Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s1171 Capsella rubella HOM05D006323 ORTHO05D007827 2.1e-252 875.2 425 100.0
AL3G24000 Arabidopsis lyrata HOM05D006323 ORTHO05D007827 9.8e-218 760.0 427 87.8
AT3G12350 Arabidopsis thaliana HOM05D006323 ORTHO05D007827 1.0e-214 750.0 427 86.7
Sp6g10510 Schrenkiella parvula HOM05D006323 ORTHO05D007827 1.6e-188 662.9 431 78.7
Thhalv10028685m.g Eutrema salsugineum HOM05D006323 ORTHO05D007827 5.8e-186 654.4 429 77.4
CARHR287100 Cardamine hirsuta HOM05D006323 ORTHO05D007827 6.9e-179 630.9 420 75.7
C03p33680 Brassica napus HOM05D006323 ORTHO05D007827 9.0e-171 604.0 426 73.5
BolC3t15688H Brassica oleracea HOM05D006323 ORTHO05D007827 9.0e-171 604.0 426 73.5
BcaB01g02882 Brassica carinata HOM05D006323 ORTHO05D007827 1.2e-170 603.6 428 73.1
BcaC01g04786 Brassica carinata HOM05D006323 ORTHO05D007827 4.2e-168 595.1 425 72.0
A03p27900 Brassica napus HOM05D006323 ORTHO05D007827 3.3e-165 585.5 420 71.0
BraA03t12002Z Brassica rapa HOM05D006323 ORTHO05D007827 7.4e-165 584.3 419 70.9
THA.LOC104825780 Tarenaya hassleriana HOM05D006323 ORTHO05D007827 7.4e-157 557.8 424 67.5
Aa31LG5G21510 Aethionema arabicum HOM05D006323 ORTHO05D007827 2.6e-154 549.3 430 66.0
BcaC01g04794 Brassica carinata HOM05D006323 ORTHO05D007827 3.8e-153 545.4 425 68.0
Cpa.g.sc142.34 Carica papaya HOM05D006323 ORTHO05D007827 1.4e-136 490.3 448 56.5
Cpa.g.sc142.31 Carica papaya HOM05D006323 ORTHO05D007827 1.9e-136 490.0 448 56.7
Dinv44950 Davidia involucrata HOM05D006323 ORTHO05D007827 3.1e-123 446.0 456 53.3
Haze_22429 Corylus avellana HOM05D006323 ORTHO05D007827 1.6e-122 443.7 456 51.3
Actinidia38108 Actinidia chinensis HOM05D006323 ORTHO05D007827 4.5e-122 442.2 448 52.5
Nn5g30609 Nelumbo nucifera HOM05D006323 ORTHO05D007827 7.7e-122 441.4 457 52.5
Duzib093G0619 Durio zibethinus HOM05D006323 ORTHO05D007827 1.0e-121 441.0 448 54.0
Thecc.08G088000 Theobroma cacao HOM05D006323 ORTHO05D007827 1.7e-121 440.3 447 53.5
Hma1.2p1_0819F.1_g223630 Hydrangea macrophylla HOM05D006323 ORTHO05D007827 3.2e-120 436.0 455 53.0
TAR381G0342 Trochodendron aralioides HOM05D006323 ORTHO05D007827 1.2e-119 434.1 456 52.2
TAR381G1608 Trochodendron aralioides HOM05D006323 ORTHO05D007827 2.1e-119 433.3 456 52.0
CSS0045238 Camellia sinensis var. sinensis HOM05D006323 ORTHO05D007827 3.6e-119 432.6 460 52.2
QL12p038177 Quercus lobata HOM05D006323 ORTHO05D007827 1.0e-118 431.0 455 52.1
CiPaw.07G174200 Carya illinoinensis HOM05D006323 ORTHO05D007827 1.4e-118 430.6 456 49.8
ClCG08G016540 Citrullus lanatus HOM05D006323 ORTHO05D007827 2.3e-118 429.9 451 50.3
Cfa013771 Carpinus fangiana HOM05D006323 ORTHO05D007827 5.2e-118 428.7 456 50.2
Ciclev10001174m.g Citrus clementina HOM05D006323 ORTHO05D007827 2.0e-117 426.8 445 52.4
TWI56G0563 Tripterygium wilfordii HOM05D006323 ORTHO05D007827 4.4e-117 425.6 447 50.6
CSS0024022 Camellia sinensis var. sinensis HOM05D006323 ORTHO05D007827 7.5e-117 424.9 460 51.5
Gohir.D05G213700 Gossypium hirsutum HOM05D006323 ORTHO05D007827 1.3e-116 424.1 449 51.4
Gorai.009G220400 Gossypium raimondii HOM05D006323 ORTHO05D007827 1.3e-116 424.1 445 51.9
MELO3C010800.2 Cucumis melo HOM05D006323 ORTHO05D007827 6.3e-116 421.8 449 50.1
CsaV3_2G026070 Cucumis sativus L. HOM05D006323 ORTHO05D007827 1.1e-115 421.0 451 49.9
Manes.18G047100 Manihot esculenta HOM05D006323 ORTHO05D007827 1.8e-115 420.2 440 53.2
Gohir.A05G210400 Gossypium hirsutum HOM05D006323 ORTHO05D007827 7.0e-115 418.3 445 51.5
Atru.chr13.839 Acer truncatum HOM05D006323 ORTHO05D007827 2.7e-114 416.4 438 51.6
Eucgr.F00088 Eucalyptus grandis HOM05D006323 ORTHO05D007827 3.8e-113 412.5 448 48.7
Nitab4.5_0003725g0070 Nicotiana tabacum HOM05D006323 ORTHO05D007827 1.1e-112 411.0 446 50.4
Sed0007452 Sechium edule HOM05D006323 ORTHO05D007827 1.5e-112 410.6 446 50.0
Prupe.1G422100 Prunus persica HOM05D006323 ORTHO05D007827 1.9e-112 410.2 451 50.6
vmacro22049 Vaccinium macrocarpon HOM05D006323 ORTHO05D007827 3.3e-112 409.5 463 49.0
Lj5g0017088 Lotus japonicus HOM05D006323 ORTHO05D007827 2.3e-110 403.3 447 46.8
FvH4_2g32960 Fragaria vesca HOM05D006323 ORTHO05D007827 5.2e-110 402.1 442 51.4
HanXRQChr10g0298611 Helianthus annuus HOM05D006323 ORTHO05D007827 8.9e-110 401.4 435 51.3
Hund05295 Selenicereus undatus HOM05D006323 ORTHO05D007827 8.9e-110 401.4 442 47.3
Oeu016579.1 Olea europaea HOM05D006323 ORTHO05D007827 2.6e-109 399.8 436 47.9
PGR083G0013 Punica granatum HOM05D006323 ORTHO05D007827 2.6e-109 399.8 448 48.7
Nitab4.5_0000497g0170 Nicotiana tabacum HOM05D006323 ORTHO05D007827 3.4e-109 399.4 446 49.3
FAN24G0652 Fragaria x ananassa HOM05D006323 ORTHO05D007827 4.4e-109 399.1 442 51.1
Ca_13213_v3 Cicer arietinum L. HOM05D006323 ORTHO05D007827 1.7e-108 397.1 452 48.2
FAN20G1244 Fragaria x ananassa HOM05D006323 ORTHO05D007827 1.7e-108 397.1 440 50.5
Migut.N02786 Erythranthe guttata HOM05D006323 ORTHO05D007827 2.2e-108 396.7 432 46.8
PGSC0003DMG400010620 Solanum tuberosum HOM05D006323 ORTHO05D007827 2.2e-108 396.7 443 49.0
Sabra02G0092600 Salix brachista HOM05D006323 ORTHO05D007827 3.7e-108 396.0 438 50.2
TPR.G13155 Trifolium pratense HOM05D006323 ORTHO05D007827 4.9e-108 395.6 452 47.6
PSO675G0675 Papaver somniferum HOM05D006323 ORTHO05D007827 6.3e-108 395.2 466 47.9
Sopen04g031380 Solanum pennellii HOM05D006323 ORTHO05D007827 6.3e-108 395.2 443 48.8
CSS0010458 Camellia sinensis var. sinensis HOM05D006323 ORTHO05D007827 8.3e-108 394.8 459 48.1
Potri.002G117900 Populus trichocarpa HOM05D006323 ORTHO05D007827 8.3e-108 394.8 437 49.4
PSO541G5960 Papaver somniferum HOM05D006323 ORTHO05D007827 1.1e-107 394.4 466 47.6
Aqoxy6G02596 Aquilegia oxysepala HOM05D006323 ORTHO05D007827 1.4e-107 394.0 464 47.2
Medtr1g017940 Medicago truncatula HOM05D006323 ORTHO05D007827 2.4e-107 393.3 451 46.8
FAN27G3326 Fragaria x ananassa HOM05D006323 ORTHO05D007827 3.1e-107 392.9 441 50.1
FAN15G2783 Fragaria x ananassa HOM05D006323 ORTHO05D007827 4.1e-107 392.5 441 49.7
EL10Ac1g02373 Beta vulgaris HOM05D006323 ORTHO05D007827 9.2e-107 391.3 447 46.3
CAN.G724.32 Capsicum annuum HOM05D006323 ORTHO05D007827 2.7e-106 389.8 436 48.9
CSS0050369 Camellia sinensis var. sinensis HOM05D006323 ORTHO05D007827 7.8e-106 388.3 457 47.5
RcHm_v2.0_Chr6g0309741 Rosa chinensis HOM05D006323 ORTHO05D007827 1.7e-105 387.1 449 48.8
Rhsim07G0219300 Rhododendron simsii HOM05D006323 ORTHO05D007827 5.0e-105 385.6 458 47.8
Psat6g018000 Pisum sativum HOM05D006323 ORTHO05D007827 8.6e-105 384.8 455 46.6
CANSAT25G0442 Cannabis sativa HOM05D006323 ORTHO05D007827 2.5e-104 383.3 456 48.9
arahy.Tifrunner.gnm1.ann1.JK4I75 Arachis hypogaea HOM05D006323 ORTHO05D007827 3.3e-104 382.9 471 45.2
Lalb_Chr14g0368151 Lupinus albus HOM05D006323 ORTHO05D007827 1.4e-102 377.5 469 45.6
Lsat_1_v5_gn_1_1301 Lactuca sativa HOM05D006323 ORTHO05D007827 5.8e-101 372.1 433 48.0
Phvul.001G028300 Phaseolus vulgaris HOM05D006323 ORTHO05D007827 2.9e-100 369.8 435 45.7
SalBow2G0555 Salvia bowleyana HOM05D006323 ORTHO05D007827 1.1e-99 367.9 448 45.5
Glyma.17G234600 Glycine max HOM05D006323 ORTHO05D007827 2.4e-99 366.7 450 45.6
Glyma.14G089027 Glycine max HOM05D006323 ORTHO05D007827 4.6e-98 362.5 440 45.9
SGA_v2.0_scaffold28G11834 Striga asiatica HOM05D006323 ORTHO05D007827 6.6e-97 358.6 441 45.1
VMungo0647G1220 Vigna mungo HOM05D006323 ORTHO05D007827 8.9e-94 348.2 451 43.2
Ah.05g167080 Amaranthus hybridus HOM05D006323 ORTHO05D007827 7.5e-93 345.1 443 42.9
HPP92_013407 Vanilla planifolia HOM05D006323 ORTHO05D007827 1.7e-92 344.0 423 45.2
AUR62022472 Chenopodium quinoa HOM05D006323 ORTHO05D007827 1.9e-91 340.5 448 43.3
TAR625G0711 Trochodendron aralioides HOM05D006323 ORTHO05D007827 2.1e-90 337.0 416 45.4
ATR0739G201 Amborella trichopoda HOM05D006323 ORTHO05D007827 2.7e-90 336.7 481 42.6
GSVIVG01009337001 Vitis vinifera HOM05D006323 ORTHO05D007827 3.5e-90 336.3 461 43.0
CDE04G3275 Ceratophyllum demersum HOM05D006323 ORTHO05D007827 1.7e-89 334.0 451 42.8
arahy.Tifrunner.gnm1.ann1.694GR7 Arachis hypogaea HOM05D006323 ORTHO05D007827 9.9e-85 318.2 424 43.9
CAN.G724.31 Capsicum annuum HOM05D006323 ORTHO05D007827 1.1e-83 314.7 419 41.8
Sc26g0004210 Simmondsia chinensis HOM05D006323 ORTHO05D007827 7.8e-82 308.5 403 43.2
QL05p065459 Quercus lobata HOM05D006323 ORTHO05D007827 1.9e-80 303.9 299 54.5
AUR62037416 Chenopodium quinoa HOM05D006323 ORTHO05D007827 4.4e-77 292.7 426 39.0
HPP92_013383 Vanilla planifolia HOM05D006323 ORTHO05D007827 9.9e-69 265.0 346 42.8
Lj4A71T64 Lonicera japonica HOM05D006323 ORTHO05D007827 2.3e-65 253.8 318 45.9
Mapoly0007s0129 Marchantia polymorpha HOM05D006323 ORTHO05D007827 7.3e-64 248.8 481 33.5
SEGI_30290 Sequoiadendron giganteum HOM05D006323 ORTHO05D007827 1.9e-56 224.2 316 42.4
ECA247G3150 Erigeron canadensis HOM05D006323 ORTHO05D007827 5.6e-56 222.6 294 46.9
COL.COLO4_28496 Corchorus olitorius HOM05D006323 ORTHO05D007827 3.7e-55 219.9 188 54.8
TAR628G0857 Trochodendron aralioides HOM05D006323 ORTHO05D007827 4.0e-54 216.5 278 46.0
Cc10_g05020 Coffea canephora HOM05D006323 ORTHO05D007827 2.1e-50 204.1 271 43.2
Pp3c15_12240 Physcomitrium patens HOM05D006323 ORTHO05D007827 1.8e-46 191.0 511 29.9
Os12g0511000 Oryza sativa ssp. japonica HOM05D006323 ORTHO05D007827 2.0e-45 187.6 357 33.6
unitig_8.g4874 Utricularia gibba HOM05D006323 ORTHO05D007827 8.7e-41 172.2 214 42.1
AagrBONN_evm.TU.Sc2ySwM_362.2944 Anthoceros agrestis HOM05D006323 ORTHO05D007827 6.9e-38 162.5 459 26.8
CBR_g25752 Chara braunii HOM05D006323 ORTHO05D007827 3.1e-30 137.1 428 28.3
TAR623G1714 Trochodendron aralioides HOM05D006323 ORTHO05D007827 1.7e-28 131.3 102 55.9
HPP92_013381 Vanilla planifolia HOM05D006323 ORTHO05D007827 3.2e-27 127.1 190 41.6
FvH4_3g44630 Fragaria vesca HOM05D006323 ORTHO05D007827 3.0e-25 120.6 98 59.2
Eucgr.L02719 Eucalyptus grandis HOM05D006323 ORTHO05D007827 4.4e-24 116.7 149 41.6
unitig_8.g4875 Utricularia gibba HOM05D006323 ORTHO05D007827 1.8e-22 111.3 95 57.9
COL.COLO4_28497 Corchorus olitorius HOM05D006323 ORTHO05D007827 5.9e-21 106.3 129 45.0
Zm00001eb264620 Zea mays HOM05D006323 ORTHO05D007827 1.0e-17 95.5 221 30.8
TAR623G1335 Trochodendron aralioides HOM05D006323 ORTHO05D007827 4.4e-16 90.1 74 52.7
MD08G1081200 Malus domestica HOM05D006323 ORTHO05D007827 3.1e-14 84.0 114 46.5
Lj1P1160T24 Lonicera japonica HOM05D006323 ORTHO05D007827 1.3e-12 78.6 64 64.1
Eucgr.C01112 Eucalyptus grandis HOM05D006323 ORTHO05D007827 2.9e-12 77.4 63 58.7
Lj5P501T7 Lonicera japonica HOM05D006323 ORTHO05D007827 2.7e-10 70.9 67 58.2
SEGI_04434 Sequoiadendron giganteum HOM05D006323 ORTHO05D007827 2.7e-10 70.9 154 29.9
QL04p027551 Quercus lobata HOM05D006323 ORTHO05D007827 8.0e-10 69.3 92 42.4


User provided reference genes

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