Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s1351 Capsella rubella HOM05D004436 ORTHO05D005179 1.7e-244 849.0 439 100.0
AL3G26120 Arabidopsis lyrata HOM05D004436 ORTHO05D005179 2.0e-181 639.4 451 73.8
AT3G13940 Arabidopsis thaliana HOM05D004436 ORTHO05D005179 2.4e-171 605.9 446 70.6
CARHR088750 Cardamine hirsuta HOM05D004436 ORTHO05D005179 1.4e-142 510.4 424 62.5
Aa31LG8G1130 Aethionema arabicum HOM05D004436 ORTHO05D005179 6.1e-138 495.0 433 60.0
Sp3g12180 Schrenkiella parvula HOM05D004436 ORTHO05D005179 1.0e-137 494.2 441 58.7
Thhalv10020760m.g Eutrema salsugineum HOM05D004436 ORTHO05D005179 3.3e-136 489.2 443 59.4
THA.LOC104804933 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 1.0e-124 451.1 400 58.2
Cpa.g.sc25.86 Carica papaya HOM05D004436 ORTHO05D005179 1.7e-116 423.7 449 50.3
BcaB04g20967 Brassica carinata HOM05D004436 ORTHO05D005179 3.0e-113 412.9 451 51.4
BcaC09g48383 Brassica carinata HOM05D004436 ORTHO05D005179 4.0e-113 412.5 432 52.3
C01p50660 Brassica napus HOM05D004436 ORTHO05D005179 4.0e-113 412.5 432 52.3
BolC1t05015H Brassica oleracea HOM05D004436 ORTHO05D005179 4.0e-113 412.5 432 52.3
A01p39710 Brassica napus HOM05D004436 ORTHO05D005179 4.1e-110 402.5 433 51.5
BraA01t04010Z Brassica rapa HOM05D004436 ORTHO05D005179 5.4e-110 402.1 433 51.5
Thecc.03G227200 Theobroma cacao HOM05D004436 ORTHO05D005179 4.9e-103 379.0 456 46.9
CiPaw.01G221800 Carya illinoinensis HOM05D004436 ORTHO05D005179 1.4e-102 377.5 399 49.1
CiPaw.05G181900 Carya illinoinensis HOM05D004436 ORTHO05D005179 1.4e-102 377.5 399 49.4
Eucgr.F03167 Eucalyptus grandis HOM05D004436 ORTHO05D005179 8.6e-100 368.2 399 46.4
Duzib205G0267 Durio zibethinus HOM05D004436 ORTHO05D005179 2.5e-99 366.7 448 47.1
Ciclev10025597m.g Citrus clementina HOM05D004436 ORTHO05D005179 3.1e-97 359.8 402 47.3
Gohir.D03G171700 Gossypium hirsutum HOM05D004436 ORTHO05D005179 1.5e-96 357.5 441 45.6
PGR119G1065 Punica granatum HOM05D004436 ORTHO05D005179 3.4e-96 356.3 398 44.7
Glyma.15G165300 Glycine max HOM05D004436 ORTHO05D005179 7.5e-96 355.1 390 46.9
Gorai.003G182300 Gossypium raimondii HOM05D004436 ORTHO05D005179 1.7e-95 354.0 441 45.1
Gohir.A03G000500 Gossypium hirsutum HOM05D004436 ORTHO05D005179 2.9e-95 353.2 441 45.1
Manes.04G142200 Manihot esculenta HOM05D004436 ORTHO05D005179 4.1e-94 349.4 452 43.1
GSVIVG01016817001 Vitis vinifera HOM05D004436 ORTHO05D005179 4.1e-94 349.4 392 47.4
Dinv03512 Davidia involucrata HOM05D004436 ORTHO05D005179 5.4e-94 349.0 402 46.0
Lj6g0016044 Lotus japonicus HOM05D004436 ORTHO05D005179 5.4e-94 349.0 442 45.2
CsaV3_7G034640 Cucumis sativus L. HOM05D004436 ORTHO05D005179 6.0e-93 345.5 398 46.5
TAR375G0086 Trochodendron aralioides HOM05D004436 ORTHO05D005179 6.0e-93 345.5 408 44.9
Potri.001G198600 Populus trichocarpa HOM05D004436 ORTHO05D005179 1.3e-92 344.4 430 43.0
MELO3C024372.2 Cucumis melo HOM05D004436 ORTHO05D005179 3.9e-92 342.8 398 45.2
Manes.11G023100 Manihot esculenta HOM05D004436 ORTHO05D005179 8.6e-92 341.7 454 43.8
ClCG09G000840 Citrullus lanatus HOM05D004436 ORTHO05D005179 5.6e-91 339.0 400 43.8
TWI23G0436 Tripterygium wilfordii HOM05D004436 ORTHO05D005179 5.6e-91 339.0 434 43.5
Lj5A40G74 Lonicera japonica HOM05D004436 ORTHO05D005179 1.2e-90 337.8 420 43.8
CSS0015890 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 3.6e-90 336.3 393 45.5
Sed0007780 Sechium edule HOM05D004436 ORTHO05D005179 6.2e-90 335.5 433 42.5
Actinidia32167 Actinidia chinensis HOM05D004436 ORTHO05D005179 8.0e-90 335.1 450 42.2
Hma1.2p1_0496F.1_g166100 Hydrangea macrophylla HOM05D004436 ORTHO05D005179 8.0e-90 335.1 412 44.9
Phvul.009G236700 Phaseolus vulgaris HOM05D004436 ORTHO05D005179 1.8e-89 334.0 393 45.3
COL.COLO4_30482 Corchorus olitorius HOM05D004436 ORTHO05D005179 5.2e-89 332.4 416 44.7
CANSAT56G1493 Cannabis sativa HOM05D004436 ORTHO05D005179 2.6e-88 330.1 397 44.3
DCAR_026403 Daucus carota HOM05D004436 ORTHO05D005179 7.5e-88 328.6 403 42.9
Prupe.3G044800 Prunus persica HOM05D004436 ORTHO05D005179 2.2e-87 327.0 396 45.7
CAN.G540.4 Capsicum annuum HOM05D004436 ORTHO05D005179 2.9e-87 326.6 400 44.2
Lalb_Chr08g0233321 Lupinus albus HOM05D004436 ORTHO05D005179 3.7e-87 326.2 433 41.1
arahy.Tifrunner.gnm1.ann1.4RDH3B Arachis hypogaea HOM05D004436 ORTHO05D005179 4.9e-87 325.9 408 43.6
Dinv30366 Davidia involucrata HOM05D004436 ORTHO05D005179 8.3e-87 325.1 357 48.5
vmacro22224 Vaccinium macrocarpon HOM05D004436 ORTHO05D005179 1.4e-86 324.3 399 43.4
Sed0020704 Sechium edule HOM05D004436 ORTHO05D005179 2.4e-86 323.6 395 45.6
RcHm_v2.0_Chr2g0144531 Rosa chinensis HOM05D004436 ORTHO05D005179 3.2e-86 323.2 410 43.9
Ca_02096_v3 Cicer arietinum L. HOM05D004436 ORTHO05D005179 4.1e-86 322.8 397 42.3
Sopen06g018390 Solanum pennellii HOM05D004436 ORTHO05D005179 7.1e-86 322.0 439 43.1
arahy.Tifrunner.gnm1.ann1.0TY6IG Arachis hypogaea HOM05D004436 ORTHO05D005179 9.2e-86 321.6 408 42.6
Sabra01G0155800 Salix brachista HOM05D004436 ORTHO05D005179 1.2e-85 321.2 438 41.3
Haze_15997 Corylus avellana HOM05D004436 ORTHO05D005179 2.7e-85 320.1 434 40.6
Sc12g0010440 Simmondsia chinensis HOM05D004436 ORTHO05D005179 4.6e-85 319.3 416 43.0
Lsat_1_v5_gn_5_135221 Lactuca sativa HOM05D004436 ORTHO05D005179 6.0e-85 318.9 421 43.7
Oeu044709.1 Olea europaea HOM05D004436 ORTHO05D005179 6.0e-85 318.9 401 43.6
Solyc06g053330.4 Solanum lycopersicum HOM05D004436 ORTHO05D005179 1.3e-84 317.8 439 42.8
PGSC0003DMG400016304 Solanum tuberosum HOM05D004436 ORTHO05D005179 2.3e-84 317.0 434 42.4
Atru.chr1.3808 Acer truncatum HOM05D004436 ORTHO05D005179 5.1e-84 315.8 400 44.0
CSS0033207 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 5.1e-84 315.8 393 43.5
HanXRQChr10g0312341 Helianthus annuus HOM05D004436 ORTHO05D005179 6.6e-84 315.5 398 45.0
FAN09G2135 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.1e-83 314.7 415 42.4
COL.COLO4_17027 Corchorus olitorius HOM05D004436 ORTHO05D005179 1.9e-83 313.9 349 48.4
FAN05G5343 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.9e-83 313.9 416 42.1
Hund20819 Selenicereus undatus HOM05D004436 ORTHO05D005179 2.5e-83 313.5 426 42.3
Carub.0003s3547 Capsella rubella HOM05D004436 ORTHO05D005179 9.5e-83 311.6 378 48.9
Rhsim08G0236100 Rhododendron simsii HOM05D004436 ORTHO05D005179 9.5e-83 311.6 434 40.1
Medtr7g104810 Medicago truncatula HOM05D004436 ORTHO05D005179 6.2e-82 308.9 406 41.4
FAN02G3564 Fragaria x ananassa HOM05D004436 ORTHO05D005179 8.1e-82 308.5 444 40.5
Nitab4.5_0000035g0090 Nicotiana tabacum HOM05D004436 ORTHO05D005179 8.1e-82 308.5 437 39.8
FvH4_6g34180 Fragaria vesca HOM05D004436 ORTHO05D005179 1.4e-81 307.8 431 41.5
Peaxi162Scf00647g00219 Petunia axillaris HOM05D004436 ORTHO05D005179 1.4e-81 307.8 405 42.2
Oeu047041.1 Olea europaea HOM05D004436 ORTHO05D005179 1.8e-81 307.4 392 43.4
ECA234G4408 Erigeron canadensis HOM05D004436 ORTHO05D005179 8.9e-81 305.1 384 44.5
MD09G1187900 Malus domestica HOM05D004436 ORTHO05D005179 8.9e-81 305.1 445 40.7
Peaxi162Scf00943g00014 Petunia axillaris HOM05D004436 ORTHO05D005179 2.0e-80 303.9 425 41.2
Migut.D00948 Erythranthe guttata HOM05D004436 ORTHO05D005179 2.6e-80 303.5 431 40.1
RcHm_v2.0_Chr2g0166351 Rosa chinensis HOM05D004436 ORTHO05D005179 1.7e-79 300.8 413 41.6
FAN26G0630 Fragaria x ananassa HOM05D004436 ORTHO05D005179 3.7e-79 299.7 419 42.0
Nitab4.5_0012713g0010 Nicotiana tabacum HOM05D004436 ORTHO05D005179 2.4e-78 297.0 401 41.9
MSTRG.22562 Avicennia marina HOM05D004436 ORTHO05D005179 3.2e-78 296.6 439 39.9
Medtr2g037880 Medicago truncatula HOM05D004436 ORTHO05D005179 7.1e-78 295.4 428 39.3
FAN14G2695 Fragaria x ananassa HOM05D004436 ORTHO05D005179 3.5e-77 293.1 467 38.8
Aqoxy2G00706 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 3.0e-76 290.0 401 38.4
PSO135G0558 Papaver somniferum HOM05D004436 ORTHO05D005179 5.1e-76 289.3 411 40.1
PSO724G1089 Papaver somniferum HOM05D004436 ORTHO05D005179 6.6e-76 288.9 411 40.1
SGA_v2.0_scaffold68G22895 Striga asiatica HOM05D004436 ORTHO05D005179 9.6e-75 285.0 399 40.4
EL10Ac7g16378 Beta vulgaris HOM05D004436 ORTHO05D005179 1.6e-74 284.3 419 38.2
EL10Ac7g16380 Beta vulgaris HOM05D004436 ORTHO05D005179 2.8e-74 283.5 420 38.1
Psat1g144000 Pisum sativum HOM05D004436 ORTHO05D005179 4.7e-74 282.7 430 39.1
FvH4_6g47280 Fragaria vesca HOM05D004436 ORTHO05D005179 3.1e-73 280.0 408 39.5
Cc04_g01610 Coffea canephora HOM05D004436 ORTHO05D005179 7.6e-72 275.4 313 46.0
Medtr2g037460 Medicago truncatula HOM05D004436 ORTHO05D005179 7.6e-72 275.4 426 38.5
AUR62009860 Chenopodium quinoa HOM05D004436 ORTHO05D005179 2.9e-71 273.5 416 37.7
CDE07G0038 Ceratophyllum demersum HOM05D004436 ORTHO05D005179 1.1e-70 271.6 431 38.5
Ah.07g197300 Amaranthus hybridus HOM05D004436 ORTHO05D005179 1.4e-70 271.2 420 36.2
QL05p009436 Quercus lobata HOM05D004436 ORTHO05D005179 2.4e-70 270.4 607 30.5
unitig_26.g9010 Utricularia gibba HOM05D000572 ORTHO05D002399 2.7e-69 266.9 441 36.7
Rhsim10G0150900 Rhododendron simsii HOM05D004436 ORTHO05D005179 1.3e-68 264.6 508 35.8
TPR.G13789 Trifolium pratense HOM05D004436 ORTHO05D005179 3.9e-68 263.1 407 38.3
AUR62001510 Chenopodium quinoa HOM05D004436 ORTHO05D005179 4.8e-66 256.1 442 35.3
THA.LOC104822769 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 6.4e-63 245.7 269 51.7
Actinidia21779 Actinidia chinensis HOM05D004436 ORTHO05D005179 6.0e-61 239.2 443 34.8
FAN24G2018 Fragaria x ananassa HOM05D004436 ORTHO05D005179 8.1e-58 228.8 392 36.7
ATR0762G049 Amborella trichopoda HOM05D004436 ORTHO05D005179 1.4e-57 228.0 445 32.6
Lj6g0018808 Lotus japonicus HOM05D004436 ORTHO05D005179 2.0e-56 224.2 248 48.4
HPP92_009424 Vanilla planifolia HOM05D004436 ORTHO05D005179 9.9e-56 221.9 405 35.1
FvH4_2g14600 Fragaria vesca HOM05D004436 ORTHO05D005179 7.1e-54 215.7 300 41.0
Nitab4.5_0004287g0020 Nicotiana tabacum HOM05D004436 ORTHO05D005179 9.3e-54 215.3 258 43.8
Peaxi162Scf00060g02815 Petunia axillaris HOM05D004436 ORTHO05D005179 3.5e-53 213.4 429 32.9
Nn6g35749 Nelumbo nucifera HOM05D004436 ORTHO05D005179 2.3e-52 210.7 401 33.2
MD17G1172300 Malus domestica HOM05D004436 ORTHO05D005179 1.1e-51 208.4 357 37.3
Os11g0615100 Oryza sativa ssp. japonica HOM05D004436 ORTHO05D005179 4.3e-51 206.5 398 34.2
Zm00001eb166800 Zea mays HOM05D004436 ORTHO05D005179 1.8e-49 201.1 402 32.6
TPR.G16505 Trifolium pratense HOM05D004436 ORTHO05D005179 3.4e-48 196.8 220 45.0
Ca_27339_v3 Cicer arietinum L. HOM05D004436 ORTHO05D005179 7.6e-48 195.7 299 37.5
AagrBONN_evm.TU.Sc2ySwM_368.2707 Anthoceros agrestis HOM05D004436 ORTHO05D005179 1.8e-41 174.5 459 28.3
DCAR_023423 Daucus carota HOM05D004436 ORTHO05D005179 9.0e-41 172.2 232 40.9
Ah.08g216510 Amaranthus hybridus HOM05D004436 ORTHO05D005179 2.6e-40 170.6 308 34.1
Pp3c8_24340 Physcomitrium patens HOM05D004436 ORTHO05D005179 7.6e-40 169.1 436 29.8
FAN14G5104 Fragaria x ananassa HOM05D002326 ORTHO05D005179 4.3e-35 153.3 229 39.3
Aqoxy7G00272 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 1.3e-34 151.8 238 36.6
SEGI_28110 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 1.4e-30 138.3 328 30.5
THA.LOC104822775 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 1.9e-30 137.9 154 48.7
AL1G64440 Arabidopsis lyrata HOM05D004436 ORTHO05D005179 3.0e-28 130.6 157 49.7
SEGI_22335 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 1.1e-27 128.6 266 31.2
Aqoxy2G02914 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 1.3e-26 125.2 140 42.9
FAN27G1625 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.3e-26 125.2 269 32.0
FAN20G3048 Fragaria x ananassa HOM05D004436 ORTHO05D005179 6.9e-25 119.4 239 34.7
Mapoly0063s0055 Marchantia polymorpha HOM05D004436 ORTHO05D005179 6.9e-25 119.4 341 29.6
FAN09G3702 Fragaria x ananassa HOM05D002326 ORTHO05D005179 1.5e-24 118.2 397 29.0
CBR_g45967 Chara braunii HOM05D004436 ORTHO05D005179 2.9e-23 114.0 456 26.3
Oeu004353.1 Olea europaea HOM05D004436 ORTHO05D005179 2.9e-23 114.0 103 51.5
FAN02G4131 Fragaria x ananassa HOM05D002326 ORTHO05D005179 3.8e-23 113.6 398 27.9
Haze_06394 Corylus avellana HOM05D004436 ORTHO05D005179 1.6e-21 108.2 185 39.5
FAN15G1241 Fragaria x ananassa HOM05D004436 ORTHO05D005179 5.1e-20 103.2 106 50.0
PGSC0003DMG400002436 Solanum tuberosum HOM05D004436 ORTHO05D005179 1.3e-18 98.6 87 52.9
AUR62000997 Chenopodium quinoa HOM05D004436 ORTHO05D005179 4.8e-18 96.7 167 36.5
Dinv21190 Davidia involucrata HOM05D004436 ORTHO05D005179 1.1e-17 95.5 107 43.0
ATR0185G001 Amborella trichopoda HOM05D004436 ORTHO05D005179 5.3e-17 93.2 164 32.3
Aqoxy2G02915 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 4.5e-16 90.1 98 45.9
TPR.G16496 Trifolium pratense HOM05D004436 ORTHO05D005179 1.1e-11 75.5 183 30.6
SMO144G0124 Selaginella moellendorffii HOM05D004436 ORTHO05D005179 7.5e-11 72.8 94 37.2
Peaxi162Scf01131g00007 Petunia axillaris HOM05D004436 ORTHO05D005179 3.1e-09 67.4 131 31.3
SEGI_36774 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 2.0e-08 64.7 123 29.3
PSO017G0055 Papaver somniferum HOM05D004436 ORTHO05D005179 2.9e-07 60.8 118 36.4


User provided reference genes

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