Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s1344 Capsella rubella HOM05D006233 ORTHO05D007247 8.5e-76 287.0 148 100.0
AL3G26050 Arabidopsis lyrata HOM05D006233 ORTHO05D007247 4.1e-70 268.1 148 92.6
AT3G13882 Arabidopsis thaliana HOM05D006233 ORTHO05D007247 7.7e-69 263.8 148 90.5
BolC3t16928H Brassica oleracea HOM05D006233 ORTHO05D007247 2.0e-64 249.2 149 88.6
A03p38490 Brassica napus HOM05D006233 ORTHO05D007247 3.3e-64 248.4 149 88.6
Thhalv10021711m.g Eutrema salsugineum HOM05D006233 ORTHO05D007247 4.4e-64 248.1 148 87.2
BcaC01g03969 Brassica carinata HOM05D006233 ORTHO05D007247 5.7e-64 247.7 149 87.2
C03p46650 Brassica napus HOM05D006233 ORTHO05D007247 1.3e-63 246.5 149 87.9
BcaB04g18809 Brassica carinata HOM05D006233 ORTHO05D007247 3.7e-63 245.0 149 85.9
BcaB06g25428 Brassica carinata HOM05D006233 ORTHO05D007247 3.7e-63 245.0 149 87.2
Sp3g12110 Schrenkiella parvula HOM05D006233 ORTHO05D007247 4.8e-63 244.6 150 88.0
BcaC05g29149 Brassica carinata HOM05D006233 ORTHO05D007247 6.3e-63 244.2 148 86.5
C05p53920 Brassica napus HOM05D006233 ORTHO05D007247 6.3e-63 244.2 148 86.5
CARHR088680 Cardamine hirsuta HOM05D006233 ORTHO05D007247 8.2e-63 243.8 150 86.0
BraA03t13001Z Brassica rapa HOM05D006233 ORTHO05D007247 5.3e-62 241.1 150 87.3
BraA03t12999Z Brassica rapa HOM05D006233 ORTHO05D007247 1.2e-61 240.0 153 85.0
Aa31LG8G1060 Aethionema arabicum HOM05D006233 ORTHO05D007247 3.8e-60 235.0 148 82.4
THA.LOC104822640 Tarenaya hassleriana HOM05D006233 ORTHO05D007247 1.5e-48 196.4 170 64.1
BolC5t34058H Brassica oleracea HOM05D006233 ORTHO05D007247 7.0e-46 187.6 154 68.2
A03p38520 Brassica napus HOM05D006233 ORTHO05D007247 5.9e-45 184.5 125 81.6
RcHm_v2.0_Chr2g0143671 Rosa chinensis HOM05D006233 ORTHO05D007247 2.0e-40 169.5 151 63.6
MD17G1173900 Malus domestica HOM05D006233 ORTHO05D007247 3.4e-40 168.7 149 63.8
Manes.11G024800 Manihot esculenta HOM05D006233 ORTHO05D007247 2.2e-39 166.0 149 63.8
BraA05t22362Z Brassica rapa HOM05D006233 ORTHO05D007247 2.8e-39 165.6 179 58.7
CANSAT56G1839 Cannabis sativa HOM05D006233 ORTHO05D007247 2.8e-39 165.6 150 60.7
Cpa.g.sc25.68 Carica papaya HOM05D006233 ORTHO05D007247 3.7e-39 165.2 148 60.1
FvH4_6g33800 Fragaria vesca HOM05D006233 ORTHO05D007247 3.7e-39 165.2 150 62.0
FAN14G4045 Fragaria x ananassa HOM05D006233 ORTHO05D007247 3.7e-39 165.2 150 62.0
Prupe.3G047000 Prunus persica HOM05D006233 ORTHO05D007247 8.3e-39 164.1 150 62.7
FAN05G2224 Fragaria x ananassa HOM05D006233 ORTHO05D007247 1.1e-38 163.7 151 62.3
FAN09G3309 Fragaria x ananassa HOM05D006233 ORTHO05D007247 2.4e-38 162.5 150 60.7
Manes.04G140700 Manihot esculenta HOM05D006233 ORTHO05D007247 3.1e-38 162.2 150 62.7
Actinidia26050 Actinidia chinensis HOM05D006233 ORTHO05D007247 5.4e-38 161.4 150 58.7
Cfa003566 Carpinus fangiana HOM05D006233 ORTHO05D007247 9.2e-38 160.6 151 60.3
CiPaw.02G138900 Carya illinoinensis HOM05D006233 ORTHO05D007247 1.6e-37 159.8 151 60.9
TWI38G0279 Tripterygium wilfordii HOM05D006233 ORTHO05D007247 1.6e-37 159.8 148 58.1
COL.COLO4_38606 Corchorus olitorius HOM05D006233 ORTHO05D007247 2.0e-37 159.5 148 58.8
MD09G1191200 Malus domestica HOM05D006233 ORTHO05D007247 2.7e-37 159.1 150 60.0
TWI63G1789 Tripterygium wilfordii HOM05D006233 ORTHO05D007247 2.7e-37 159.1 148 58.1
Actinidia39105 Actinidia chinensis HOM05D006233 ORTHO05D007247 3.5e-37 158.7 150 58.0
Atru.chr1.3781 Acer truncatum HOM05D006233 ORTHO05D007247 4.5e-37 158.3 149 61.7
Gohir.A06G191200 Gossypium hirsutum HOM05D006233 ORTHO05D007247 4.5e-37 158.3 149 59.7
Gohir.D06G199600 Gossypium hirsutum HOM05D006233 ORTHO05D007247 1.3e-36 156.8 149 59.7
Thecc.06G113700 Theobroma cacao HOM05D006233 ORTHO05D007247 1.3e-36 156.8 148 56.8
Gorai.010G232600 Gossypium raimondii HOM05D006233 ORTHO05D007247 1.7e-36 156.4 149 59.7
Ciclev10026736m.g Citrus clementina HOM05D006233 ORTHO05D007247 5.0e-36 154.8 150 59.3
Ca_23330_v3 Cicer arietinum L. HOM05D006233 ORTHO05D007247 2.5e-35 152.5 151 61.6
Medtr8g017420 Medicago truncatula HOM05D006233 ORTHO05D007247 9.5e-35 150.6 150 59.3
PGR119G1625 Punica granatum HOM05D006233 ORTHO05D007247 1.2e-34 150.2 153 56.9
arahy.Tifrunner.gnm1.ann1.LDN3BT Arachis hypogaea HOM05D006233 ORTHO05D007247 1.6e-34 149.8 150 59.3
CiPaw.01G223500 Carya illinoinensis HOM05D006233 ORTHO05D007247 2.8e-34 149.1 151 55.6
CsaV3_3G043640 Cucumis sativus L. HOM05D006233 ORTHO05D007247 2.8e-34 149.1 151 57.6
AUR62038159 Chenopodium quinoa HOM05D006233 ORTHO05D007247 4.7e-34 148.3 164 57.9
Hma1.2p1_1128F.1_g259780 Hydrangea macrophylla HOM05D006233 ORTHO05D007247 4.7e-34 148.3 152 58.6
Haze_15979 Corylus avellana HOM05D006233 ORTHO05D007247 1.4e-33 146.7 173 50.3
Lj5A43T71 Lonicera japonica HOM05D006233 ORTHO05D007247 1.4e-33 146.7 160 55.6
Phvul.010G137600 Phaseolus vulgaris HOM05D006233 ORTHO05D007247 1.4e-33 146.7 150 60.0
BcaC05g29150 Brassica carinata HOM05D006233 ORTHO05D007247 3.0e-33 145.6 149 63.8
MELO3C013069.2 Cucumis melo HOM05D006233 ORTHO05D007247 4.0e-33 145.2 151 57.0
Dinv04018 Davidia involucrata HOM05D006233 ORTHO05D007247 5.2e-33 144.8 149 56.4
Potri.003G041100 Populus trichocarpa HOM05D006233 ORTHO05D007247 6.8e-33 144.4 150 57.3
Nn6g35511 Nelumbo nucifera HOM05D006233 ORTHO05D007247 1.2e-32 143.7 147 53.1
AUR62009846 Chenopodium quinoa HOM05D006233 ORTHO05D007247 3.4e-32 142.1 161 57.1
SGA_v2.0_scaffold4G02044 Striga asiatica HOM05D006233 ORTHO05D007247 9.8e-32 140.6 149 55.7
Migut.D00962 Erythranthe guttata HOM05D006233 ORTHO05D007247 1.3e-31 140.2 160 53.8
TPR.G3185 Trifolium pratense HOM05D006233 ORTHO05D007247 1.3e-31 140.2 151 53.6
Aqoxy7G01184 Aquilegia oxysepala HOM05D006233 ORTHO05D007247 1.7e-31 139.8 153 51.6
EL10Ac7g16362 Beta vulgaris HOM05D006233 ORTHO05D007247 2.2e-31 139.4 164 56.1
Eucgr.F03142 Eucalyptus grandis HOM05D006233 ORTHO05D007247 2.2e-31 139.4 150 52.7
Dinv37902 Davidia involucrata HOM05D006233 ORTHO05D007247 2.9e-31 139.0 148 53.4
Hund20828 Selenicereus undatus HOM05D006233 ORTHO05D007247 2.9e-31 139.0 169 51.5
Psat4g187760 Pisum sativum HOM05D006233 ORTHO05D007247 3.7e-31 138.7 142 57.0
GSVIVG01016799001 Vitis vinifera HOM05D006233 ORTHO05D007247 8.3e-31 137.5 151 53.0
Sed0001061 Sechium edule HOM05D006233 ORTHO05D007247 2.4e-30 136.0 152 54.6
ClCG07G013950 Citrullus lanatus HOM05D006233 ORTHO05D007247 3.2e-30 135.6 143 55.9
HanXRQChr10g0312401 Helianthus annuus HOM05D006233 ORTHO05D007247 3.2e-30 135.6 150 53.3
Nitab4.5_0005918g0010 Nicotiana tabacum HOM05D006233 ORTHO05D007247 3.2e-30 135.6 149 54.4
A05p35530 Brassica napus HOM05D006233 ORTHO05D007247 4.1e-30 135.2 113 69.9
Cc04_g01780 Coffea canephora HOM05D006233 ORTHO05D007247 4.1e-30 135.2 149 55.7
Lj5g0016703 Lotus japonicus HOM05D006233 ORTHO05D007247 4.1e-30 135.2 157 55.4
Nitab4.5_0000255g0250 Nicotiana tabacum HOM05D006233 ORTHO05D007247 4.1e-30 135.2 149 53.7
Sopen06g022210 Solanum pennellii HOM05D006233 ORTHO05D007247 4.1e-30 135.2 151 53.6
VMungo0331G0931 Vigna mungo HOM05D006233 ORTHO05D007247 4.1e-30 135.2 150 58.0
PSO210G1065 Papaver somniferum HOM05D006233 ORTHO05D007247 7.0e-30 134.4 149 50.3
PGSC0003DMG400004851 Solanum tuberosum HOM05D006233 ORTHO05D007247 7.0e-30 134.4 151 53.6
PSO210G5036 Papaver somniferum HOM05D006233 ORTHO05D007247 1.2e-29 133.7 147 52.4
CDE03G0127 Ceratophyllum demersum HOM05D006233 ORTHO05D007247 2.0e-29 132.9 150 53.3
Solyc06g062760.3 Solanum lycopersicum HOM05D006233 ORTHO05D007247 2.7e-29 132.5 152 53.9
Lalb_Chr25g0280771 Lupinus albus HOM05D006233 ORTHO05D007247 3.5e-29 132.1 150 53.3
MSTRG.9502 Avicennia marina HOM05D006233 ORTHO05D007247 2.3e-28 129.4 159 49.7
Peaxi162Scf00207g01343 Petunia axillaris HOM05D006233 ORTHO05D007247 3.9e-28 128.6 152 52.6
Glyma.07G008600 Glycine max HOM05D006233 ORTHO05D007247 5.0e-28 128.3 144 57.6
FAN21G3416 Fragaria x ananassa HOM05D006233 ORTHO05D007247 6.6e-28 127.9 128 57.8
Glyma.08G191600 Glycine max HOM05D006233 ORTHO05D007247 1.5e-27 126.7 144 58.3
Duzib192G0098 Durio zibethinus HOM05D006233 ORTHO05D007247 3.3e-27 125.6 124 53.2
Lj5A42T58 Lonicera japonica HOM05D006233 ORTHO05D007247 1.6e-26 123.2 94 69.1
ECA234G2580 Erigeron canadensis HOM05D006233 ORTHO05D007247 6.2e-26 121.3 150 51.3
MBI04_g36913_MAGBIO Magnolia biondii HOM05D006233 ORTHO05D007247 2.6e-24 115.9 153 49.0
arahy.Tifrunner.gnm1.ann1.9P6A99 Arachis hypogaea HOM05D006233 ORTHO05D007247 7.5e-24 114.4 126 54.8
HanXRQChr04g0094941 Helianthus annuus HOM05D006233 ORTHO05D007247 3.7e-23 112.1 149 51.7
Actinidia32155 Actinidia chinensis HOM05D006233 ORTHO05D007247 4.9e-23 111.7 151 48.3
Rhsim08G0234900 Rhododendron simsii HOM05D006233 ORTHO05D007247 1.9e-22 109.8 131 48.9
Zm00001eb160070 Zea mays HOM05D006233 ORTHO05D007247 1.9e-22 109.8 153 45.8
Os01g0571200 Oryza sativa ssp. japonica HOM05D006233 ORTHO05D007247 1.2e-21 107.1 163 44.2
FAN11G2894 Fragaria x ananassa HOM05D000283 ORTHO05D007247 6.0e-21 104.8 148 48.6
ATR0789G010 Amborella trichopoda HOM05D006233 ORTHO05D007247 6.6e-20 101.3 74 66.2
SGA_v2.0_scaffold68G22913 Striga asiatica HOM05D006233 ORTHO05D007247 1.9e-19 99.8 126 48.4
Lsat_1_v5_gn_5_135041 Lactuca sativa HOM05D006233 ORTHO05D007247 2.8e-18 95.9 122 47.5
Nn8g38812 Nelumbo nucifera HOM05D006233 ORTHO05D007247 4.7e-18 95.1 137 42.3
unitig_8.g4463 Utricularia gibba HOM05D006233 ORTHO05D007247 2.9e-15 85.9 123 43.9
Pp3c4_29560 Physcomitrium patens HOM05D006233 ORTHO05D007247 1.2e-13 80.5 87 48.3
CSS0050466 Camellia sinensis var. sinensis HOM05D006233 ORTHO05D007247 4.6e-13 78.6 102 46.1
QL05p010144 Quercus lobata HOM05D006233 ORTHO05D007247 7.8e-13 77.8 95 47.4
CDE06G1672 Ceratophyllum demersum HOM05D006233 ORTHO05D007247 3.0e-12 75.9 120 42.5
RcHm_v2.0_Chr5g0063721 Rosa chinensis HOM05D006233 ORTHO05D007247 5.1e-12 75.1 92 50.0
QL05p010226 Quercus lobata HOM05D006233 ORTHO05D007247 8.6e-12 74.3 94 46.8
Zm00001eb357240 Zea mays HOM05D006233 ORTHO05D007247 3.3e-11 72.4 132 37.1
HPP92_007656 Vanilla planifolia HOM05D006233 ORTHO05D007247 1.6e-10 70.1 129 38.0
Mapoly0016s0011 Marchantia polymorpha HOM05D006233 ORTHO05D007247 1.1e-09 67.4 58 58.6
AagrBONN_evm.TU.Sc2ySwM_368.223 Anthoceros agrestis HOM05D003143 ORTHO05D003628 1.4e-09 67.0 52 61.5
CBR_g8600 Chara braunii HOM05D006233 ORTHO05D007247 5.2e-09 65.1 100 41.0
vmacro18776 Vaccinium macrocarpon HOM05D006233 ORTHO05D007247 7.6e-08 61.2 97 41.2
Ca_29232_v3 Cicer arietinum L. HOM05D006233 ORTHO05D007247 2.2e-07 59.7 42 71.4
SalBow7G1471 Salvia bowleyana HOM05D006233 ORTHO05D007247 2.9e-07 59.3 93 40.9
Nn1g01194 Nelumbo nucifera HOM05D006233 ORTHO05D007247 3.8e-07 58.9 46 63.0
MCO16G417 Micromonas commoda HOM05D003208 ORTHO05D004103 4.2e-06 55.5 63 49.2


User provided reference genes

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