Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s1152 Capsella rubella HOM05D006205 ORTHO05D007703 1.0e-215 753.1 361 100.0
AL3G23830 Arabidopsis lyrata HOM05D006205 ORTHO05D007703 3.0e-207 724.9 361 96.1
AT3G12150 Arabidopsis thaliana HOM05D006205 ORTHO05D007703 5.6e-206 720.7 361 95.3
Sp3g10390 Schrenkiella parvula HOM05D006205 ORTHO05D007703 4.9e-202 707.6 361 93.6
A05p37150 Brassica napus HOM05D006205 ORTHO05D007703 7.8e-200 700.3 361 92.0
C05p55580 Brassica napus HOM05D006205 ORTHO05D007703 7.8e-200 700.3 361 92.0
BolC5t34227H Brassica oleracea HOM05D006205 ORTHO05D007703 7.8e-200 700.3 361 92.0
Thhalv10021002m.g Eutrema salsugineum HOM05D006205 ORTHO05D007703 3.9e-199 698.0 362 92.0
BraA05t22513Z Brassica rapa HOM05D006205 ORTHO05D007703 1.5e-198 696.0 361 91.1
BcaC05g29277 Brassica carinata HOM05D006205 ORTHO05D007703 2.5e-198 695.3 359 91.6
A03p37470 Brassica napus HOM05D006205 ORTHO05D007703 2.4e-193 678.7 361 89.5
Aa31LG3G6360 Aethionema arabicum HOM05D006205 ORTHO05D007703 2.1e-192 675.6 390 84.9
BcaC01g04062 Brassica carinata HOM05D006205 ORTHO05D007703 3.5e-192 674.9 358 89.7
THA.LOC104809921 Tarenaya hassleriana HOM05D006205 ORTHO05D007703 6.0e-192 674.1 359 88.6
BraA03t12906Z Brassica rapa HOM05D006205 ORTHO05D007703 3.0e-191 671.8 359 89.1
C03p45470 Brassica napus HOM05D006205 ORTHO05D007703 3.3e-190 668.3 356 89.3
BolC3t16816H Brassica oleracea HOM05D006205 ORTHO05D007703 9.6e-190 666.8 356 89.0
Thecc.05G167100 Theobroma cacao HOM05D006205 ORTHO05D007703 3.2e-185 651.7 359 85.2
Ciclev10031918m.g Citrus clementina HOM05D006205 ORTHO05D007703 4.2e-185 651.4 359 85.0
Gorai.002G228500 Gossypium raimondii HOM05D006205 ORTHO05D007703 4.2e-185 651.4 359 84.7
Glyma.19G144900 Glycine max HOM05D006205 ORTHO05D007703 2.1e-184 649.0 359 84.4
CSS0013544 Camellia sinensis var. sinensis HOM05D006205 ORTHO05D007703 2.7e-184 648.7 359 84.4
Gohir.A01G194800 Gossypium hirsutum HOM05D006205 ORTHO05D007703 3.5e-184 648.3 359 84.1
arahy.Tifrunner.gnm1.ann1.ARGW3J Arachis hypogaea HOM05D006205 ORTHO05D007703 4.6e-184 647.9 359 84.7
Duzib106G0917 Durio zibethinus HOM05D006205 ORTHO05D007703 4.6e-184 647.9 359 84.7
arahy.Tifrunner.gnm1.ann1.68EW5P Arachis hypogaea HOM05D006205 ORTHO05D007703 1.0e-183 646.7 359 84.4
Gohir.D01G185000 Gossypium hirsutum HOM05D006205 ORTHO05D007703 1.0e-183 646.7 359 84.1
PGR142G1368 Punica granatum HOM05D006205 ORTHO05D007703 1.8e-183 646.0 358 83.2
Ca_08497_v3 Cicer arietinum L. HOM05D006205 ORTHO05D007703 3.9e-183 644.8 359 84.1
Ca_29722_v3 Cicer arietinum L. HOM05D006205 ORTHO05D007703 3.9e-183 644.8 359 84.1
Manes.09G031300 Manihot esculenta HOM05D006205 ORTHO05D007703 6.7e-183 644.0 359 82.5
Potri.006G058400 Populus trichocarpa HOM05D006205 ORTHO05D007703 6.7e-183 644.0 358 84.4
TPR.G4691 Trifolium pratense HOM05D006205 ORTHO05D007703 6.7e-183 644.0 359 83.8
Eucgr.K01821 Eucalyptus grandis HOM05D006205 ORTHO05D007703 1.5e-182 642.9 359 83.8
Prupe.7G072500 Prunus persica HOM05D006205 ORTHO05D007703 1.5e-182 642.9 359 84.1
Haze_19942 Corylus avellana HOM05D006205 ORTHO05D007703 1.9e-182 642.5 358 84.9
Lalb_Chr18g0047621 Lupinus albus HOM05D006205 ORTHO05D007703 2.5e-182 642.1 359 84.4
Potri.016G049700 Populus trichocarpa HOM05D006205 ORTHO05D007703 2.5e-182 642.1 358 83.2
Phvul.001G139800 Phaseolus vulgaris HOM05D006205 ORTHO05D007703 3.3e-182 641.7 359 83.0
CiPaw.09G032800 Carya illinoinensis HOM05D006205 ORTHO05D007703 4.3e-182 641.3 359 83.8
Sabra06G0041700 Salix brachista HOM05D006205 ORTHO05D007703 7.4e-182 640.6 358 84.4
Duzib093G1988 Durio zibethinus HOM05D006205 ORTHO05D007703 2.1e-181 639.0 359 83.3
Hund19180 Selenicereus undatus HOM05D006205 ORTHO05D007703 2.1e-181 639.0 359 83.0
Actinidia17259 Actinidia chinensis HOM05D006205 ORTHO05D007703 2.8e-181 638.6 359 82.7
Lju124A32T75 Lonicera japonica HOM05D006205 ORTHO05D007703 3.7e-181 638.3 359 83.8
Sabra16G0053600 Salix brachista HOM05D006205 ORTHO05D007703 8.1e-181 637.1 358 83.0
Dinv24098 Davidia involucrata HOM05D006205 ORTHO05D007703 1.4e-180 636.3 359 82.5
FvH4_6g22800 Fragaria vesca HOM05D006205 ORTHO05D007703 1.8e-180 636.0 355 85.1
FAN14G5729 Fragaria x ananassa HOM05D006205 ORTHO05D007703 1.8e-180 636.0 355 85.1
VMungo1383G0076 Vigna mungo HOM05D006205 ORTHO05D007703 3.1e-180 635.2 359 82.2
FAN02G0014 Fragaria x ananassa HOM05D006205 ORTHO05D007703 4.0e-180 634.8 355 84.8
Nitab4.5_0006846g0010 Nicotiana tabacum HOM05D006205 ORTHO05D007703 9.0e-180 633.6 359 81.3
Psat3g069960 Pisum sativum HOM05D006205 ORTHO05D007703 9.0e-180 633.6 359 83.0
Medtr7g092680 Medicago truncatula HOM05D006205 ORTHO05D007703 1.2e-179 633.3 359 83.3
Cpa.g.sc85.111 Carica papaya HOM05D006205 ORTHO05D007703 1.5e-179 632.9 359 83.8
Lj1g0022121 Lotus japonicus HOM05D006205 ORTHO05D007703 2.0e-179 632.5 393 77.9
QL07p022686 Quercus lobata HOM05D006205 ORTHO05D007703 5.8e-179 630.9 359 83.6
TAR623G1003 Trochodendron aralioides HOM05D006205 ORTHO05D007703 1.7e-178 629.4 358 83.0
MSTRG.26097 Avicennia marina HOM05D006205 ORTHO05D007703 2.2e-178 629.0 359 81.9
Hma1.2p1_1575F.1_g291620 Hydrangea macrophylla HOM05D006205 ORTHO05D007703 2.9e-178 628.6 359 80.5
FAN05G5560 Fragaria x ananassa HOM05D006205 ORTHO05D007703 3.8e-178 628.2 355 84.2
Lsat_1_v5_gn_8_79241 Lactuca sativa HOM05D006205 ORTHO05D007703 4.9e-178 627.9 359 81.1
RcHm_v2.0_Chr3g0480421 Rosa chinensis HOM05D006205 ORTHO05D007703 1.1e-177 626.7 355 83.7
CAN.G85.9 Capsicum annuum HOM05D006205 ORTHO05D007703 1.4e-177 626.3 359 81.1
BcaB04g18694 Brassica carinata HOM05D006205 ORTHO05D007703 9.3e-177 623.6 338 88.8
DCAR_013564 Daucus carota HOM05D006205 ORTHO05D007703 9.3e-177 623.6 359 81.3
EL10Ac3g06974 Beta vulgaris HOM05D006205 ORTHO05D007703 1.2e-176 623.2 358 80.7
SGA_v2.0_scaffold94G28443 Striga asiatica HOM05D006205 ORTHO05D007703 2.1e-176 622.5 359 81.6
PGSC0003DMG400012937 Solanum tuberosum HOM05D006205 ORTHO05D007703 3.5e-176 621.7 359 79.9
Sed0025317 Sechium edule HOM05D006205 ORTHO05D007703 3.0e-175 618.6 359 80.8
Sc25g0005160 Simmondsia chinensis HOM05D006205 ORTHO05D007703 3.9e-175 618.2 359 79.9
Nn2g15532 Nelumbo nucifera HOM05D006205 ORTHO05D007703 6.7e-175 617.5 357 81.2
CANSAT64G2514 Cannabis sativa HOM05D006205 ORTHO05D007703 8.7e-175 617.1 358 81.0
vmacro09103 Vaccinium macrocarpon HOM05D006205 ORTHO05D007703 1.9e-174 615.9 369 79.1
Sopen03g017680 Solanum pennellii HOM05D006205 ORTHO05D007703 2.5e-174 615.5 359 79.4
Solyc03g064030.3 Solanum lycopersicum HOM05D006205 ORTHO05D007703 5.7e-174 614.4 359 79.4
Cc06_g16310 Coffea canephora HOM05D006205 ORTHO05D007703 1.3e-173 613.2 358 79.6
HanXRQChr05g0132791 Helianthus annuus HOM05D006205 ORTHO05D007703 1.3e-173 613.2 358 78.2
MELO3C009648.2 Cucumis melo HOM05D006205 ORTHO05D007703 2.1e-173 612.5 385 75.8
AUR62024356 Chenopodium quinoa HOM05D006205 ORTHO05D007703 4.8e-173 611.3 358 79.3
Migut.K00057 Erythranthe guttata HOM05D006205 ORTHO05D007703 2.4e-172 609.0 359 79.1
Aqoxy1G00212 Aquilegia oxysepala HOM05D006205 ORTHO05D007703 5.3e-172 607.8 359 78.3
QL93p2022_0017 Quercus lobata HOM05D006205 ORTHO05D007703 5.8e-171 604.4 417 71.9
TWI74G1063 Tripterygium wilfordii HOM05D006205 ORTHO05D007703 1.0e-170 603.6 340 82.9
ClCG10G017350 Citrullus lanatus HOM05D006205 ORTHO05D007703 1.1e-169 600.1 426 69.0
SalBow1G2518 Salvia bowleyana HOM05D006205 ORTHO05D007703 5.5e-169 597.8 401 72.3
AUR62025960 Chenopodium quinoa HOM05D006205 ORTHO05D007703 5.1e-167 591.3 358 77.7
PSO384G4504 Papaver somniferum HOM05D006205 ORTHO05D007703 5.7e-166 587.8 358 75.7
ATR0605G163 Amborella trichopoda HOM05D006205 ORTHO05D007703 2.2e-165 585.9 358 76.5
CDE10G0043 Ceratophyllum demersum HOM05D006205 ORTHO05D007703 6.3e-165 584.3 358 76.3
PSO339G0108 Papaver somniferum HOM05D006205 ORTHO05D007703 3.1e-164 582.0 360 74.7
GSVIVG01033369001 Vitis vinifera HOM05D006205 ORTHO05D007703 6.1e-160 567.8 314 85.4
unitig_899.g15081 Utricularia gibba HOM05D006205 ORTHO05D007703 7.9e-160 567.4 360 74.7
Zm00001eb236370 Zea mays HOM05D006205 ORTHO05D007703 3.3e-158 562.0 367 71.1
SEGI_33856 Sequoiadendron giganteum HOM05D006205 ORTHO05D007703 2.4e-156 555.8 357 72.5
Os02g0195000 Oryza sativa ssp. japonica HOM05D006205 ORTHO05D007703 5.3e-156 554.7 367 69.2
Nitab4.5_0000016g0140 Nicotiana tabacum HOM05D006205 ORTHO05D007703 1.4e-151 540.0 359 72.1
Cfa016888 Carpinus fangiana HOM05D006205 ORTHO05D007703 2.0e-147 526.2 303 82.5
Mapoly0096s0035 Marchantia polymorpha HOM05D006205 ORTHO05D007703 4.5e-147 525.0 359 69.1
ECA236G0538 Erigeron canadensis HOM05D006205 ORTHO05D007703 1.5e-145 520.0 313 78.6
MD12G1062300 Malus domestica HOM05D006205 ORTHO05D007703 7.2e-145 517.7 307 80.1
SMO334G0020 Selaginella moellendorffii HOM05D006205 ORTHO05D007703 5.7e-142 508.1 357 68.1
Pp3c3_27370 Physcomitrium patens HOM05D006205 ORTHO05D007703 3.1e-140 502.3 358 66.8
Ah.13g076130 Amaranthus hybridus HOM05D006205 ORTHO05D007703 7.0e-140 501.1 349 71.1
Rhsim04G0098500 Rhododendron simsii HOM05D006205 ORTHO05D007703 1.4e-135 486.9 404 60.9
AagrBONN_evm.TU.Sc2ySwM_228.3151 Anthoceros agrestis HOM05D006205 ORTHO05D007703 2.3e-135 486.1 358 65.4
CsaV3_3G039050 Cucumis sativus L. HOM05D006205 ORTHO05D007703 1.0e-127 460.7 250 86.4
CBR_g25855 Chara braunii HOM05D006205 ORTHO05D007703 1.8e-127 459.9 368 60.6
COL.COLO4_36119 Corchorus olitorius HOM05D006205 ORTHO05D007703 5.2e-127 458.4 241 89.6
Peaxi162Scf00285g00443 Petunia axillaris HOM05D006205 ORTHO05D007703 1.7e-125 453.4 359 63.0
SalBow1G2557 Salvia bowleyana HOM05D006205 ORTHO05D007703 8.6e-122 441.0 371 62.3
CARHR086730 Cardamine hirsuta HOM05D006205 ORTHO05D007703 1.5e-113 413.7 206 96.1
HPP92_023778 Vanilla planifolia HOM05D006205 ORTHO05D007703 4.3e-113 412.1 239 80.8
Dinv18116 Davidia involucrata HOM05D006205 ORTHO05D007703 3.5e-99 365.9 212 79.2
Glyma.02G176500 Glycine max HOM05D006205 ORTHO05D007703 1.1e-76 291.2 180 78.9
MBI04_g47239_MAGBIO Magnolia biondii HOM05D006205 ORTHO05D007703 2.7e-59 233.4 153 68.6
MBI04_g14269_MAGBIO Magnolia biondii HOM05D006205 ORTHO05D007703 1.1e-52 211.5 162 62.3
MD14G1062900 Malus domestica HOM05D006205 ORTHO05D007703 1.5e-49 201.1 127 73.2
Actinidia33641 Actinidia chinensis HOM05D006205 ORTHO05D007703 1.9e-49 200.7 120 74.2
Cre02.g076150 Chlamydomonas reinhardtii HOM05D006205 ORTHO05D007703 1.3e-48 198.0 324 38.6
MD14G1062700 Malus domestica HOM05D006205 ORTHO05D007703 6.9e-47 192.2 204 52.0
VMungo1080G0431 Vigna mungo HOM05D006205 ORTHO05D007703 4.5e-38 162.9 98 80.6
arahy.Tifrunner.gnm1.ann1.EV0IJD Arachis hypogaea HOM05D006205 ORTHO05D007703 2.0e-33 147.5 117 64.1
MD12G1062200 Malus domestica HOM05D006205 ORTHO05D007703 2.3e-26 124.0 56 98.2
VMungo0331G0486 Vigna mungo HOM05D006205 ORTHO05D007703 9.7e-25 118.6 108 57.4
BcaC01g04094 Brassica carinata HOM05D001227 ORTHO05D001082 1.2e-19 101.7 162 42.6
Medtr0001s0010 Medicago truncatula HOM05D006205 ORTHO05D007703 3.6e-19 100.1 79 63.3
Rhsim04G0098400 Rhododendron simsii HOM05D000259 ORTHO05D000155 1.2e-14 85.1 37 97.3
Glyma.02G176400 Glycine max HOM05D006205 ORTHO05D007703 2.3e-13 80.9 51 62.7
MCO07G325 Micromonas commoda HOM05D006205 ORTHO05D007703 9.8e-09 65.5 202 29.7


User provided reference genes

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