Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s1274 Capsella rubella HOM05D003079 ORTHO05D003461 3.9e-244 847.8 469 100.0
AL3G25210 Arabidopsis lyrata HOM05D003079 ORTHO05D003461 9.0e-172 607.4 475 72.2
Sp3g11560 Schrenkiella parvula HOM05D003079 ORTHO05D003461 3.7e-165 585.5 495 68.3
AT3G13360 Arabidopsis thaliana HOM05D003079 ORTHO05D003461 5.3e-156 555.1 474 67.3
CARHR087980 Cardamine hirsuta HOM05D003079 ORTHO05D003461 2.5e-142 509.6 477 64.6
Thhalv10020643m.g Eutrema salsugineum HOM05D003079 ORTHO05D003461 2.8e-141 506.1 499 62.1
BcaC01g03997 Brassica carinata HOM05D003079 ORTHO05D003461 2.7e-120 436.4 479 56.8
Aa31LG8G580 Aethionema arabicum HOM05D003079 ORTHO05D003461 6.1e-120 435.3 487 54.6
C03p46320 Brassica napus HOM05D003079 ORTHO05D003461 1.4e-119 434.1 481 57.0
BolC3t16901H Brassica oleracea HOM05D003079 ORTHO05D003461 2.2e-117 426.8 479 56.8
A03p38160 Brassica napus HOM05D003079 ORTHO05D003461 2.5e-113 413.3 476 54.8
BraA03t12969Z Brassica rapa HOM05D003079 ORTHO05D003461 2.5e-113 413.3 476 54.8
BcaB04g21010 Brassica carinata HOM05D003079 ORTHO05D003461 2.6e-110 403.3 463 57.7
C01p51720 Brassica napus HOM05D003079 ORTHO05D003461 1.8e-108 397.1 443 59.1
BcaB04g18754 Brassica carinata HOM05D003079 ORTHO05D003461 9.1e-108 394.8 447 55.3
A01p40240 Brassica napus HOM05D003079 ORTHO05D003461 4.5e-107 392.5 458 56.6
BolC1t05117H Brassica oleracea HOM05D003079 ORTHO05D003461 4.5e-107 392.5 443 58.2
BraA01t04061Z Brassica rapa HOM05D003079 ORTHO05D003461 4.5e-107 392.5 458 56.6
BcaC09g48303 Brassica carinata HOM05D003079 ORTHO05D003461 1.3e-106 391.0 443 58.2
THA.LOC104815679 Tarenaya hassleriana HOM05D003079 ORTHO05D003461 1.9e-73 280.8 486 44.0
THA.LOC104810573 Tarenaya hassleriana HOM05D003079 ORTHO05D003461 3.3e-57 226.9 446 40.8
Gohir.A13G128400 Gossypium hirsutum HOM05D003079 ORTHO05D003461 1.8e-34 151.4 554 31.0
Ciclev10007777m.g Citrus clementina HOM05D003079 ORTHO05D003461 6.7e-34 149.4 615 28.3
Gorai.013G147800 Gossypium raimondii HOM05D003079 ORTHO05D003461 3.3e-33 147.1 554 32.3
Gohir.D13G131800 Gossypium hirsutum HOM05D003079 ORTHO05D003461 5.7e-33 146.4 554 31.6
TWI39G1230 Tripterygium wilfordii HOM05D003079 ORTHO05D003461 7.4e-33 146.0 579 29.4
Thecc.07G001500 Theobroma cacao HOM05D003079 ORTHO05D003461 1.6e-32 144.8 593 28.3
Duzib268G0697 Durio zibethinus HOM05D003079 ORTHO05D003461 2.2e-32 144.4 557 30.0
Potri.001G472000 Populus trichocarpa HOM05D003079 ORTHO05D003461 2.2e-32 144.4 586 30.5
TWI14G0136 Tripterygium wilfordii HOM05D003079 ORTHO05D003461 1.1e-31 142.1 571 29.8
Duzib170G0955 Durio zibethinus HOM05D003079 ORTHO05D003461 1.4e-31 141.7 592 29.6
Cpa.g.sc12.64 Carica papaya HOM05D003079 ORTHO05D003461 1.8e-31 141.4 446 31.8
Sabra11G0137800 Salix brachista HOM05D003079 ORTHO05D003461 2.4e-31 141.0 600 30.3
TWI38G1795 Tripterygium wilfordii HOM05D003079 ORTHO05D003461 1.5e-30 138.3 535 29.5
Potri.011G169000 Populus trichocarpa HOM05D003079 ORTHO05D003461 2.0e-30 137.9 591 29.9
AT5G56210 Arabidopsis thaliana HOM05D003079 ORTHO05D003461 2.6e-30 137.5 404 33.7
Manes.05G204700 Manihot esculenta HOM05D003079 ORTHO05D003461 1.3e-29 135.2 590 29.3
QL08p000493 Quercus lobata HOM05D003079 ORTHO05D003461 5.0e-29 133.3 611 27.0
Eucgr.F03644 Eucalyptus grandis HOM05D003079 ORTHO05D003461 1.1e-28 132.1 571 28.5
AL8G31840 Arabidopsis lyrata HOM05D003079 ORTHO05D003461 1.4e-28 131.7 466 30.7
Atru.chr2.3897 Acer truncatum HOM05D003079 ORTHO05D003461 3.2e-28 130.6 503 31.2
Lj1A901G36 Lonicera japonica HOM05D003079 ORTHO05D003461 7.2e-28 129.4 525 29.7
Duzib213G0264 Durio zibethinus HOM05D003079 ORTHO05D003461 9.4e-28 129.0 593 32.9
Haze_09917 Corylus avellana HOM05D003079 ORTHO05D003461 2.7e-27 127.5 503 30.4
GSVIVG01014846001 Vitis vinifera HOM05D003079 ORTHO05D003461 3.6e-27 127.1 493 31.2
Gohir.A11G276200 Gossypium hirsutum HOM05D003079 ORTHO05D003461 4.6e-27 126.7 456 30.9
Prupe.6G035500 Prunus persica HOM05D003079 ORTHO05D003461 1.0e-26 125.6 506 33.8
MELO3C014061.2 Cucumis melo HOM05D003079 ORTHO05D003461 2.3e-26 124.4 531 27.7
ClCG00G001200 Citrullus lanatus HOM05D003079 ORTHO05D003461 6.7e-26 122.9 534 26.8
ClCG10G003820 Citrullus lanatus HOM05D003079 ORTHO05D003461 6.7e-26 122.9 534 26.8
ClCG10G003930 Citrullus lanatus HOM05D003079 ORTHO05D003461 6.7e-26 122.9 534 26.8
MD11G1046100 Malus domestica HOM05D003079 ORTHO05D003461 1.1e-25 122.1 405 32.6
Nitab4.5_0009408g0020 Nicotiana tabacum HOM05D003079 ORTHO05D003461 1.1e-25 122.1 498 29.1
Sed0022199 Sechium edule HOM05D003079 ORTHO05D003461 1.5e-25 121.7 319 32.6
COL.COLO4_07791 Corchorus olitorius HOM05D003079 ORTHO05D003461 3.3e-25 120.6 349 33.0
Dinv19642 Davidia involucrata HOM05D003079 ORTHO05D003461 3.3e-25 120.6 370 36.2
CSS0035812 Camellia sinensis var. sinensis HOM05D003079 ORTHO05D003461 4.3e-25 120.2 504 30.0
CSS0022300 Camellia sinensis var. sinensis HOM05D003079 ORTHO05D003461 7.4e-25 119.4 504 30.0
Gohir.D11G286600 Gossypium hirsutum HOM05D003079 ORTHO05D003461 1.7e-24 118.2 495 28.5
Carub.0007s1447 Capsella rubella HOM05D003079 ORTHO05D003461 3.7e-24 117.1 525 28.4
Gorai.007G310000 Gossypium raimondii HOM05D003079 ORTHO05D003461 4.8e-24 116.7 495 28.5
Dinv40917 Davidia involucrata HOM05D003079 ORTHO05D003461 6.3e-24 116.3 387 34.9
CSS0018146 Camellia sinensis var. sinensis HOM05D003079 ORTHO05D003461 8.2e-24 115.9 514 29.2
PGR083G0768 Punica granatum HOM05D003079 ORTHO05D003461 1.1e-23 115.5 526 26.4
CANSAT11G2157 Cannabis sativa HOM05D003079 ORTHO05D003461 1.8e-23 114.8 550 28.2
CsaV3_3G003800 Cucumis sativus L. HOM05D003079 ORTHO05D003461 3.1e-23 114.0 431 29.9
MD03G1043100 Malus domestica HOM05D003079 ORTHO05D003461 4.1e-23 113.6 545 29.7
Aa31LG3G12120 Aethionema arabicum HOM05D003079 ORTHO05D003461 5.3e-23 113.2 442 31.2
Medtr3g009740 Medicago truncatula HOM05D003079 ORTHO05D003461 3.4e-22 110.5 534 25.8
Hma1.2p1_0193F.1_g084340 Hydrangea macrophylla HOM05D003079 ORTHO05D003461 5.9e-22 109.8 339 33.3
Nitab4.5_0000152g0030 Nicotiana tabacum HOM05D003079 ORTHO05D003461 5.9e-22 109.8 510 28.2
CAN.G623.75 Capsicum annuum HOM05D003079 ORTHO05D003461 1.3e-21 108.6 603 26.7
Carub.0008s1653 Capsella rubella HOM05D003079 ORTHO05D003461 1.7e-21 108.2 486 30.5
PGSC0003DMG400022146 Solanum tuberosum HOM05D003079 ORTHO05D003461 1.7e-21 108.2 499 29.9
TAR626G0479 Trochodendron aralioides HOM05D003079 ORTHO05D003461 2.2e-21 107.8 323 35.3
Sopen07g034350 Solanum pennellii HOM05D003079 ORTHO05D003461 2.9e-21 107.5 580 29.8
CARHR234020 Cardamine hirsuta HOM05D003079 ORTHO05D003461 3.8e-21 107.1 525 26.7
CiPaw.12G142700 Carya illinoinensis HOM05D003079 ORTHO05D003461 5.0e-21 106.7 471 28.2
Sed0005838 Sechium edule HOM05D003079 ORTHO05D003461 5.0e-21 106.7 482 27.0
TAR611G0001 Trochodendron aralioides HOM05D003079 ORTHO05D003461 6.5e-21 106.3 318 35.2
CiPaw.12G142800 Carya illinoinensis HOM05D003079 ORTHO05D003461 8.5e-21 105.9 522 27.2
Peaxi162Scf00232g00614 Petunia axillaris HOM05D003079 ORTHO05D003461 1.4e-20 105.1 474 28.5
Phvul.L001609 Phaseolus vulgaris HOM05D003079 ORTHO05D003461 1.4e-20 105.1 594 28.3
BolC1t02168H Brassica oleracea HOM05D003079 ORTHO05D003461 1.9e-20 104.8 357 30.8
MSTRG.13045 Avicennia marina HOM05D003079 ORTHO05D003461 2.5e-20 104.4 579 26.6
BcaC09g50710 Brassica carinata HOM05D003079 ORTHO05D003461 5.5e-20 103.2 357 30.5
Cc05_g15720 Coffea canephora HOM05D003079 ORTHO05D003461 5.5e-20 103.2 601 27.6
FAN16G0740 Fragaria x ananassa HOM05D003079 ORTHO05D003461 1.6e-19 101.7 597 26.5
Nitab4.5_0000611g0170 Nicotiana tabacum HOM05D003079 ORTHO05D003461 2.1e-19 101.3 484 29.1
RcHm_v2.0_Chr5g0074601 Rosa chinensis HOM05D003079 ORTHO05D003461 2.1e-19 101.3 594 26.8
Thhalv10024990m.g Eutrema salsugineum HOM05D003079 ORTHO05D003461 2.7e-19 100.9 474 27.0
Rhsim04G0008000 Rhododendron simsii HOM05D003079 ORTHO05D003461 6.1e-19 99.8 307 32.6
vmacro09798 Vaccinium macrocarpon HOM05D003079 ORTHO05D003461 6.1e-19 99.8 326 32.2
Thhalv10013313m.g Eutrema salsugineum HOM05D003079 ORTHO05D003461 7.9e-19 99.4 451 29.3
MBI15_g44396_MAGBIO Magnolia biondii HOM05D003079 ORTHO05D003461 1.0e-18 99.0 518 28.8
Migut.H01709 Erythranthe guttata HOM05D003079 ORTHO05D003461 1.4e-18 98.6 521 26.7
Nitab4.5_0001622g0150 Nicotiana tabacum HOM05D003079 ORTHO05D003461 1.4e-18 98.6 434 30.0
THA.LOC104811703 Tarenaya hassleriana HOM05D003079 ORTHO05D003461 1.4e-18 98.6 424 28.3
FAN21G1152 Fragaria x ananassa HOM05D003079 ORTHO05D003461 2.3e-18 97.8 433 29.6
Rhsim06G0235200 Rhododendron simsii HOM05D003079 ORTHO05D003461 2.3e-18 97.8 361 32.1
TPR.G16690 Trifolium pratense HOM05D003079 ORTHO05D003461 2.3e-18 97.8 508 26.4
BcaNung02417 Brassica carinata HOM05D003079 ORTHO05D003461 3.0e-18 97.4 509 28.7
Glyma.04G113700 Glycine max HOM05D003079 ORTHO05D003461 6.7e-18 96.3 597 27.0
Sp6g18060 Schrenkiella parvula HOM05D003079 ORTHO05D003461 6.7e-18 96.3 460 27.6
Sopen10g001680 Solanum pennellii HOM05D003079 ORTHO05D003461 6.7e-18 96.3 501 28.5
CAN.G492.58 Capsicum annuum HOM05D003079 ORTHO05D003461 8.8e-18 95.9 504 28.4
SalBow8G1693 Salvia bowleyana HOM05D003079 ORTHO05D003461 1.1e-17 95.5 453 26.9
FvH4_3g41590 Fragaria vesca HOM05D003079 ORTHO05D003461 1.5e-17 95.1 610 25.9
PGSC0003DMG400008693 Solanum tuberosum HOM05D003079 ORTHO05D003461 1.5e-17 95.1 499 27.7
Psat5g231200 Pisum sativum HOM05D003079 ORTHO05D003461 2.0e-17 94.7 581 27.4
FAN11G0995 Fragaria x ananassa HOM05D003079 ORTHO05D003461 2.6e-17 94.4 610 25.9
Glyma.06G321400 Glycine max HOM05D003079 ORTHO05D003461 4.4e-17 93.6 600 26.3
Actinidia30350 Actinidia chinensis HOM05D003079 ORTHO05D003461 5.7e-17 93.2 357 31.1
Lj3g0020124 Lotus japonicus HOM05D003079 ORTHO05D003461 5.7e-17 93.2 588 26.4
Lalb_Chr15g0079931 Lupinus albus HOM05D003079 ORTHO05D003461 7.4e-17 92.8 574 26.5
TAR627G0159 Trochodendron aralioides HOM05D003079 ORTHO05D003461 7.4e-17 92.8 459 29.4
Sc03g0011780 Simmondsia chinensis HOM05D003079 ORTHO05D003461 9.7e-17 92.4 531 26.9
DCAR_013756 Daucus carota HOM05D003079 ORTHO05D003461 1.3e-16 92.0 483 29.0
Actinidia31529 Actinidia chinensis HOM05D003079 ORTHO05D003461 2.2e-16 91.3 510 27.1
AL7G26490 Arabidopsis lyrata HOM05D003079 ORTHO05D003461 2.8e-16 90.9 525 26.1
A01p17700 Brassica napus HOM05D003079 ORTHO05D003461 4.8e-16 90.1 353 28.3
Migut.M01581 Erythranthe guttata HOM05D003079 ORTHO05D003461 6.3e-16 89.7 354 30.2
BraA01t01726Z Brassica rapa HOM05D003079 ORTHO05D003461 8.2e-16 89.4 351 28.2
Nn1g07629 Nelumbo nucifera HOM05D003079 ORTHO05D003461 1.4e-15 88.6 444 28.8
Oeu052026.1 Olea europaea HOM05D003079 ORTHO05D003461 2.4e-15 87.8 433 27.3
arahy.Tifrunner.gnm1.ann1.FC0SK2 Arachis hypogaea HOM05D003079 ORTHO05D003461 3.1e-15 87.4 589 27.2
C01p22370 Brassica napus HOM05D003079 ORTHO05D003461 4.1e-15 87.0 362 29.3
SGA_v2.0_scaffold92G28159 Striga asiatica HOM05D003079 ORTHO05D003461 5.3e-15 86.7 520 25.8
AT4G26455 Arabidopsis thaliana HOM05D003079 ORTHO05D003461 9.1e-15 85.9 525 25.7
PSO782G1655 Papaver somniferum HOM05D003079 ORTHO05D003461 1.2e-14 85.5 440 27.0
PSO063G6668 Papaver somniferum HOM05D003079 ORTHO05D003461 3.5e-14 84.0 429 26.8
arahy.Tifrunner.gnm1.ann1.WAW8B8 Arachis hypogaea HOM05D003079 ORTHO05D003461 1.0e-13 82.4 370 30.3
vmacro11641 Vaccinium macrocarpon HOM05D003079 ORTHO05D003461 1.7e-13 81.6 441 26.3
Sp7g24370 Schrenkiella parvula HOM05D003079 ORTHO05D003461 2.2e-13 81.3 536 25.2
Oeu005543.1 Olea europaea HOM05D003079 ORTHO05D003461 1.5e-12 78.6 513 25.1
VMungo1080G0483 Vigna mungo HOM05D003079 ORTHO05D003461 1.9e-12 78.2 573 26.7
DCAR_017612 Daucus carota HOM05D003079 ORTHO05D003461 1.2e-11 75.5 587 27.6
MSTRG.16132 Avicennia marina HOM05D003079 ORTHO05D003461 1.8e-10 71.6 576 24.1
Lj8C183T12 Lonicera japonica HOM05D003079 ORTHO05D003461 5.2e-10 70.1 285 28.8
FAN25G3298 Fragaria x ananassa HOM05D003079 ORTHO05D003461 8.8e-10 69.3 618 25.1
Oeu062673.1 Olea europaea HOM05D003079 ORTHO05D003461 3.3e-09 67.4 270 29.6
Lsat_1_v5_gn_7_115521 Lactuca sativa HOM05D003079 ORTHO05D003461 1.7e-08 65.1 393 25.7
Hund22967 Selenicereus undatus HOM05D003079 ORTHO05D003461 1.8e-07 61.6 338 27.2
BraA05t22422Z Brassica rapa HOM05D033162 ORTHO05D041063 3.1e-07 60.8 167 35.9
ECA236G4881 Erigeron canadensis HOM05D003079 ORTHO05D003461 5.3e-07 60.1 438 24.0
A05p36180 Brassica napus HOM05D033162 ORTHO05D041063 1.2e-06 58.9 167 35.3
HanXRQChr11g0335521 Helianthus annuus HOM05D003079 ORTHO05D003461 4.5e-06 57.0 464 23.3


User provided reference genes

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