Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s1230 Capsella rubella HOM05D007991 ORTHO05D010158 4.4e-40 167.5 86 100.0
AT3G12960 Arabidopsis thaliana HOM05D007991 ORTHO05D010158 1.8e-33 145.6 87 86.2
Sp3g11110 Schrenkiella parvula HOM05D007991 ORTHO05D010158 1.2e-29 132.9 89 80.9
BcaC09g48284 Brassica carinata HOM05D007991 ORTHO05D010158 4.5e-29 131.0 89 78.7
C01p52180 Brassica napus HOM05D007991 ORTHO05D010158 4.5e-29 131.0 89 78.7
BolC1t05158H Brassica oleracea HOM05D007991 ORTHO05D010158 4.5e-29 131.0 89 78.7
BraA01t04089Z Brassica rapa HOM05D007991 ORTHO05D010158 2.2e-28 128.6 89 77.5
BcaB04g21024 Brassica carinata HOM05D007991 ORTHO05D010158 8.5e-28 126.7 89 76.4
CARHR087490 Cardamine hirsuta HOM05D007991 ORTHO05D010158 1.9e-27 125.6 88 77.3
Thhalv10022193m.g Eutrema salsugineum HOM05D007991 ORTHO05D010158 1.9e-27 125.6 90 76.7
AL3G24640 Arabidopsis lyrata HOM05D007991 ORTHO05D010158 5.7e-24 114.0 60 95.0
Medtr2g069650 Medicago truncatula HOM05D007991 ORTHO05D010158 3.5e-21 104.8 87 65.5
Aa31LG8G190 Aethionema arabicum HOM05D007991 ORTHO05D010158 5.0e-20 100.9 78 67.9
TPR.G9765 Trifolium pratense HOM05D007991 ORTHO05D010158 7.2e-19 97.1 79 63.3
MD05G1219200 Malus domestica HOM05D007991 ORTHO05D010158 4.7e-18 94.4 77 62.3
Ah.07g206310 Amaranthus hybridus HOM05D007991 ORTHO05D010158 4.0e-17 91.3 74 63.5
GSVIVG01012568001 Vitis vinifera HOM05D007991 ORTHO05D010158 1.5e-16 89.4 53 83.0
GSVIVG01035227001 Vitis vinifera HOM05D007991 ORTHO05D010158 1.5e-16 89.4 53 83.0
Glyma.08G172800 Glycine max HOM05D007991 ORTHO05D010158 5.7e-16 87.4 77 58.4
Lalb_Chr19g0133391 Lupinus albus HOM05D007991 ORTHO05D010158 5.7e-16 87.4 79 57.0
Nn7g37867 Nelumbo nucifera HOM05D007991 ORTHO05D010158 7.5e-16 87.0 78 60.3
Prupe.4G140900 Prunus persica HOM05D007991 ORTHO05D010158 7.5e-16 87.0 57 70.2
PGR042G3415 Punica granatum HOM05D007991 ORTHO05D010158 7.5e-16 87.0 53 77.4
Ciclev10023629m.g Citrus clementina HOM05D007991 ORTHO05D010158 9.8e-16 86.7 85 55.3
TWI39G0184 Tripterygium wilfordii HOM05D007991 ORTHO05D010158 9.8e-16 86.7 55 74.5
Cpa.g.sc10.36 Carica papaya HOM05D007991 ORTHO05D010158 1.3e-15 86.3 59 71.2
Gohir.A11G002600 Gossypium hirsutum HOM05D007991 ORTHO05D010158 1.7e-15 85.9 54 74.1
Lsat_1_v5_gn_7_112301 Lactuca sativa HOM05D007991 ORTHO05D010158 1.7e-15 85.9 53 77.4
Atru.chr8.1056 Acer truncatum HOM05D007991 ORTHO05D010158 2.2e-15 85.5 53 75.5
ECA236G0423 Erigeron canadensis HOM05D007991 ORTHO05D010158 2.2e-15 85.5 59 71.2
Manes.06G170901 Manihot esculenta HOM05D007991 ORTHO05D010158 2.2e-15 85.5 60 71.7
Ca_03685_v3 Cicer arietinum L. HOM05D007991 ORTHO05D010158 3.7e-15 84.7 73 61.6
COL.COLO4_28875 Corchorus olitorius HOM05D007991 ORTHO05D010158 3.7e-15 84.7 82 54.9
COL.COLO4_04148 Corchorus olitorius HOM05D007991 ORTHO05D010158 6.3e-15 84.0 53 73.6
Manes.06G170500 Manihot esculenta HOM05D007991 ORTHO05D010158 6.3e-15 84.0 70 65.7
CANSAT80G1088 Cannabis sativa HOM05D007991 ORTHO05D010158 8.3e-15 83.6 67 61.2
Gorai.007G003200 Gossypium raimondii HOM05D007991 ORTHO05D010158 8.3e-15 83.6 54 72.2
Lj3g0014492 Lotus japonicus HOM05D007991 ORTHO05D010158 8.3e-15 83.6 66 65.2
Aqoxy6G00820 Aquilegia oxysepala HOM05D007991 ORTHO05D010158 1.1e-14 83.2 75 57.3
Cfa019429 Carpinus fangiana HOM05D007991 ORTHO05D010158 1.1e-14 83.2 50 76.0
Lalb_Chr03g0031611 Lupinus albus HOM05D007991 ORTHO05D010158 1.1e-14 83.2 53 71.7
CiPaw.04G012700 Carya illinoinensis HOM05D007991 ORTHO05D010158 1.4e-14 82.8 88 50.0
ClCG11G016360 Citrullus lanatus HOM05D007991 ORTHO05D010158 1.4e-14 82.8 90 52.2
ClCG11G016370 Citrullus lanatus HOM05D007991 ORTHO05D010158 1.4e-14 82.8 90 52.2
QL04p074011 Quercus lobata HOM05D007991 ORTHO05D010158 1.4e-14 82.8 84 58.3
RcHm_v2.0_Chr5g0026701 Rosa chinensis HOM05D007991 ORTHO05D010158 1.4e-14 82.8 84 52.4
CsaV3_4G031820 Cucumis sativus L. HOM05D005971 ORTHO05D007459 1.8e-14 82.4 68 64.7
FAN16G1552 Fragaria x ananassa HOM05D007991 ORTHO05D010158 1.8e-14 82.4 77 57.1
Peaxi162Scf00452g00812 Petunia axillaris HOM05D007991 ORTHO05D010158 1.8e-14 82.4 55 70.9
MELO3C010561.2 Cucumis melo HOM05D007991 ORTHO05D010158 2.4e-14 82.0 83 54.2
Gohir.D11G002200 Gossypium hirsutum HOM05D007991 ORTHO05D010158 2.4e-14 82.0 54 70.4
FAN25G2658 Fragaria x ananassa HOM05D007991 ORTHO05D010158 3.1e-14 81.6 77 57.1
Psat1g011440 Pisum sativum HOM05D007991 ORTHO05D010158 3.1e-14 81.6 55 69.1
Solyc07g066400.1 Solanum lycopersicum HOM05D007991 ORTHO05D010158 3.1e-14 81.6 54 70.4
MBI02_g12653_MAGBIO Magnolia biondii HOM05D007991 ORTHO05D010158 5.4e-14 80.9 64 65.6
PGSC0003DMG400022239 Solanum tuberosum HOM05D007991 ORTHO05D010158 5.4e-14 80.9 54 70.4
HanXRQChr11g0334671 Helianthus annuus HOM05D007991 ORTHO05D010158 7.0e-14 80.5 59 67.8
CAN.G943.33 Capsicum annuum HOM05D007991 ORTHO05D010158 9.1e-14 80.1 54 68.5
FAN11G2864 Fragaria x ananassa HOM05D007991 ORTHO05D010158 9.1e-14 80.1 77 55.8
FAN21G1902 Fragaria x ananassa HOM05D007991 ORTHO05D010158 9.1e-14 80.1 77 55.8
Sopen07g034570 Solanum pennellii HOM05D007991 ORTHO05D010158 1.6e-13 79.3 54 70.4
EL10Ac4g08566 Beta vulgaris HOM05D007991 ORTHO05D010158 2.0e-13 79.0 75 57.3
Sc16g0005380 Simmondsia chinensis HOM05D007991 ORTHO05D010158 1.7e-12 75.9 69 55.1
Phvul.005G056100 Phaseolus vulgaris HOM05D007991 ORTHO05D010158 2.9e-12 75.1 74 48.6
Duzib205G1447 Durio zibethinus HOM05D007991 ORTHO05D010158 8.6e-12 73.6 51 64.7
Sed0025657 Sechium edule HOM05D007991 ORTHO05D010158 8.6e-12 73.6 70 57.1
PSO675G0275 Papaver somniferum HOM05D007991 ORTHO05D010158 1.1e-11 73.2 67 56.7
MD05G1300500 Malus domestica HOM05D007991 ORTHO05D010158 1.5e-11 72.8 48 72.9
Nitab4.5_0008437g0010 Nicotiana tabacum HOM05D007991 ORTHO05D010158 3.3e-11 71.6 58 62.1
SalBow2G0434 Salvia bowleyana HOM05D007991 ORTHO05D010158 5.5e-11 70.9 71 54.9
unitig_8.g4768 Utricularia gibba HOM05D007991 ORTHO05D010158 5.5e-11 70.9 53 67.9
Nn4g23994 Nelumbo nucifera HOM05D007991 ORTHO05D010158 7.2e-11 70.5 87 48.3
CSS0001388 Camellia sinensis var. sinensis HOM05D007991 ORTHO05D010158 8.0e-10 67.0 62 56.5
CSS0033446 Camellia sinensis var. sinensis HOM05D007991 ORTHO05D010158 1.5e-08 62.8 57 54.4
Os08g0104400 Oryza sativa ssp. japonica HOM05D007991 ORTHO05D010158 3.7e-07 58.2 64 42.2


User provided reference genes

Program Settings