Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s1330 Capsella rubella HOM05D007444 ORTHO05D009359 2.1e-121 439.5 306 100.0
AL3G25850 Arabidopsis lyrata HOM05D007444 ORTHO05D009359 1.7e-83 313.5 259 68.3
Thhalv10021210m.g Eutrema salsugineum HOM05D007444 ORTHO05D009359 2.2e-78 296.6 261 73.9
AT3G13780 Arabidopsis thaliana HOM05D007444 ORTHO05D009359 1.1e-77 294.3 231 74.9
CARHR088510 Cardamine hirsuta HOM05D007444 ORTHO05D009359 1.4e-77 293.9 237 78.9
Sp3g11980 Schrenkiella parvula HOM05D007444 ORTHO05D009359 7.9e-76 288.1 261 70.5
BraA05t22371Z Brassica rapa HOM05D007444 ORTHO05D009359 6.4e-70 268.5 265 69.1
C05p54050 Brassica napus HOM05D007444 ORTHO05D009359 1.2e-68 264.2 246 72.4
BolC5t34070H Brassica oleracea HOM05D007444 ORTHO05D009359 1.2e-68 264.2 246 72.4
Aa31LG8G960 Aethionema arabicum HOM05D007444 ORTHO05D009359 4.8e-65 252.3 222 64.4
BcaB06g25436 Brassica carinata HOM05D007444 ORTHO05D009359 1.8e-64 250.4 241 61.4
A05p35640 Brassica napus HOM05D007444 ORTHO05D009359 1.2e-63 247.7 178 73.0
THA.LOC104815643 Tarenaya hassleriana HOM05D007444 ORTHO05D009359 1.4e-61 240.7 267 52.8
Gohir.D06G198800 Gossypium hirsutum HOM05D007444 ORTHO05D009359 1.1e-50 204.5 235 58.7
FAN14G4700 Fragaria x ananassa HOM05D007444 ORTHO05D009359 1.5e-50 204.1 243 53.1
Duzib235G0092 Durio zibethinus HOM05D007444 ORTHO05D009359 2.5e-50 203.4 238 47.1
RcHm_v2.0_Chr2g0143591 Rosa chinensis HOM05D007444 ORTHO05D009359 5.7e-50 202.2 243 54.3
FvH4_6g33680 Fragaria vesca HOM05D007444 ORTHO05D009359 2.2e-49 200.3 243 52.7
Gorai.010G231700 Gossypium raimondii HOM05D007444 ORTHO05D009359 8.2e-49 198.4 235 57.9
FAN09G3948 Fragaria x ananassa HOM05D007444 ORTHO05D009359 3.1e-48 196.4 243 51.4
QL05p011272 Quercus lobata HOM05D007444 ORTHO05D009359 1.2e-47 194.5 248 48.0
Gohir.A06G190400 Gossypium hirsutum HOM05D007444 ORTHO05D009359 1.5e-47 194.1 176 55.1
Lj9A520T86 Lonicera japonica HOM05D007444 ORTHO05D009359 2.2e-46 190.3 247 43.7
COL.COLO4_30661 Corchorus olitorius HOM05D007444 ORTHO05D009359 5.0e-46 189.1 182 50.0
Cc04_g01830 Coffea canephora HOM05D007444 ORTHO05D009359 8.5e-46 188.3 244 43.4
QL05p011652 Quercus lobata HOM05D007444 ORTHO05D009359 1.9e-45 187.2 249 49.4
Ah.08g216430 Amaranthus hybridus HOM05D007444 ORTHO05D009359 7.2e-45 185.3 259 45.9
CiPaw.02G139200 Carya illinoinensis HOM05D007444 ORTHO05D009359 7.2e-45 185.3 247 43.3
Haze_15975 Corylus avellana HOM05D007444 ORTHO05D009359 9.4e-45 184.9 245 52.7
Hund20831 Selenicereus undatus HOM05D007444 ORTHO05D009359 9.4e-45 184.9 261 43.3
Ca_01210_v3 Cicer arietinum L. HOM05D007444 ORTHO05D009359 2.1e-44 183.7 233 41.6
Nitab4.5_0000255g0240 Nicotiana tabacum HOM05D007444 ORTHO05D009359 3.6e-44 183.0 255 44.7
Nitab4.5_0005918g0020 Nicotiana tabacum HOM05D007444 ORTHO05D009359 4.7e-44 182.6 254 46.5
Prupe.3G047900 Prunus persica HOM05D007444 ORTHO05D009359 4.7e-44 182.6 261 45.2
Manes.11G025100 Manihot esculenta HOM05D007444 ORTHO05D009359 7.9e-44 181.8 247 49.4
Phvul.005G158200 Phaseolus vulgaris HOM05D007444 ORTHO05D009359 7.9e-44 181.8 233 43.3
CSS0030092 Camellia sinensis var. sinensis HOM05D007444 ORTHO05D009359 1.0e-43 181.4 251 43.8
TWI36G0277 Tripterygium wilfordii HOM05D007444 ORTHO05D009359 1.0e-43 181.4 242 49.2
TWI36G1725 Tripterygium wilfordii HOM05D007444 ORTHO05D009359 1.0e-43 181.4 242 49.2
Medtr2g099820 Medicago truncatula HOM05D007444 ORTHO05D009359 1.8e-43 180.6 233 42.1
Ciclev10026127m.g Citrus clementina HOM05D007444 ORTHO05D009359 3.0e-43 179.9 246 49.2
Sc12g0010310 Simmondsia chinensis HOM05D007444 ORTHO05D009359 3.9e-43 179.5 242 43.0
Psat5g292040 Pisum sativum HOM05D007444 ORTHO05D009359 1.5e-42 177.6 233 44.2
Eucgr.F03140 Eucalyptus grandis HOM05D007444 ORTHO05D009359 2.0e-42 177.2 245 40.8
PGSC0003DMG400004847 Solanum tuberosum HOM05D007444 ORTHO05D009359 2.6e-42 176.8 250 51.2
GSVIVG01016873001 Vitis vinifera HOM05D007444 ORTHO05D009359 3.3e-42 176.4 233 49.8
PGR119G0376 Punica granatum HOM05D007444 ORTHO05D009359 4.4e-42 176.0 178 47.8
Sopen06g022180 Solanum pennellii HOM05D007444 ORTHO05D009359 2.2e-41 173.7 250 49.6
Actinidia09035 Actinidia chinensis HOM05D007444 ORTHO05D009359 4.8e-41 172.6 254 39.8
Cfa003571 Carpinus fangiana HOM05D007444 ORTHO05D009359 4.8e-41 172.6 180 48.3
Glyma.15G024900 Glycine max HOM05D007444 ORTHO05D009359 4.8e-41 172.6 233 42.1
TPR.G6573 Trifolium pratense HOM05D007444 ORTHO05D009359 1.1e-40 171.4 234 41.5
EL10Ac7g16359 Beta vulgaris HOM05D007444 ORTHO05D009359 1.8e-40 170.6 258 47.3
Sed0011511 Sechium edule HOM05D007444 ORTHO05D009359 4.1e-40 169.5 241 39.8
MD09G1191700 Malus domestica HOM05D007444 ORTHO05D009359 5.3e-40 169.1 243 40.3
QL05p010974 Quercus lobata HOM05D007444 ORTHO05D009359 9.1e-40 168.3 185 49.2
Peaxi162Scf00207g00133 Petunia axillaris HOM05D007444 ORTHO05D009359 2.6e-39 166.8 199 44.2
Aqoxy7G01186 Aquilegia oxysepala HOM05D007444 ORTHO05D009359 7.7e-39 165.2 199 44.2
Lalb_Chr14g0372751 Lupinus albus HOM05D007444 ORTHO05D009359 7.7e-39 165.2 240 40.4
Lsat_1_v5_gn_1_35640 Lactuca sativa HOM05D007444 ORTHO05D009359 2.9e-38 163.3 252 47.6
Oeu039953.1 Olea europaea HOM05D007444 ORTHO05D009359 3.8e-38 162.9 259 45.9
AUR62009843 Chenopodium quinoa HOM05D007444 ORTHO05D009359 5.0e-38 162.5 274 36.9
Potri.001G196700 Populus trichocarpa HOM05D007444 ORTHO05D009359 5.0e-38 162.5 241 41.9
AUR62038156 Chenopodium quinoa HOM05D007444 ORTHO05D009359 8.5e-38 161.8 191 46.6
Lj3g0023369 Lotus japonicus HOM05D007444 ORTHO05D009359 8.5e-38 161.8 234 45.3
Sabra01G0143200 Salix brachista HOM05D007444 ORTHO05D009359 8.5e-38 161.8 185 45.9
vmacro17027 Vaccinium macrocarpon HOM05D007444 ORTHO05D009359 8.5e-38 161.8 253 39.5
DCAR_022704 Daucus carota HOM05D007444 ORTHO05D009359 1.9e-37 160.6 246 50.0
CANSAT56G0761 Cannabis sativa HOM05D007444 ORTHO05D009359 3.2e-37 159.8 189 46.6
arahy.Tifrunner.gnm1.ann1.F397YD Arachis hypogaea HOM05D007444 ORTHO05D009359 3.6e-36 156.4 244 51.6
PSO478G1587 Papaver somniferum HOM05D007444 ORTHO05D009359 6.1e-36 155.6 260 41.2
arahy.Tifrunner.gnm1.ann1.ZV36U3 Arachis hypogaea HOM05D007444 ORTHO05D009359 8.0e-36 155.2 244 51.6
CAN.G825.32 Capsicum annuum HOM05D007444 ORTHO05D009359 8.0e-36 155.2 255 47.1
Migut.D00964 Erythranthe guttata HOM05D007444 ORTHO05D009359 3.0e-35 153.3 249 42.6
PSO017G2704 Papaver somniferum HOM05D007444 ORTHO05D009359 8.8e-35 151.8 260 38.5
MSTRG.4771 Avicennia marina HOM05D007444 ORTHO05D009359 3.3e-34 149.8 254 41.3
TAR383G0129 Trochodendron aralioides HOM05D007444 ORTHO05D009359 4.4e-34 149.4 271 33.9
MELO3C013088.2 Cucumis melo HOM05D007444 ORTHO05D009359 7.4e-34 148.7 233 46.8
SGA_v2.0_scaffold68G22914 Striga asiatica HOM05D007444 ORTHO05D009359 9.7e-34 148.3 252 43.7
CsaV3_3G043760 Cucumis sativus L. HOM05D007444 ORTHO05D009359 1.7e-33 147.5 233 36.1
SalBow7G2527 Salvia bowleyana HOM05D007444 ORTHO05D009359 2.8e-33 146.7 251 45.0
HanXRQChr02g0031731 Helianthus annuus HOM05D007444 ORTHO05D009359 2.2e-30 137.1 242 45.0
MBI01_g20340_MAGBIO Magnolia biondii HOM05D007444 ORTHO05D009359 3.2e-29 133.3 295 31.5
ClCG07G013830 Citrullus lanatus HOM05D007444 ORTHO05D009359 4.2e-29 132.9 251 34.3
Dinv37906 Davidia involucrata HOM05D007444 ORTHO05D009359 4.2e-29 132.9 164 47.0
Cpa.g.sc25.50 Carica papaya HOM05D007444 ORTHO05D009359 2.3e-27 127.1 170 41.8
Rhsim12G0206600 Rhododendron simsii HOM05D007444 ORTHO05D009359 4.4e-26 122.9 158 46.8
Solyc06g062700.3 Solanum lycopersicum HOM05D007444 ORTHO05D009359 3.7e-25 119.8 156 42.3
CDE05G3416 Ceratophyllum demersum HOM05D007444 ORTHO05D009359 3.5e-23 113.2 209 37.3
HPP92_005228 Vanilla planifolia HOM05D007444 ORTHO05D009359 7.2e-21 105.5 279 29.7
Zm00001eb277400 Zea mays HOM05D007444 ORTHO05D009359 1.7e-17 94.4 205 33.7
SEGI_13370 Sequoiadendron giganteum HOM05D007444 ORTHO05D009359 1.8e-16 90.9 247 30.0
ECA247G2926 Erigeron canadensis HOM05D000045 ORTHO05D000067 1.2e-15 88.2 156 51.9
Hma1.2p1_0496F.1_g165930 Hydrangea macrophylla HOM05D007444 ORTHO05D009359 6.6e-14 82.4 102 43.1
ATR0109G024 Amborella trichopoda HOM05D007444 ORTHO05D009359 1.0e-11 75.1 135 34.1
BcaC02g12249 Brassica carinata HOM05D007444 ORTHO05D009359 7.5e-10 68.9 39 74.4


User provided reference genes

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