot esculenta HOM05D004368 ORTHO05D004990 1.5e-93 347.1 230 79.1
Gorai.009G145200 Gossypium raimondii HOM05D004368 ORTHO05D004990 1.9e-93 346.7 256 74.2
Sc15g0000580 Simmondsia chinensis HOM05D004368 ORTHO05D004990 1.9e-93 346.7 247 74.5
Thecc.06G124200 Theobroma cacao HOM05D004368 ORTHO05D004990 2.5e-93 346.3 262 74.8
GSVIVG01016719001 Vitis vinifera HOM05D004368 ORTHO05D004990 3.3e-93 345.9 237 76.8
Actinidia21803 Actinidia chinensis HOM05D004368 ORTHO05D004990 5.6e-93 345.1 223 80.7
Eucgr.F02457 Eucalyptus grandis HOM05D004368 ORTHO05D004990 5.6e-93 345.1 321 61.4
COL.COLO4_30792 Corchorus olitorius HOM05D004368 ORTHO05D004990 9.5e-93 344.4 238 77.7
Hma1.2p1_0414F.1_g147650 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 9.5e-93 344.4 251 72.1
Cc06_g01580 Coffea canephora HOM05D004368 ORTHO05D004990 2.1e-92 343.2 228 79.8
Sed0018133 Sechium edule HOM05D004368 ORTHO05D004990 4.7e-92 342.0 225 80.4
Ah.15g095150 Amaranthus hybridus HOM05D004368 ORTHO05D004990 6.2e-92 341.7 223 79.4
FAN09G0342 Fragaria x ananassa HOM05D004368 ORTHO05D004990 6.2e-92 341.7 227 78.9
RcHm_v2.0_Chr2g0146421 Rosa chinensis HOM05D004368 ORTHO05D004990 6.2e-92 341.7 258 71.3
Gohir.D05G141000 Gossypium hirsutum HOM05D004368 ORTHO05D004990 8.1e-92 341.3 226 80.1
QL05p003761 Quercus lobata HOM05D004368 ORTHO05D004990 8.1e-92 341.3 225 79.1
Gohir.A05G138800 Gossypium hirsutum HOM05D004368 ORTHO05D004990 1.8e-91 340.1 226 80.1
Rhsim08G0241200 Rhododendron simsii HOM05D004368 ORTHO05D004990 1.8e-91 340.1 223 78.0
Ciclev10026090m.g Citrus clementina HOM05D004368 ORTHO05D004990 2.3e-91 339.7 328 59.5
CsaV3_3G030850 Cucumis sativus L. HOM05D000945 ORTHO05D000919 2.3e-91 339.7 225 79.1
FvH4_6g35160 Fragaria vesca HOM05D004368 ORTHO05D004990 2.3e-91 339.7 230 77.8
Cpa.g.sc25.148 Carica papaya HOM05D004368 ORTHO05D004990 3.1e-91 339.3 211 83.4
ClCG07G014470 Citrullus lanatus HOM05D004368 ORTHO05D004990 3.1e-91 339.3 225 79.6
MD09G1178400 Malus domestica HOM05D004368 ORTHO05D004990 4.0e-91 339.0 236 76.7
TPR.G29997 Trifolium pratense HOM05D004368 ORTHO05D004990 4.0e-91 339.0 225 77.8
MELO3C022680.2 Cucumis melo HOM05D004368 ORTHO05D004990 5.2e-91 338.6 225 79.1
vmacro06407 Vaccinium macrocarpon HOM05D004368 ORTHO05D004990 5.2e-91 338.6 225 77.3
CiPaw.01G216100 Carya illinoinensis HOM05D004368 ORTHO05D004990 6.8e-91 338.2 233 77.7
PGR119G1615 Punica granatum HOM05D004368 ORTHO05D004990 6.8e-91 338.2 225 77.3
FAN02G3674 Fragaria x ananassa HOM05D004368 ORTHO05D004990 8.9e-91 337.8 231 76.6
FAN05G4100 Fragaria x ananassa HOM05D004368 ORTHO05D004990 8.9e-91 337.8 231 76.6
TAR626G1097 Trochodendron aralioides HOM05D004368 ORTHO05D004990 8.9e-91 337.8 238 74.4
Peaxi162Scf00043g02929 Petunia axillaris HOM05D004368 ORTHO05D004990 1.5e-90 337.0 229 76.9
DCAR_016106 Daucus carota HOM05D004368 ORTHO05D004990 2.6e-90 336.3 221 78.3
Haze_16075 Corylus avellana HOM05D004368 ORTHO05D004990 4.4e-90 335.5 233 77.7
MD17G1148400 Malus domestica HOM05D004368 ORTHO05D004990 4.4e-90 335.5 235 75.3
Hund18675 Selenicereus undatus HOM05D004368 ORTHO05D004990 4.4e-90 335.5 228 78.5
DCAR_022662 Daucus carota HOM05D004368 ORTHO05D004990 1.7e-89 333.6 221 78.7
Nitab4.5_0003342g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 1.7e-89 333.6 233 75.1
EL10Ac7g16443 Beta vulgaris HOM05D004368 ORTHO05D004990 2.9e-89 332.8 235 74.0
Lj5A32G57 Lonicera japonica HOM05D004368 ORTHO05D004990 4.9e-89 332.0 222 77.5
Psat4g167320 Pisum sativum HOM05D004368 ORTHO05D004990 4.9e-89 332.0 226 77.0
AUR62009921 Chenopodium quinoa HOM05D004368 ORTHO05D004990 6.4e-89 331.6 222 77.9
Ca_23409_v3 Cicer arietinum L. HOM05D004368 ORTHO05D004990 6.4e-89 331.6 226 78.3
Lj9C535T4 Lonicera japonica HOM05D004368 ORTHO05D004990 8.3e-89 331.3 238 72.7
ATR0568G120 Amborella trichopoda HOM05D004368 ORTHO05D004990 1.1e-88 330.9 237 75.1
MBI02_g13231_MAGBIO Magnolia biondii HOM05D004368 ORTHO05D004990 1.1e-88 330.9 222 78.8
Nitab4.5_0000845g0110 Nicotiana tabacum HOM05D004368 ORTHO05D004990 1.4e-88 330.5 233 74.7
CAN.G1487.1 Capsicum annuum HOM05D004368 ORTHO05D004990 1.9e-88 330.1 232 74.6
AUR62001444 Chenopodium quinoa HOM05D004368 ORTHO05D004990 2.4e-88 329.7 222 77.0
Medtr8g022040 Medicago truncatula HOM05D004368 ORTHO05D004990 1.2e-87 327.4 219 78.5
FAN14G3095 Fragaria x ananassa HOM05D004368 ORTHO05D004990 2.7e-87 326.2 254 70.1
HanXRQChr15g0497161 Helianthus annuus HOM05D004368 ORTHO05D004990 2.7e-87 326.2 226 76.5
Lj3g0026199 Lotus japonicus HOM05D004368 ORTHO05D004990 3.5e-87 325.9 226 77.0
TAR468G0014 Trochodendron aralioides HOM05D004368 ORTHO05D004990 3.5e-87 325.9 238 71.4
Hma1.2p1_0311F.1_g121230 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 4.6e-87 325.5 238 73.1
Glyma.16G010200 Glycine max HOM05D004368 ORTHO05D004990 6.0e-87 325.1 316 60.1
Gorai.010G235500 Gossypium raimondii HOM05D004368 ORTHO05D004990 6.0e-87 325.1 237 73.8
Solyc09g072880.3 Solanum lycopersicum HOM05D004368 ORTHO05D004990 7.8e-87 324.7 232 73.3
Nn8g38578 Nelumbo nucifera HOM05D004368 ORTHO05D004990 1.3e-86 323.9 220 76.4
PGSC0003DMG400003792 Solanum tuberosum HOM05D004368 ORTHO05D004990 1.3e-86 323.9 232 73.3
Gohir.D06G201700 Gossypium hirsutum HOM05D004368 ORTHO05D004990 1.7e-86 323.6 237 73.4
Sopen09g028680 Solanum pennellii HOM05D004368 ORTHO05D004990 1.7e-86 323.6 232 73.3
ECA247G3177 Erigeron canadensis HOM05D004368 ORTHO05D004990 2.3e-86 323.2 237 73.0
Peaxi162Scf01157g00111 Petunia axillaris HOM05D004368 ORTHO05D004990 3.0e-86 322.8 226 75.2
Aqoxy7G01007 Aquilegia oxysepala HOM05D004368 ORTHO05D004990 3.9e-86 322.4 227 74.9
CAN.G941.28 Capsicum annuum HOM05D004368 ORTHO05D004990 5.1e-86 322.0 236 71.6
Gohir.A06G193900 Gossypium hirsutum HOM05D004368 ORTHO05D004990 5.1e-86 322.0 237 73.0
Sopen09g028700 Solanum pennellii HOM05D004368 ORTHO05D004990 8.6e-86 321.2 227 74.0
VMungo0540G1553 Vigna mungo HOM05D004368 ORTHO05D004990 8.6e-86 321.2 226 76.1
Lalb_Chr17g0343461 Lupinus albus HOM05D004368 ORTHO05D004990 3.3e-85 319.3 222 75.2
Glyma.07G041700 Glycine max HOM05D004368 ORTHO05D004990 7.3e-85 318.2 226 75.2
Sopen06g002970 Solanum pennellii HOM05D004368 ORTHO05D004990 1.6e-84 317.0 236 71.2
Phvul.006G206500 Phaseolus vulgaris HOM05D004368 ORTHO05D004990 2.1e-84 316.6 226 75.7
Solyc06g008160.4 Solanum lycopersicum HOM05D004368 ORTHO05D004990 2.8e-84 316.2 278 63.7
ECA248G3608 Erigeron canadensis HOM05D004368 ORTHO05D004990 6.8e-83 311.6 250 68.4
PSO386G0078 Papaver somniferum HOM05D004368 ORTHO05D004990 8.9e-83 311.2 236 68.6
Lsat_1_v5_gn_4_91400 Lactuca sativa HOM05D004368 ORTHO05D004990 2.0e-82 310.1 218 75.7
Os01g0510600 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 2.0e-82 310.1 202 78.2
unitig_27.g24839 Utricularia gibba HOM05D004368 ORTHO05D004990 2.0e-82 310.1 226 72.6
HPP92_003012 Vanilla planifolia HOM05D004368 ORTHO05D004990 2.0e-82 310.1 220 75.0
HanXRQChr09g0277121 Helianthus annuus HOM05D004368 ORTHO05D004990 3.4e-82 309.3 222 73.9
unitig_27.g24862 Utricularia gibba HOM05D004368 ORTHO05D004990 4.4e-82 308.9 226 72.1
CANSAT56G3889 Cannabis sativa HOM05D004368 ORTHO05D004990 5.8e-82 308.5 245 67.8
PSO724G0024 Papaver somniferum HOM05D004368 ORTHO05D004990 5.8e-82 308.5 235 68.9
Sabra01G0127300 Salix brachista HOM05D004368 ORTHO05D004990 5.8e-82 308.5 296 60.8
Oeu064511.1 Olea europaea HOM05D004368 ORTHO05D004990 2.2e-81 306.6 210 76.7
SalBow5G3644 Salvia bowleyana HOM05D004368 ORTHO05D004990 1.9e-80 303.5 220 73.2
CDE05G2024 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 2.4e-80 303.1 222 71.6
SalBow5G0362 Salvia bowleyana HOM05D004368 ORTHO05D004990 5.4e-80 302.0 284 61.3
Zm00001eb308830 Zea mays HOM05D004368 ORTHO05D004990 9.2e-80 301.2 202 75.7
CDE04G0878 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 2.7e-79 299.7 217 72.8
unitig_699.g19383 Utricularia gibba HOM05D004368 ORTHO05D004990 2.7e-79 299.7 231 68.8
Migut.L01998 Erythranthe guttata HOM05D004368 ORTHO05D004990 6.0e-79 298.5 248 65.3
Lalb_Chr04g0253731 Lupinus albus HOM05D004368 ORTHO05D004990 1.3e-78 297.4 222 70.7
Atru.chr1.4073 Acer truncatum HOM05D004368 ORTHO05D004990 3.6e-76 289.3 177 85.9
arahy.Tifrunner.gnm1.ann1.26KYL2 Arachis hypogaea HOM05D004368 ORTHO05D004990 6.2e-76 288.5 232 67.2
arahy.Tifrunner.gnm1.ann1.AFL61P Arachis hypogaea HOM05D004368 ORTHO05D004990 1.4e-75 287.3 177 81.4
Nn6g35672 Nelumbo nucifera HOM05D004368 ORTHO05D004990 1.5e-74 283.9 238 66.0
Nitab4.5_0006980g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 1.9e-69 266.9 169 81.1
Gorai.004G102400 Gossypium raimondii HOM05D004368 ORTHO05D004990 2.5e-69 266.5 190 76.3
Os02g0586800 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 2.5e-69 266.5 218 67.0
Nitab4.5_0000326g0270 Nicotiana tabacum HOM05D004368 ORTHO05D004990 4.9e-65 252.3 166 78.3
Atru.chr1.4083 Acer truncatum HOM05D004368 ORTHO05D004990 5.1e-62 242.3 194 70.1
Gohir.D08G096333 Gossypium hirsutum HOM05D004368 ORTHO05D004990 6.7e-62 241.9 190 72.1
Dinv37846 Davidia involucrata HOM05D004368 ORTHO05D004990 9.6e-61 238.0 171 71.9
Gorai.001G096600 Gossypium raimondii HOM05D004368 ORTHO05D004990 1.3e-60 237.7 207 65.2
Gohir.D07G090325 Gossypium hirsutum HOM05D004368 ORTHO05D004990 5.3e-59 232.3 173 73.4
Dinv20409 Davidia involucrata HOM05D004368 ORTHO05D004990 6.9e-59 231.9 171 70.8
AagrBONN_evm.TU.Sc2ySwM_228.3011 Anthoceros agrestis HOM05D004368 ORTHO05D004990 4.5e-58 229.2 214 60.3
FAN05G2230 Fragaria x ananassa HOM05D004368 ORTHO05D004990 1.3e-57 227.6 164 75.0
Mapoly0108s0002 Marchantia polymorpha HOM05D004368 ORTHO05D004990 1.3e-57 227.6 237 55.7
Mapoly0110s0050 Marchantia polymorpha HOM05D004368 ORTHO05D004990 1.3e-57 227.6 237 55.7
CDE05G2107 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 3.8e-57 226.1 221 58.8
SGA_v2.0_scaffold110G31269 Striga asiatica HOM05D004368 ORTHO05D004990 3.2e-56 223.0 312 45.8
Prupe.3G037600 Prunus persica HOM05D004368 ORTHO05D004990 1.6e-55 220.7 168 71.4
HPP92_027544 Vanilla planifolia HOM05D004368 ORTHO05D004990 6.0e-55 218.8 159 74.8
CBR_g39266 Chara braunii HOM05D004368 ORTHO05D004990 2.6e-50 203.4 201 56.2
Pp3c11_3130 Physcomitrium patens HOM05D004368 ORTHO05D004990 3.2e-48 196.4 185 56.8
SMO141G0180 Selaginella moellendorffii HOM05D004368 ORTHO05D004990 5.5e-48 195.7 186 56.5
Rhsim03G0211800 Rhododendron simsii HOM05D004368 ORTHO05D004990 3.9e-46 189.5 235 47.7
Zm00001eb245590 Zea mays HOM05D004368 ORTHO05D004990 2.0e-42 177.2 154 63.6
TWI14G0995 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 1.4e-30 137.9 346 33.2
Cre10.g460050 Chlamydomonas reinhardtii HOM05D004368 ORTHO05D004990 6.3e-28 129.0 242 36.0
PGSC0003DMG400014712 Solanum tuberosum HOM05D004368 ORTHO05D004990 1.9e-24 117.5 68 82.4
MCO11G340 Micromonas commoda HOM05D004368 ORTHO05D004990 1.6e-18 97.8 198 34.8
PRCOL_00003238 Prasinoderma coloniale HOM05D004368 ORTHO05D004990 3.5e-18 96.7 209 34.4
MCO14G328 Micromonas commoda HOM05D004368 ORTHO05D004990 1.6e-15 87.8 235 30.6
BcaB04g18771 Brassica carinata HOM05D004368 ORTHO05D004990 6.1e-15 85.9 63 69.8
PRCOL_00003077 Prasinoderma coloniale HOM05D004368 ORTHO05D004990 1.0e-14 85.1 223 31.8
MCO15G457 Micromonas commoda HOM05D004368 ORTHO05D268172 1.7e-09 67.8 181 32.0
SGA_v2.0_scaffold382G50397 Striga asiatica HOM05D004368 ORTHO05D004990 2.9e-09 67.0 42 69.0
CBR_g29854 Chara braunii HOM05D004368 ORTHO05D004990 3.8e-09 66.6 79 51.9
TAR624G0904 Trochodendron aralioides HOM05D004368 ORTHO05D004990 1.9e-08 64.3 45 71.1
TAR624G0589 Trochodendron aralioides HOM05D004368 ORTHO05D004990 5.5e-08 62.8 41 70.7
RcHm_v2.0_Chr5g0074611 Rosa chinensis HOM05D004368 ORTHO05D004990 4.7e-07 59.7 57 54.4


User provided reference genes

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