Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s1247 Capsella rubella HOM05D010616 ORTHO05D003654 2.2e-96 355.9 218 100.0
AT3G13130 Arabidopsis thaliana HOM05D010616 ORTHO05D003654 3.5e-54 215.7 218 64.7
CARHR087720 Cardamine hirsuta HOM05D010616 ORTHO05D003654 3.5e-46 189.1 219 59.4
Sp3g11300 Schrenkiella parvula HOM05D010616 ORTHO05D003654 6.0e-46 188.3 218 58.3
Thhalv10021559m.g Eutrema salsugineum HOM05D010616 ORTHO05D003654 1.3e-45 187.2 218 56.9
BcaC05g29208 Brassica carinata HOM05D010616 ORTHO05D003654 1.8e-42 176.8 218 55.0
C05p54810 Brassica napus HOM05D010616 ORTHO05D003654 1.8e-42 176.8 218 55.0
BolC5t34153H Brassica oleracea HOM05D010616 ORTHO05D003654 1.8e-42 176.8 218 55.0
BcaNung05271 Brassica carinata HOM05D010616 ORTHO05D003654 6.9e-42 174.9 223 59.6
BraA05t22441Z Brassica rapa HOM05D010616 ORTHO05D003654 2.0e-41 173.3 218 52.8
A05p36410 Brassica napus HOM05D010616 ORTHO05D003654 2.6e-41 172.9 218 53.7
BraA03t12959Z Brassica rapa HOM05D010616 ORTHO05D003654 5.0e-40 168.7 218 57.3
BolC3t16890H Brassica oleracea HOM05D010616 ORTHO05D003654 5.5e-39 165.2 236 52.5
BcaB06g25485 Brassica carinata HOM05D010616 ORTHO05D003654 2.7e-38 162.9 219 53.9
A03p38060 Brassica napus HOM05D010616 ORTHO05D003654 3.6e-38 162.5 237 51.9
BcaC01g04015 Brassica carinata HOM05D010616 ORTHO05D003654 8.7e-37 157.9 236 50.8
C03p46190 Brassica napus HOM05D010616 ORTHO05D003654 8.7e-37 157.9 236 50.8
AL3G24870 Arabidopsis lyrata HOM05D010616 ORTHO05D003654 1.0e-29 134.4 171 63.7
THA.LOC104810289 Tarenaya hassleriana HOM05D010616 ORTHO05D003654 9.4e-23 111.3 229 37.1
THA.LOC104822734 Tarenaya hassleriana HOM05D010616 ORTHO05D003654 3.8e-16 89.4 220 40.9
Gorai.009G449600 Gossypium raimondii HOM05D005871 ORTHO05D003654 1.5e-12 77.4 243 37.9
Prupe.4G241600 Prunus persica HOM05D005871 ORTHO05D003654 2.0e-12 77.0 235 34.9
Gohir.A04G006400 Gossypium hirsutum HOM05D005871 ORTHO05D003654 5.7e-12 75.5 233 36.9
Gohir.D05G383000 Gossypium hirsutum HOM05D005871 ORTHO05D003654 7.5e-12 75.1 229 34.9
Gorai.009G449400 Gossypium raimondii HOM05D005871 ORTHO05D003654 9.7e-12 74.7 232 37.1
TWI38G0819 Tripterygium wilfordii HOM05D005871 ORTHO05D003654 1.3e-11 74.3 241 35.3
Lj6g0021132 Lotus japonicus HOM05D005871 ORTHO05D003654 1.7e-11 73.9 201 30.8
COL.COLO4_09813 Corchorus olitorius HOM05D005871 ORTHO05D003654 2.2e-11 73.6 257 33.9
Thecc.07G015800 Theobroma cacao HOM05D005871 ORTHO05D003654 2.2e-11 73.6 262 30.2
Gohir.D05G383100 Gossypium hirsutum HOM05D005871 ORTHO05D003654 2.8e-11 73.2 232 37.9
TWI39G0465 Tripterygium wilfordii HOM05D005871 ORTHO05D003654 2.8e-11 73.2 248 33.5
Gohir.D05G382900 Gossypium hirsutum HOM05D005871 ORTHO05D003654 6.3e-11 72.0 231 36.8
Phvul.006G056300 Phaseolus vulgaris HOM05D005871 ORTHO05D003654 6.3e-11 72.0 224 30.4
Glyma.18G078200 Glycine max HOM05D005871 ORTHO05D003654 2.4e-10 70.1 218 31.2
MD03G1184900 Malus domestica HOM05D005871 ORTHO05D003654 2.4e-10 70.1 233 34.3
Gorai.004G033400 Gossypium raimondii HOM05D005871 ORTHO05D003654 3.1e-10 69.7 241 32.0
Cpa.g.sc12.163 Carica papaya HOM05D005871 ORTHO05D003654 4.1e-10 69.3 238 34.0
CiPaw.12G137100 Carya illinoinensis HOM05D005871 ORTHO05D003654 7.0e-10 68.6 227 34.4
Gohir.D08G035400 Gossypium hirsutum HOM05D005871 ORTHO05D003654 7.0e-10 68.6 242 30.2
Glyma.08G328600 Glycine max HOM05D005871 ORTHO05D003654 2.7e-09 66.6 227 28.6
Manes.03G140301 Manihot esculenta HOM05D005871 ORTHO05D003654 2.7e-09 66.6 253 36.4
Duzib170G1062 Durio zibethinus HOM05D005871 ORTHO05D003654 7.7e-09 65.1 231 35.5
Eucgr.F02056 Eucalyptus grandis HOM05D005871 ORTHO05D003654 1.0e-08 64.7 250 34.0
Duzib133G1309 Durio zibethinus HOM05D008806 ORTHO05D003654 1.3e-08 64.3 209 32.5
Manes.15G061300 Manihot esculenta HOM05D005871 ORTHO05D003654 1.7e-08 63.9 218 29.4
VMungo0647G1579 Vigna mungo HOM05D005871 ORTHO05D003654 2.2e-08 63.5 209 29.7
Ah.06g181330 Amaranthus hybridus HOM05D005871 ORTHO05D003654 2.9e-08 63.2 191 38.2
VMungo0540G0718 Vigna mungo HOM05D005871 ORTHO05D003654 2.9e-08 63.2 222 33.8
Hma1.2p1_0657F.1_g196840 Hydrangea macrophylla HOM05D005871 ORTHO05D003654 3.8e-08 62.8 235 31.9
Gohir.A08G024900 Gossypium hirsutum HOM05D005871 ORTHO05D003654 5.0e-08 62.4 242 28.9
QL08p004709 Quercus lobata HOM05D005871 ORTHO05D003654 5.0e-08 62.4 231 39.0
Sabra16G0239800 Salix brachista HOM05D005871 ORTHO05D003654 5.0e-08 62.4 255 28.6
TPR.G35473 Trifolium pratense HOM05D005871 ORTHO05D003654 5.0e-08 62.4 203 30.5
Manes.03G140300 Manihot esculenta HOM05D005871 ORTHO05D003654 8.5e-08 61.6 257 30.7
Medtr2g026565 Medicago truncatula HOM05D005871 ORTHO05D003654 1.1e-07 61.2 242 28.5
Nn1g03208 Nelumbo nucifera HOM05D005871 ORTHO05D003654 1.1e-07 61.2 219 31.5
Gorai.009G449500 Gossypium raimondii HOM05D005871 ORTHO05D003654 1.5e-07 60.8 211 29.9
Potri.001G366500 Populus trichocarpa HOM05D005871 ORTHO05D003654 1.5e-07 60.8 263 29.3
Gohir.D05G382950 Gossypium hirsutum HOM05D005871 ORTHO05D003654 1.9e-07 60.5 211 29.9
Haze_09808 Corylus avellana HOM05D005871 ORTHO05D003654 2.5e-07 60.1 228 29.8
Cfa020208 Carpinus fangiana HOM05D005871 ORTHO05D003654 3.2e-07 59.7 231 32.9
CiPaw.09G107300 Carya illinoinensis HOM05D005871 ORTHO05D003654 3.2e-07 59.7 227 28.6
Psat1g173400 Pisum sativum HOM05D005871 ORTHO05D003654 5.5e-07 58.9 192 29.2
AUR62017078 Chenopodium quinoa HOM05D005871 ORTHO05D003654 9.4e-07 58.2 184 38.6
Glyma.14G014200 Glycine max HOM05D005871 ORTHO05D003654 9.4e-07 58.2 237 31.2
FAN09G0572 Fragaria x ananassa HOM05D008806 ORTHO05D003654 1.2e-06 57.8 183 28.4
TPR.G10004 Trifolium pratense HOM05D005871 ORTHO05D003654 1.2e-06 57.8 235 27.7
TAR626G0615 Trochodendron aralioides HOM05D005871 ORTHO05D003654 1.2e-06 57.8 241 28.2
VMungo0540G2170 Vigna mungo HOM05D005871 ORTHO05D003654 1.2e-06 57.8 221 35.3
Phvul.006G140600 Phaseolus vulgaris HOM05D005871 ORTHO05D003654 2.1e-06 57.0 232 26.7
FAN02G3820 Fragaria x ananassa HOM05D005871 ORTHO05D003654 2.7e-06 56.6 217 28.6
TWI38G1492 Tripterygium wilfordii HOM05D005871 ORTHO05D003654 4.7e-06 55.8 218 29.4
CiPaw.11G202600 Carya illinoinensis HOM05D005871 ORTHO05D003654 6.1e-06 55.5 209 34.4
Duzib138G0120 Durio zibethinus HOM05D008806 ORTHO05D003654 6.1e-06 55.5 215 30.2
Nn1g07488 Nelumbo nucifera HOM05D005871 ORTHO05D003654 6.1e-06 55.5 231 28.1
Thecc.01G195400 Theobroma cacao HOM05D008806 ORTHO05D003654 6.1e-06 55.5 214 29.4
Sed0004181 Sechium edule HOM05D005871 ORTHO05D003654 8.0e-06 55.1 208 35.6
Sc16g0008000 Simmondsia chinensis HOM05D005871 ORTHO05D003654 8.0e-06 55.1 244 32.8


User provided reference genes

Program Settings