Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s1173 Capsella rubella HOM05D004659 ORTHO05D005547 8.0e-94 347.1 172 100.0
AL3G24020 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 5.0e-88 327.8 170 95.9
AT3G12370 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 4.3e-87 324.7 170 94.1
Thhalv10022434m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 1.0e-85 320.1 172 91.9
CARHR086910 Cardamine hirsuta HOM05D004659 ORTHO05D005547 1.2e-84 316.6 172 90.7
Sp3g10560 Schrenkiella parvula HOM05D004659 ORTHO05D005547 1.2e-84 316.6 172 90.1
A05p37030 Brassica napus HOM05D004659 ORTHO05D005547 4.1e-82 308.1 171 86.5
BcaC05g29267 Brassica carinata HOM05D004659 ORTHO05D005547 7.0e-82 307.4 171 86.0
C05p55460 Brassica napus HOM05D004659 ORTHO05D005547 7.0e-82 307.4 171 86.0
BolC5t34212H Brassica oleracea HOM05D004659 ORTHO05D005547 7.0e-82 307.4 171 86.0
C01p52890 Brassica napus HOM05D004659 ORTHO05D005547 1.2e-81 306.6 171 86.0
BraA05t22500Z Brassica rapa HOM05D004659 ORTHO05D005547 1.6e-81 306.2 171 86.0
BolC1t05226H Brassica oleracea HOM05D004659 ORTHO05D005547 3.5e-81 305.1 171 85.4
BcaC09g48234 Brassica carinata HOM05D004659 ORTHO05D005547 1.6e-78 296.2 167 84.4
Aa31sc153G80 Aethionema arabicum HOM05D004659 ORTHO05D005547 2.7e-73 278.9 167 79.0
AL6G24130 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 7.9e-49 197.6 144 63.9
CARHR199930 Cardamine hirsuta HOM05D004659 ORTHO05D005547 1.3e-48 196.8 144 63.2
AT5G13510 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 5.1e-48 194.9 144 62.5
Atru.chr12.612 Acer truncatum HOM05D004659 ORTHO05D005547 6.7e-48 194.5 146 63.0
Carub.0006s1167 Capsella rubella HOM05D004659 ORTHO05D005547 6.7e-48 194.5 140 64.3
THA.LOC104827313 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 6.7e-48 194.5 146 61.6
BcaC04g19111 Brassica carinata HOM05D004659 ORTHO05D005547 7.4e-47 191.0 141 62.4
BolC2t06562H Brassica oleracea HOM05D004659 ORTHO05D005547 7.4e-47 191.0 140 62.9
BolC9t59202H Brassica oleracea HOM05D004659 ORTHO05D005547 7.4e-47 191.0 141 62.4
Sp6g30510 Schrenkiella parvula HOM05D004659 ORTHO05D005547 7.4e-47 191.0 140 62.9
BraA02t05172Z Brassica rapa HOM05D004659 ORTHO05D005547 9.6e-47 190.7 140 62.9
PGR031G1734 Punica granatum HOM05D004659 ORTHO05D005547 9.6e-47 190.7 146 61.6
THA.LOC104799364 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 1.3e-46 190.3 146 60.3
BcaNung01889 Brassica carinata HOM05D004659 ORTHO05D005547 2.1e-46 189.5 140 62.1
A10p24760 Brassica napus HOM05D004659 ORTHO05D005547 2.1e-46 189.5 140 62.1
C02p06210 Brassica napus HOM05D004659 ORTHO05D005547 2.1e-46 189.5 140 62.1
C09p63590 Brassica napus HOM05D004659 ORTHO05D005547 2.1e-46 189.5 140 62.1
BraA10t44539Z Brassica rapa HOM05D004659 ORTHO05D005547 2.1e-46 189.5 140 62.1
vmacro04881 Vaccinium macrocarpon HOM05D004659 ORTHO05D005547 2.1e-46 189.5 143 61.5
CiPaw.02G177400 Carya illinoinensis HOM05D004659 ORTHO05D005547 2.8e-46 189.1 146 61.0
Aa31sc127G30 Aethionema arabicum HOM05D004659 ORTHO05D005547 4.8e-46 188.3 146 58.9
Oeu017240.1 Olea europaea HOM05D004659 ORTHO05D005547 6.2e-46 188.0 148 60.1
Nitab4.5_0004104g0080 Nicotiana tabacum HOM05D004659 ORTHO05D005547 8.1e-46 187.6 143 62.2
Thhalv10014625m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 1.1e-45 187.2 140 61.4
arahy.Tifrunner.gnm1.ann1.23T474 Arachis hypogaea HOM05D004659 ORTHO05D005547 1.4e-45 186.8 143 61.5
SalBow4G3080 Salvia bowleyana HOM05D004659 ORTHO05D005547 1.4e-45 186.8 148 60.8
BcaNung01147 Brassica carinata HOM05D004659 ORTHO05D005547 1.8e-45 186.4 140 61.4
Peaxi162Scf00195g00083 Petunia axillaris HOM05D004659 ORTHO05D005547 2.4e-45 186.0 143 61.5
Ciclev10032705m.g Citrus clementina HOM05D004659 ORTHO05D005547 3.1e-45 185.7 140 61.4
Nitab4.5_0000691g0220 Nicotiana tabacum HOM05D004659 ORTHO05D005547 3.1e-45 185.7 143 61.5
VMungo0464G0639 Vigna mungo HOM05D004659 ORTHO05D005547 3.1e-45 185.7 146 60.3
Ca_21106_v3 Cicer arietinum L. HOM05D004659 ORTHO05D005547 9.0e-45 184.1 146 59.6
Cfa013817 Carpinus fangiana HOM05D004659 ORTHO05D005547 1.2e-44 183.7 139 62.6
Haze_22491 Corylus avellana HOM05D004659 ORTHO05D005547 1.5e-44 183.3 139 63.3
Lj1P926T21 Lonicera japonica HOM05D004659 ORTHO05D005547 2.6e-44 182.6 143 59.4
Phvul.004G002100 Phaseolus vulgaris HOM05D004659 ORTHO05D005547 2.6e-44 182.6 146 58.9
Rhsim03G0135900 Rhododendron simsii HOM05D004659 ORTHO05D005547 2.6e-44 182.6 144 59.0
CAN.G186.30 Capsicum annuum HOM05D004659 ORTHO05D005547 3.4e-44 182.2 143 60.1
MD10G1183400 Malus domestica HOM05D004659 ORTHO05D005547 4.5e-44 181.8 137 62.0
Manes.07G069200 Manihot esculenta HOM05D004659 ORTHO05D005547 4.5e-44 181.8 140 62.1
Prupe.8G222500 Prunus persica HOM05D004659 ORTHO05D005547 4.5e-44 181.8 134 63.4
TAR369G1054 Trochodendron aralioides HOM05D004659 ORTHO05D005547 4.5e-44 181.8 133 66.2
Medtr4g131540 Medicago truncatula HOM05D004659 ORTHO05D005547 7.6e-44 181.0 143 59.4
Solyc04g009540.1 Solanum lycopersicum HOM05D004659 ORTHO05D005547 7.6e-44 181.0 143 60.1
Sopen04g004700 Solanum pennellii HOM05D004659 ORTHO05D005547 7.6e-44 181.0 143 60.1
Hma1.2p1_2685F.1_g326920 Hydrangea macrophylla HOM05D004659 ORTHO05D005547 9.9e-44 180.6 144 59.7
MD05G1196100 Malus domestica HOM05D004659 ORTHO05D005547 9.9e-44 180.6 137 62.0
PGSC0003DMG400032570 Solanum tuberosum HOM05D004659 ORTHO05D005547 2.2e-43 179.5 143 59.4
CSS0038055 Camellia sinensis var. sinensis HOM05D004659 ORTHO05D005547 2.9e-43 179.1 143 57.3
ClCG02G013790 Citrullus lanatus HOM05D004659 ORTHO05D005547 2.9e-43 179.1 139 62.6
Psat4g007600 Pisum sativum HOM05D004659 ORTHO05D005547 2.9e-43 179.1 146 58.2
Actinidia03015 Actinidia chinensis HOM05D004659 ORTHO05D005547 3.8e-43 178.7 144 56.9
CDE02G4355 Ceratophyllum demersum HOM05D002697 ORTHO05D005547 6.4e-43 177.9 137 60.6
RcHm_v2.0_Chr6g0287931 Rosa chinensis HOM05D004659 ORTHO05D005547 8.4e-43 177.6 139 59.7
Potri.010G215900 Populus trichocarpa HOM05D004659 ORTHO05D005547 1.1e-42 177.2 146 58.2
CDE09G1094 Ceratophyllum demersum HOM05D004659 ORTHO05D005547 1.4e-42 176.8 136 61.0
PSO339G6228 Papaver somniferum HOM05D004659 ORTHO05D005547 1.4e-42 176.8 133 61.7
PSO384G3929 Papaver somniferum HOM05D004659 ORTHO05D005547 1.4e-42 176.8 133 61.7
Cpa.g.sc1.279 Carica papaya HOM05D004659 ORTHO05D005547 1.9e-42 176.4 140 60.0
Potri.008G045800 Populus trichocarpa HOM05D004659 ORTHO05D005547 2.4e-42 176.0 146 58.2
Sabra10G0166900 Salix brachista HOM05D004659 ORTHO05D005547 2.4e-42 176.0 146 58.2
CANSAT35G1484 Cannabis sativa HOM05D004659 ORTHO05D005547 3.2e-42 175.6 139 60.4
Lj4g0017760 Lotus japonicus HOM05D004659 ORTHO05D005547 3.2e-42 175.6 141 58.9
Sabra08G0032100 Salix brachista HOM05D004659 ORTHO05D005547 3.2e-42 175.6 146 59.6
Sc09g0006840 Simmondsia chinensis HOM05D004659 ORTHO05D005547 3.2e-42 175.6 144 56.9
CsaV3_5G006380 Cucumis sativus L. HOM05D004659 ORTHO05D005547 4.2e-42 175.3 137 62.0
MSTRG.9197 Avicennia marina HOM05D004659 ORTHO05D005547 5.5e-42 174.9 148 57.4
TWI38G0010 Tripterygium wilfordii HOM05D004659 ORTHO05D005547 5.5e-42 174.9 140 58.6
Aqoxy4G03156 Aquilegia oxysepala HOM05D004659 ORTHO05D005547 7.1e-42 174.5 140 58.6
MELO3C011720.2 Cucumis melo HOM05D004659 ORTHO05D005547 7.1e-42 174.5 137 61.3
ECA232G1287 Erigeron canadensis HOM05D004659 ORTHO05D005547 7.1e-42 174.5 140 58.6
Glyma.17G075900 Glycine max HOM05D004659 ORTHO05D005547 7.1e-42 174.5 136 60.3
Gohir.A05G298900 Gossypium hirsutum HOM05D004659 ORTHO05D005547 7.1e-42 174.5 146 57.5
HanXRQChr09g0247171 Helianthus annuus HOM05D004659 ORTHO05D005547 7.1e-42 174.5 137 59.9
Nn2g10610 Nelumbo nucifera HOM05D004659 ORTHO05D005547 7.1e-42 174.5 136 61.0
Gohir.D05G298600 Gossypium hirsutum HOM05D004659 ORTHO05D005547 9.3e-42 174.1 146 57.5
Gorai.009G315800 Gossypium raimondii HOM05D004659 ORTHO05D005547 9.3e-42 174.1 146 57.5
Cc09_g02380 Coffea canephora HOM05D004659 ORTHO05D005547 2.7e-41 172.6 133 60.9
Lalb_Chr07g0179691 Lupinus albus HOM05D004659 ORTHO05D005547 2.7e-41 172.6 136 59.6
MBI05_g34749_MAGBIO Magnolia biondii HOM05D004659 ORTHO05D005547 3.5e-41 172.2 141 56.7
QL08p057255 Quercus lobata HOM05D004659 ORTHO05D005547 4.6e-41 171.8 140 58.6
SGA_v2.0_scaffold62G21448 Striga asiatica HOM05D004659 ORTHO05D005547 4.6e-41 171.8 148 55.4
FvH4_2g21340 Fragaria vesca HOM05D004659 ORTHO05D005547 6.0e-41 171.4 139 58.3
FAN24G1009 Fragaria x ananassa HOM05D004659 ORTHO05D005547 6.0e-41 171.4 139 58.3
AUR62027894 Chenopodium quinoa HOM05D004659 ORTHO05D005547 1.0e-40 170.6 144 56.9
Lsat_1_v5_gn_9_66541 Lactuca sativa HOM05D004659 ORTHO05D005547 1.0e-40 170.6 137 58.4
Sed0009994 Sechium edule HOM05D004659 ORTHO05D005547 1.8e-40 169.9 136 58.8
AUR62036014 Chenopodium quinoa HOM05D004659 ORTHO05D005547 2.3e-40 169.5 144 56.2
Os03g0284400 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 2.3e-40 169.5 143 59.4
unitig_46.g18586 Utricularia gibba HOM05D004659 ORTHO05D005547 3.0e-40 169.1 142 58.5
Nn8g38769 Nelumbo nucifera HOM05D004659 ORTHO05D005547 3.9e-40 168.7 133 60.2
Ah.10g033100 Amaranthus hybridus HOM05D004659 ORTHO05D005547 5.1e-40 168.3 138 57.2
DCAR_019149 Daucus carota HOM05D004659 ORTHO05D005547 1.5e-39 166.8 140 57.1
SMO239G0117 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 1.5e-39 166.8 138 58.0
COL.COLO4_23776 Corchorus olitorius HOM05D004659 ORTHO05D005547 4.3e-39 165.2 136 58.1
Thecc.10G065300 Theobroma cacao HOM05D004659 ORTHO05D005547 4.3e-39 165.2 137 58.4
Zm00001eb397230 Zea mays HOM05D004659 ORTHO05D005547 5.6e-39 164.9 141 58.2
SMO001G0016 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 9.6e-39 164.1 148 55.4
ATR0594G228 Amborella trichopoda HOM05D004659 ORTHO05D005547 1.3e-38 163.7 139 53.2
Zm00001eb013020 Zea mays HOM05D004659 ORTHO05D005547 1.3e-38 163.7 141 57.4
Pp3c2_35950 Physcomitrium patens HOM05D004659 ORTHO05D005547 1.1e-37 160.6 142 53.5
Mapoly0115s0051 Marchantia polymorpha HOM05D004659 ORTHO05D005547 1.4e-37 160.2 144 54.2
Duzib106G0066 Durio zibethinus HOM05D004659 ORTHO05D005547 5.3e-37 158.3 140 54.3
AagrBONN_evm.TU.Sc2ySwM_228.2422 Anthoceros agrestis HOM05D004659 ORTHO05D005547 6.9e-37 157.9 136 55.1
Pp3c1_1330 Physcomitrium patens HOM05D004659 ORTHO05D005547 8.4e-35 151.0 137 51.8
TPR.G37110 Trifolium pratense HOM05D004659 ORTHO05D005547 1.1e-34 150.6 114 59.6
Lalb_Chr13g0301081 Lupinus albus HOM05D004659 ORTHO05D005547 2.5e-34 149.4 136 55.1
Dinv31375 Davidia involucrata HOM05D004659 ORTHO05D005547 4.6e-33 145.2 104 67.3
HPP92_012064 Vanilla planifolia HOM05D004659 ORTHO05D005547 1.5e-31 140.2 175 44.6
Zm00001eb355270 Zea mays HOM05D004659 ORTHO05D005547 1.5e-28 130.2 144 43.8
SMO306G0014 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 3.4e-28 129.0 110 61.8
CBR_g32465 Chara braunii HOM05D004659 ORTHO05D005547 1.4e-26 123.6 149 44.3
Os05g0121500 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 2.5e-26 122.9 160 40.6
A02p02000 Brassica napus HOM05D004659 ORTHO05D005547 9.7e-23 110.9 81 59.3
Sc01g0005590 Simmondsia chinensis HOM05D004659 ORTHO05D005547 1.1e-21 107.5 159 40.3
Sc26g0002120 Simmondsia chinensis HOM05D004659 ORTHO05D005547 1.3e-19 100.5 159 37.7
Hund23274 Selenicereus undatus HOM05D004659 ORTHO05D005547 2.2e-19 99.8 160 36.9
Sc01g0009170 Simmondsia chinensis HOM05D004659 ORTHO05D005547 5.0e-19 98.6 147 41.5
Glyma.13G155300 Glycine max HOM05D004659 ORTHO05D005547 1.1e-18 97.4 79 54.4
BcaB01g05353 Brassica carinata HOM05D004659 ORTHO05D005547 1.2e-17 94.0 111 46.8
Ah.09g233850 Amaranthus hybridus HOM05D004659 ORTHO05D005547 3.6e-17 92.4 144 36.8
Haze_16952 Corylus avellana HOM05D004659 ORTHO05D005547 8.8e-16 87.8 158 36.1
PRCOL_00005567 Prasinoderma coloniale HOM05D004659 ORTHO05D005547 5.7e-15 85.1 123 34.1
EL10Ac6g15306 Beta vulgaris HOM05D004659 ORTHO05D005547 1.7e-14 83.6 153 33.3
Zm00001eb342870 Zea mays HOM05D004659 ORTHO05D005547 6.9e-13 78.2 71 49.3
Rhsim07G0202500 Rhododendron simsii HOM05D004659 ORTHO05D005547 1.5e-12 77.0 63 60.3
AUR62043493 Chenopodium quinoa HOM05D004659 ORTHO05D005547 1.0e-11 74.3 104 40.4
Pp3c11_2850 Physcomitrium patens HOM05D004659 ORTHO05D005547 1.3e-11 73.9 67 53.7
Cfa001576 Carpinus fangiana HOM05D004659 ORTHO05D005547 1.9e-10 70.1 63 54.0
MD17G1117700 Malus domestica HOM05D004659 ORTHO05D005547 4.7e-09 65.5 68 47.1
AUR62003563 Chenopodium quinoa HOM05D004659 ORTHO05D005547 6.3e-06 55.1 84 38.1
AUR62017877 Chenopodium quinoa HOM05D004659 ORTHO05D005547 6.3e-06 55.1 84 38.1


User provided reference genes

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