Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s1138 Capsella rubella HOM05D007056 ORTHO05D008278 3.0e-145 518.5 253 100.0
AT3G12040 Arabidopsis thaliana HOM05D007056 ORTHO05D008278 3.5e-130 468.4 256 89.8
Sp3g10270 Schrenkiella parvula HOM05D007056 ORTHO05D008278 1.1e-128 463.4 254 89.0
AL3G23650 Arabidopsis lyrata HOM05D007056 ORTHO05D008278 1.5e-128 463.0 255 89.4
A05p37300 Brassica napus HOM05D007056 ORTHO05D008278 1.6e-127 459.5 255 87.8
CARHR086600 Cardamine hirsuta HOM05D007056 ORTHO05D008278 1.6e-127 459.5 253 88.9
BraA05t22526Z Brassica rapa HOM05D007056 ORTHO05D008278 7.6e-125 450.7 255 86.7
Thhalv10021378m.g Eutrema salsugineum HOM05D007056 ORTHO05D008278 3.8e-124 448.4 254 87.8
BcaC05g29295 Brassica carinata HOM05D007056 ORTHO05D008278 9.3e-123 443.7 254 84.6
C05p55770 Brassica napus HOM05D007056 ORTHO05D008278 2.3e-121 439.1 255 84.3
BolC5t34244H Brassica oleracea HOM05D007056 ORTHO05D008278 2.3e-121 439.1 255 84.3
BcaB06g25552 Brassica carinata HOM05D007056 ORTHO05D008278 1.3e-119 433.3 258 84.5
Aa31sc80G100 Aethionema arabicum HOM05D007056 ORTHO05D008278 5.8e-109 397.9 253 77.5
THA.LOC104809936 Tarenaya hassleriana HOM05D007056 ORTHO05D008278 2.4e-102 375.9 262 73.3
Potri.016G060000 Populus trichocarpa HOM05D007056 ORTHO05D008278 2.2e-100 369.4 257 71.2
Glyma.19G149400 Glycine max HOM05D007056 ORTHO05D008278 7.1e-99 364.4 235 76.2
VMungo1383G1827 Vigna mungo HOM05D007056 ORTHO05D008278 2.1e-98 362.8 217 80.2
Lalb_Chr18g0048001 Lupinus albus HOM05D007056 ORTHO05D008278 3.5e-98 362.1 259 70.3
Lj1g0028043 Lotus japonicus HOM05D007056 ORTHO05D008278 1.8e-97 359.8 248 72.6
Sabra16G0062800 Salix brachista HOM05D007056 ORTHO05D008278 3.9e-97 358.6 249 71.1
Atru.chr8.1149 Acer truncatum HOM05D007056 ORTHO05D008278 6.7e-97 357.8 255 69.4
Duzib093G0790 Durio zibethinus HOM05D007056 ORTHO05D008278 6.7e-97 357.8 202 81.7
Actinidia38590 Actinidia chinensis HOM05D007056 ORTHO05D008278 1.9e-96 356.3 199 81.4
arahy.Tifrunner.gnm1.ann1.DK1M71 Arachis hypogaea HOM05D007056 ORTHO05D008278 7.4e-96 354.4 246 69.5
Gorai.012G099400 Gossypium raimondii HOM05D007056 ORTHO05D008278 7.4e-96 354.4 258 68.6
Prupe.7G080200 Prunus persica HOM05D007056 ORTHO05D008278 7.4e-96 354.4 240 71.7
Gohir.D04G089300 Gossypium hirsutum HOM05D007056 ORTHO05D008278 9.7e-96 354.0 258 68.6
Phvul.001G143900 Phaseolus vulgaris HOM05D007056 ORTHO05D008278 9.7e-96 354.0 201 83.1
RcHm_v2.0_Chr3g0479281 Rosa chinensis HOM05D007056 ORTHO05D008278 1.3e-95 353.6 209 78.5
CiPaw.09G028900 Carya illinoinensis HOM05D007056 ORTHO05D008278 1.6e-95 353.2 253 69.6
Ca_08534_v3 Cicer arietinum L. HOM05D007056 ORTHO05D008278 2.1e-95 352.8 249 69.9
QL07p024320 Quercus lobata HOM05D007056 ORTHO05D008278 2.1e-95 352.8 257 68.9
QL07p024358 Quercus lobata HOM05D007056 ORTHO05D008278 2.1e-95 352.8 257 68.9
TWI77G0776 Tripterygium wilfordii HOM05D007056 ORTHO05D008278 2.1e-95 352.8 256 69.1
AUR62011999 Chenopodium quinoa HOM05D007056 ORTHO05D008278 3.7e-95 352.1 254 68.9
SGA_v2.0_scaffold69G23055 Striga asiatica HOM05D007056 ORTHO05D008278 3.7e-95 352.1 245 70.2
arahy.Tifrunner.gnm1.ann1.LTU6F0 Arachis hypogaea HOM05D007056 ORTHO05D008278 6.3e-95 351.3 246 69.5
Lj2A365G87 Lonicera japonica HOM05D007056 ORTHO05D008278 8.2e-95 350.9 199 80.9
Thecc.05G174400 Theobroma cacao HOM05D007056 ORTHO05D008278 1.4e-94 350.1 266 66.9
CSS0008084 Camellia sinensis var. sinensis HOM05D007056 ORTHO05D008278 3.1e-94 349.0 251 67.7
CANSAT64G0992 Cannabis sativa HOM05D007056 ORTHO05D008278 4.1e-94 348.6 202 79.7
Nn2g15729 Nelumbo nucifera HOM05D007056 ORTHO05D008278 4.1e-94 348.6 255 67.1
PGR142G3072 Punica granatum HOM05D007056 ORTHO05D008278 5.3e-94 348.2 198 81.3
EL10Ac3g06891 Beta vulgaris HOM05D007056 ORTHO05D008278 6.9e-94 347.8 230 73.0
Cpa.g.sc85.61 Carica papaya HOM05D007056 ORTHO05D008278 6.9e-94 347.8 258 67.4
Ciclev10012466m.g Citrus clementina HOM05D007056 ORTHO05D008278 9.0e-94 347.4 256 68.0
Dinv16370 Davidia involucrata HOM05D007056 ORTHO05D008278 9.0e-94 347.4 202 78.2
TAR369G0080 Trochodendron aralioides HOM05D007056 ORTHO05D008278 1.5e-93 346.7 257 64.6
Cfa020149 Carpinus fangiana HOM05D007056 ORTHO05D008278 2.6e-93 345.9 260 67.7
AUR62015338 Chenopodium quinoa HOM05D007056 ORTHO05D008278 3.4e-93 345.5 255 68.2
MD14G1054600 Malus domestica HOM05D007056 ORTHO05D008278 4.5e-93 345.1 276 65.6
Aqoxy2G00097 Aquilegia oxysepala HOM05D007056 ORTHO05D008278 1.0e-92 344.0 246 67.9
FAN09G4108 Fragaria x ananassa HOM05D007056 ORTHO05D008278 1.0e-92 344.0 251 68.5
Os02g0774500 Oryza sativa ssp. japonica HOM05D007056 ORTHO05D008278 1.3e-92 343.6 229 72.5
Sopen10g031100 Solanum pennellii HOM05D007056 ORTHO05D008278 1.7e-92 343.2 268 64.9
Zm00001eb256530 Zea mays HOM05D007056 ORTHO05D008278 1.7e-92 343.2 256 68.0
Cc06_g15700 Coffea canephora HOM05D007056 ORTHO05D008278 2.9e-92 342.4 211 74.9
CAN.G128.50 Capsicum annuum HOM05D007056 ORTHO05D008278 8.5e-92 340.9 256 67.6
COL.COLO4_05956 Corchorus olitorius HOM05D007056 ORTHO05D008278 8.5e-92 340.9 213 73.2
CsaV3_3G038650 Cucumis sativus L. HOM05D007056 ORTHO05D008278 8.5e-92 340.9 256 65.6
Medtr7g093540 Medicago truncatula HOM05D007056 ORTHO05D008278 8.5e-92 340.9 249 68.3
HanXRQChr01g0010031 Helianthus annuus HOM05D007056 ORTHO05D008278 1.9e-91 339.7 239 68.6
Solyc10g080560.2 Solanum lycopersicum HOM05D007056 ORTHO05D008278 2.5e-91 339.3 268 64.6
PGSC0003DMG400023706 Solanum tuberosum HOM05D007056 ORTHO05D008278 4.2e-91 338.6 266 64.7
Nitab4.5_0001079g0030 Nicotiana tabacum HOM05D007056 ORTHO05D008278 7.2e-91 337.8 198 79.3
ATR0598G297 Amborella trichopoda HOM05D007056 ORTHO05D008278 9.3e-91 337.4 200 77.5
MBI19_g17420_MAGBIO Magnolia biondii HOM05D007056 ORTHO05D008278 1.2e-90 337.0 243 67.9
Ah.04g152820 Amaranthus hybridus HOM05D007056 ORTHO05D008278 2.1e-90 336.3 242 68.6
Eucgr.K01848 Eucalyptus grandis HOM05D007056 ORTHO05D008278 2.1e-90 336.3 256 65.6
FAN14G2508 Fragaria x ananassa HOM05D007056 ORTHO05D008278 2.7e-90 335.9 255 67.1
Lsat_1_v5_gn_5_165300 Lactuca sativa HOM05D007056 ORTHO05D008278 7.9e-90 334.3 211 74.9
Rhsim04G0094900 Rhododendron simsii HOM05D007056 ORTHO05D008278 6.7e-89 331.3 194 78.4
BcaB06g25551 Brassica carinata HOM05D007056 ORTHO05D008278 1.1e-88 330.5 166 90.4
HPP92_004381 Vanilla planifolia HOM05D007056 ORTHO05D008278 7.4e-88 327.8 236 69.1
DCAR_019779 Daucus carota HOM05D007056 ORTHO05D008278 2.2e-87 326.2 233 67.4
Peaxi162Scf00249g01221 Petunia axillaris HOM05D007056 ORTHO05D008278 2.4e-86 322.8 198 76.8
CDE06G2434 Ceratophyllum demersum HOM05D007056 ORTHO05D008278 1.5e-85 320.1 196 73.5
GSVIVG01033475001 Vitis vinifera HOM05D007056 ORTHO05D008278 4.5e-85 318.5 265 62.3
unitig_27.g25110 Utricularia gibba HOM05D007056 ORTHO05D008278 2.9e-84 315.8 190 76.8
SEGI_25756 Sequoiadendron giganteum HOM05D007056 ORTHO05D008278 6.5e-84 314.7 198 74.2
TPR.G35780 Trifolium pratense HOM05D007056 ORTHO05D008278 6.5e-84 314.7 244 66.4
SMO146G0068 Selaginella moellendorffii HOM05D007056 ORTHO05D008278 4.2e-83 312.0 233 65.2
AagrBONN_evm.TU.Sc2ySwM_344.2853 Anthoceros agrestis HOM05D007056 ORTHO05D008278 3.6e-82 308.9 192 74.0
Mapoly0003s0280 Marchantia polymorpha HOM05D007056 ORTHO05D008278 3.6e-82 308.9 192 72.9
Hund24814 Selenicereus undatus HOM05D007056 ORTHO05D008278 1.0e-81 307.4 264 62.1
Aqoxy3G01855 Aquilegia oxysepala HOM05D007056 ORTHO05D008278 2.0e-77 293.1 248 60.1
ECA248G2501 Erigeron canadensis HOM05D007056 ORTHO05D008278 4.5e-77 292.0 174 78.2
Pp3c1_41490 Physcomitrium patens HOM05D007056 ORTHO05D008278 3.8e-76 288.9 267 56.9
PSO541G5037 Papaver somniferum HOM05D007056 ORTHO05D008278 3.2e-75 285.8 245 61.2
Psat3g067120 Pisum sativum HOM05D007056 ORTHO05D008278 7.2e-75 284.6 167 77.2
PSO675G9168 Papaver somniferum HOM05D007056 ORTHO05D008278 1.2e-74 283.9 245 60.4
CBR_g48019 Chara braunii HOM05D000019 ORTHO05D000002 1.8e-73 280.0 190 68.4
ECA248G2516 Erigeron canadensis HOM05D007056 ORTHO05D008278 2.0e-72 276.6 162 79.0
Oeu024494.3 Olea europaea HOM05D007056 ORTHO05D008278 9.1e-70 267.7 291 53.3
FvH4_6g21980 Fragaria vesca HOM05D007056 ORTHO05D008278 2.6e-69 266.2 203 67.5
vmacro22110 Vaccinium macrocarpon HOM05D007056 ORTHO05D008278 5.9e-69 265.0 327 46.2
Sed0027134 Sechium edule HOM05D007056 ORTHO05D008278 1.7e-68 263.5 210 66.7
Gohir.A04G057300 Gossypium hirsutum HOM05D007056 ORTHO05D008278 2.7e-58 229.6 186 65.6
Psat3g067080 Pisum sativum HOM05D007056 ORTHO05D008278 1.1e-54 217.6 180 63.9
Migut.J01851 Erythranthe guttata HOM05D007056 ORTHO05D008278 3.5e-53 212.6 121 80.2
ECA248G3402 Erigeron canadensis HOM05D000009 ORTHO05D000008 5.5e-51 205.3 122 77.9
ClCG10G017660 Citrullus lanatus HOM05D007056 ORTHO05D008278 2.3e-49 199.9 207 55.1
Psat3g067040 Pisum sativum HOM05D007056 ORTHO05D008278 5.2e-49 198.7 238 51.3
Manes.08G042900 Manihot esculenta HOM05D007056 ORTHO05D008278 2.6e-48 196.4 157 61.8
FAN02G0430 Fragaria x ananassa HOM05D007056 ORTHO05D008278 1.9e-43 180.3 156 60.3
Sc13g0002370 Simmondsia chinensis HOM05D007056 ORTHO05D008278 7.3e-43 178.3 103 78.6
MELO3C009610.2 Cucumis melo HOM05D007056 ORTHO05D008278 1.6e-42 177.2 255 44.3
Haze_20013 Corylus avellana HOM05D007056 ORTHO05D008278 1.7e-39 167.2 480 30.8
Nitab4.5_0001440g0050 Nicotiana tabacum HOM05D007056 ORTHO05D008278 1.9e-35 153.7 97 74.2
PRCOL_00003183 Prasinoderma coloniale HOM05D007056 ORTHO05D008278 3.6e-34 149.4 216 42.6
ECA233G2032 Erigeron canadensis HOM05D007056 ORTHO05D008278 5.0e-28 129.0 78 73.1
Hma1.2p1_0645F.1_g194860 Hydrangea macrophylla HOM05D007056 ORTHO05D008278 1.5e-27 127.5 73 78.1
SHI31778 Sapria himalayana HOM05D007056 ORTHO05D008278 4.3e-27 125.9 76 72.4
vmacro22990 Vaccinium macrocarpon HOM05D007056 ORTHO05D008278 1.7e-15 87.4 96 46.9
SHI31775 Sapria himalayana HOM05D000002 ORTHO05D000001 2.9e-07 60.1 66 48.5


User provided reference genes

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