Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s1109 Capsella rubella HOM05D003887 ORTHO05D004523 2.4e-72 275.4 139 100.0
AL3G23320 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 1.7e-62 242.7 139 89.9
AT3G11750 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 6.1e-60 234.2 136 87.5
Thhalv10021697m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 7.5e-58 227.3 149 77.9
Sp3g09980 Schrenkiella parvula HOM05D003887 ORTHO05D004523 7.0e-56 220.7 147 78.2
BcaB04g21119 Brassica carinata HOM05D003887 ORTHO05D004523 1.3e-54 216.5 123 86.2
BcaC05g29334 Brassica carinata HOM05D003887 ORTHO05D004523 1.1e-53 213.4 145 75.2
BcaB06g25586 Brassica carinata HOM05D003887 ORTHO05D004523 1.9e-53 212.6 150 74.7
C05p56150 Brassica napus HOM05D003887 ORTHO05D004523 3.3e-53 211.8 150 74.0
BcaC09g48199 Brassica carinata HOM05D003887 ORTHO05D004523 7.2e-53 210.7 143 76.2
BolC1t05293H Brassica oleracea HOM05D003887 ORTHO05D004523 7.2e-53 210.7 143 76.2
BraA01t04162Z Brassica rapa HOM05D003887 ORTHO05D004523 7.2e-53 210.7 143 76.2
BraA05t22556Z Brassica rapa HOM05D003887 ORTHO05D004523 7.2e-53 210.7 150 74.0
A05p37580 Brassica napus HOM05D003887 ORTHO05D004523 1.6e-52 209.5 145 74.5
A05p37590 Brassica napus HOM05D003887 ORTHO05D004523 2.1e-52 209.1 146 76.0
BraA05t22557Z Brassica rapa HOM05D003887 ORTHO05D004523 2.1e-52 209.1 146 76.0
Aa31LG3G5210 Aethionema arabicum HOM05D003887 ORTHO05D004523 1.2e-50 203.4 139 75.5
Thhalv10005125m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 2.6e-50 202.2 122 79.5
AT5G62980 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 3.7e-49 198.4 123 78.0
AL8G40010 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 3.2e-48 195.3 123 77.2
CARHR276790 Cardamine hirsuta HOM05D003887 ORTHO05D004523 7.0e-48 194.1 119 80.7
THA.LOC104826798 Tarenaya hassleriana HOM05D003887 ORTHO05D004523 3.5e-47 191.8 119 77.3
Aa31LG3G5230 Aethionema arabicum HOM05D003887 ORTHO05D004523 4.6e-47 191.4 140 71.4
Carub.0008s2369 Capsella rubella HOM05D003887 ORTHO05D004523 4.6e-47 191.4 123 76.4
BcaB02g09713 Brassica carinata HOM05D003887 ORTHO05D004523 1.0e-46 190.3 125 72.8
AL3G35860 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 4.0e-43 178.3 127 63.8
Hund18807 Selenicereus undatus HOM05D003887 ORTHO05D004523 1.4e-40 169.9 121 65.3
TAR265G0002 Trochodendron aralioides HOM05D003887 ORTHO05D004523 2.4e-40 169.1 125 64.8
Atru.chr8.1305 Acer truncatum HOM05D003887 ORTHO05D004523 4.1e-40 168.3 124 63.7
Sc06g0008630 Simmondsia chinensis HOM05D003887 ORTHO05D004523 2.0e-39 166.0 120 64.2
Zm00001eb039720 Zea mays HOM05D003887 ORTHO05D004523 2.7e-39 165.6 121 64.5
FvH4_6g20690 Fragaria vesca HOM05D003887 ORTHO05D004523 4.6e-39 164.9 120 66.7
FAN05G1871 Fragaria x ananassa HOM05D003887 ORTHO05D004523 4.6e-39 164.9 120 66.7
FAN05G1982 Fragaria x ananassa HOM05D003887 ORTHO05D004523 4.6e-39 164.9 120 66.7
FAN14G0913 Fragaria x ananassa HOM05D003887 ORTHO05D004523 4.6e-39 164.9 120 66.7
Glyma.07G068300 Glycine max HOM05D003887 ORTHO05D004523 7.8e-39 164.1 120 65.8
CSS0042801 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 1.0e-38 163.7 125 63.2
Eucgr.G00614 Eucalyptus grandis HOM05D003887 ORTHO05D004523 1.3e-38 163.3 128 62.5
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 1.3e-38 163.3 124 62.9
MD14G1042300 Malus domestica HOM05D003887 ORTHO05D004523 1.3e-38 163.3 120 63.3
CANSAT64G2672 Cannabis sativa HOM05D003887 ORTHO05D004523 1.7e-38 162.9 122 68.0
MD12G1043200 Malus domestica HOM05D003887 ORTHO05D004523 1.7e-38 162.9 120 62.5
Nn1g06263 Nelumbo nucifera HOM05D003887 ORTHO05D004523 1.7e-38 162.9 125 61.6
RcHm_v2.0_Chr3g0476591 Rosa chinensis HOM05D003887 ORTHO05D004523 2.3e-38 162.5 120 65.8
Prupe.7G091600 Prunus persica HOM05D003887 ORTHO05D004523 3.0e-38 162.2 120 63.3
Zm00001eb039830 Zea mays HOM05D003887 ORTHO05D004523 3.0e-38 162.2 120 64.2
EL10Ac7g16270 Beta vulgaris HOM05D003887 ORTHO05D004523 5.0e-38 161.4 124 60.5
Ah.08g222240 Amaranthus hybridus HOM05D003887 ORTHO05D004523 6.6e-38 161.0 120 61.7
Hma1.2p1_0969F.1_g242620 Hydrangea macrophylla HOM05D003887 ORTHO05D004523 6.6e-38 161.0 122 62.3
MSTRG.10420 Avicennia marina HOM05D003887 ORTHO05D004523 8.6e-38 160.6 125 60.0
Ciclev10013089m.g Citrus clementina HOM05D003887 ORTHO05D004523 8.6e-38 160.6 124 62.1
Psat5g004600 Pisum sativum HOM05D003887 ORTHO05D004523 8.6e-38 160.6 125 64.0
Potri.016G067200 Populus trichocarpa HOM05D003887 ORTHO05D004523 8.6e-38 160.6 120 64.2
FAN02G3629 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.1e-37 160.2 120 65.0
FAN09G3131 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.1e-37 160.2 120 65.0
Duzib106G1345 Durio zibethinus HOM05D003887 ORTHO05D004523 1.5e-37 159.8 120 64.2
Os09g0560500 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 1.5e-37 159.8 129 59.7
PGSC0003DMG400029847 Solanum tuberosum HOM05D003887 ORTHO05D004523 1.5e-37 159.8 120 63.3
Medtr7g106580 Medicago truncatula HOM05D003887 ORTHO05D004523 2.5e-37 159.1 120 63.3
Sabra16G0068500 Salix brachista HOM05D003887 ORTHO05D004523 2.5e-37 159.1 118 64.4
Haze_20135 Corylus avellana HOM05D003887 ORTHO05D004523 3.3e-37 158.7 120 63.3
Lalb_Chr20g0111271 Lupinus albus HOM05D003887 ORTHO05D004523 3.3e-37 158.7 122 63.9
Nitab4.5_0008674g0010 Nicotiana tabacum HOM05D003887 ORTHO05D004523 3.3e-37 158.7 120 63.3
PGR142G0321 Punica granatum HOM05D003887 ORTHO05D004523 3.3e-37 158.7 120 65.0
Cc06_g06820 Coffea canephora HOM05D003887 ORTHO05D004523 4.3e-37 158.3 122 62.3
Nn5g28552 Nelumbo nucifera HOM05D003887 ORTHO05D004523 4.3e-37 158.3 124 60.5
PSO513G0097 Papaver somniferum HOM05D003887 ORTHO05D004523 4.3e-37 158.3 122 61.5
Gohir.A01G135300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 5.6e-37 157.9 120 63.3
PSO339G1162 Papaver somniferum HOM05D003887 ORTHO05D004523 5.6e-37 157.9 120 60.8
TWI18G1123 Tripterygium wilfordii HOM05D003887 ORTHO05D004523 5.6e-37 157.9 124 62.9
CAN.G1237.27 Capsicum annuum HOM05D003887 ORTHO05D004523 7.3e-37 157.5 120 63.3
Cpa.g.sc104.4 Carica papaya HOM05D003887 ORTHO05D004523 7.3e-37 157.5 120 62.5
vmacro07505 Vaccinium macrocarpon HOM05D003887 ORTHO05D004523 7.3e-37 157.5 129 58.9
Glyma.03G203800 Glycine max HOM05D003887 ORTHO05D004523 9.5e-37 157.1 120 61.7
Gorai.002G153400 Gossypium raimondii HOM05D003887 ORTHO05D004523 9.5e-37 157.1 120 63.3
Thecc.05G108100 Theobroma cacao HOM05D003887 ORTHO05D004523 9.5e-37 157.1 135 58.5
Os08g0556200 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 1.2e-36 156.8 121 59.5
Psat3g027720 Pisum sativum HOM05D001091 ORTHO05D004523 1.2e-36 156.8 120 63.3
Sc06g0010620 Simmondsia chinensis HOM05D003887 ORTHO05D004523 1.6e-36 156.4 118 61.9
Solyc10g079830.3 Solanum lycopersicum HOM05D003887 ORTHO05D004523 1.6e-36 156.4 120 60.8
GSVIVG01028462001 Vitis vinifera HOM05D003887 ORTHO05D004523 1.6e-36 156.4 124 61.3
Lj3C240T1 Lonicera japonica HOM05D003887 ORTHO05D004523 2.1e-36 156.0 120 61.7
QL07p027116 Quercus lobata HOM05D003887 ORTHO05D004523 2.1e-36 156.0 120 61.7
Sopen10g030440 Solanum pennellii HOM05D003887 ORTHO05D004523 2.1e-36 156.0 120 60.8
MBI07_g23221_MAGBIO Magnolia biondii HOM05D003887 ORTHO05D004523 2.8e-36 155.6 120 62.5
Medtr2g088720 Medicago truncatula HOM05D003887 ORTHO05D004523 2.8e-36 155.6 120 62.5
Phvul.001G197300 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 2.8e-36 155.6 120 63.3
CiPaw.09G022700 Carya illinoinensis HOM05D003887 ORTHO05D004523 3.6e-36 155.2 120 62.5
Manes.08G035800 Manihot esculenta HOM05D003887 ORTHO05D004523 3.6e-36 155.2 124 58.1
MSTRG.26582 Avicennia marina HOM05D003887 ORTHO05D004523 4.7e-36 154.8 120 60.0
PSO513G0196 Papaver somniferum HOM05D003887 ORTHO05D004523 4.7e-36 154.8 120 58.3
TAR633G0863 Trochodendron aralioides HOM05D003887 ORTHO05D004523 4.7e-36 154.8 130 59.2
PSO339G2059 Papaver somniferum HOM05D003887 ORTHO05D004523 6.2e-36 154.5 122 59.8
Peaxi162Scf00130g01133 Petunia axillaris HOM05D003887 ORTHO05D004523 6.2e-36 154.5 120 60.8
Glyma.16G034300 Glycine max HOM05D003887 ORTHO05D004523 8.1e-36 154.1 120 62.5
Gohir.D01G122500 Gossypium hirsutum HOM05D003887 ORTHO05D004523 8.1e-36 154.1 120 62.5
Lj1g0007196 Lotus japonicus HOM05D003887 ORTHO05D004523 8.1e-36 154.1 122 59.8
CDE02G3355 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 1.4e-35 153.3 125 58.4
AUR62020206 Chenopodium quinoa HOM05D003887 ORTHO05D004523 1.4e-35 153.3 120 63.3
COL.COLO4_29521 Corchorus olitorius HOM05D003887 ORTHO05D004523 1.4e-35 153.3 121 61.2
Phvul.001G204200 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 1.4e-35 153.3 120 62.5
Rhsim03G0059700 Rhododendron simsii HOM05D003887 ORTHO05D004523 1.4e-35 153.3 142 55.6
SHI28303 Sapria himalayana HOM05D003887 ORTHO05D004523 1.4e-35 153.3 120 59.2
Os06g0154600 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 2.3e-35 152.5 129 57.4
QL02p078458 Quercus lobata HOM05D003887 ORTHO05D004523 2.3e-35 152.5 120 61.7
QL10p000363 Quercus lobata HOM05D003887 ORTHO05D004523 2.3e-35 152.5 120 61.7
SEGI_09372 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 3.1e-35 152.1 118 60.2
VMungo1383G2471 Vigna mungo HOM05D003887 ORTHO05D004523 3.1e-35 152.1 120 61.7
Aqoxy2G02430 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 5.2e-35 151.4 121 59.5
Duzib128G1521 Durio zibethinus HOM05D003887 ORTHO05D004523 5.2e-35 151.4 120 61.7
PSO782G0206 Papaver somniferum HOM05D003887 ORTHO05D004523 5.2e-35 151.4 122 58.2
Ca_09068_v3 Cicer arietinum L. HOM05D003887 ORTHO05D004523 6.8e-35 151.0 120 62.5
Medtr7g106600 Medicago truncatula HOM05D003887 ORTHO05D004523 6.8e-35 151.0 120 62.5
Aqoxy1G00605 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 1.5e-34 149.8 121 58.7
Gohir.D04G154300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 2.0e-34 149.4 120 60.8
Gorai.012G141600 Gossypium raimondii HOM05D003887 ORTHO05D004523 2.0e-34 149.4 120 60.8
unitig_899.g14853 Utricularia gibba HOM05D003887 ORTHO05D004523 2.0e-34 149.4 120 59.2
CAN.G1656.10 Capsicum annuum HOM05D003887 ORTHO05D004523 2.6e-34 149.1 120 58.3
arahy.Tifrunner.gnm1.ann1.Z0QHZD Arachis hypogaea HOM05D003887 ORTHO05D004523 3.4e-34 148.7 122 57.4
Migut.L01853 Erythranthe guttata HOM05D003887 ORTHO05D004523 3.4e-34 148.7 124 55.6
PSO210G2693 Papaver somniferum HOM05D003887 ORTHO05D004523 3.4e-34 148.7 123 56.1
VMungo1215G2564 Vigna mungo HOM05D003887 ORTHO05D004523 3.4e-34 148.7 120 60.8
Cc06_g20890 Coffea canephora HOM05D003887 ORTHO05D004523 4.4e-34 148.3 124 58.9
DCAR_020685 Daucus carota HOM05D003887 ORTHO05D004523 5.8e-34 147.9 120 60.0
TPR.G25788 Trifolium pratense HOM05D003887 ORTHO05D004523 5.8e-34 147.9 119 60.5
ATR0730G208 Amborella trichopoda HOM05D003887 ORTHO05D004523 7.5e-34 147.5 120 59.2
Gohir.A04G113000 Gossypium hirsutum HOM05D003887 ORTHO05D004523 9.8e-34 147.1 120 61.7
ATR0730G166 Amborella trichopoda HOM05D003887 ORTHO05D004523 1.7e-33 146.4 120 59.2
SEGI_12007 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 6.4e-33 144.4 118 57.6
SGA_v2.0_scaffold392G50674 Striga asiatica HOM05D003887 ORTHO05D004523 8.3e-33 144.1 121 60.3
CDE09G0948 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 4.1e-32 141.7 108 61.1
AagrBONN_evm.TU.Sc2ySwM_117.2540 Anthoceros agrestis HOM05D003887 ORTHO05D004523 5.4e-32 141.4 120 55.8
ECA233G2913 Erigeron canadensis HOM05D003887 ORTHO05D004523 1.2e-31 140.2 121 55.4
Lsat_1_v5_gn_6_34741 Lactuca sativa HOM05D003887 ORTHO05D004523 1.2e-31 140.2 120 55.8
Lj6g0023596 Lotus japonicus HOM05D003887 ORTHO05D004523 1.6e-31 139.8 119 56.3
Sed0005545 Sechium edule HOM05D003887 ORTHO05D004523 2.1e-31 139.4 120 55.0
ClCG04G001280 Citrullus lanatus HOM05D003887 ORTHO05D004523 3.5e-31 138.7 120 55.0
SMO351G0485 Selaginella moellendorffii HOM05D003887 ORTHO05D004523 6.0e-31 137.9 119 55.5
CsaV3_4G004540 Cucumis sativus L. HOM05D003887 ORTHO05D004523 7.8e-31 137.5 120 53.3
Actinidia03866 Actinidia chinensis HOM05D003887 ORTHO05D004523 1.0e-30 137.1 116 56.9
AUR62042906 Chenopodium quinoa HOM05D003887 ORTHO05D004523 5.1e-30 134.8 114 57.9
MELO3C019050.2 Cucumis melo HOM05D003887 ORTHO05D004523 5.1e-30 134.8 119 52.9
Actinidia03974 Actinidia chinensis HOM05D003887 ORTHO05D004523 1.1e-29 133.7 97 62.9
Lj6g0002536 Lotus japonicus HOM05D003887 ORTHO05D004523 1.9e-29 132.9 119 55.5
Glyma.19G201200 Glycine max HOM05D003887 ORTHO05D004523 4.3e-29 131.7 121 57.9
Gohir.A04G112940 Gossypium hirsutum HOM05D003887 ORTHO05D004523 5.6e-29 131.3 104 62.5
Oeu020172.1 Olea europaea HOM05D003887 ORTHO05D004523 2.8e-28 129.0 122 53.3
HanXRQChr13g0398651 Helianthus annuus HOM05D003887 ORTHO05D004523 3.6e-28 128.6 110 56.4
SalBow7G3037 Salvia bowleyana HOM05D003887 ORTHO05D004523 1.4e-27 126.7 123 52.8
Lj6g0002343 Lotus japonicus HOM05D003887 ORTHO05D004523 2.3e-27 125.9 122 50.8
Pp3c1_42850 Physcomitrium patens HOM05D003887 ORTHO05D004523 1.5e-26 123.2 117 50.4
arahy.Tifrunner.gnm1.ann1.K0K91E Arachis hypogaea HOM05D003887 ORTHO05D004523 1.3e-25 120.2 122 50.8
Nitab4.5_0000677g0080 Nicotiana tabacum HOM05D003887 ORTHO05D004523 3.7e-25 118.6 109 54.1
Mapoly0109s0052 Marchantia polymorpha HOM05D003887 ORTHO05D004523 1.4e-24 116.7 124 46.8
HanXRQChr01g0028311 Helianthus annuus HOM05D003887 ORTHO05D004523 7.1e-24 114.4 110 52.7
ECA232G3477 Erigeron canadensis HOM05D003887 ORTHO05D004523 2.1e-23 112.8 100 52.0
DCAR_009071 Daucus carota HOM05D003887 ORTHO05D004523 6.0e-23 111.3 136 47.8
HPP92_016697 Vanilla planifolia HOM05D003887 ORTHO05D004523 8.1e-20 100.9 82 59.8
Aa31LG3G5240 Aethionema arabicum HOM05D003887 ORTHO05D004523 7.6e-18 94.4 66 71.2
Actinidia06188 Actinidia chinensis HOM05D003887 ORTHO05D004523 3.8e-17 92.0 61 65.6
Cre02.g097450 Chlamydomonas reinhardtii HOM05D003887 ORTHO05D004523 4.2e-16 88.6 112 37.5
Zm00001eb027530 Zea mays HOM05D011105 ORTHO05D007705 3.5e-15 85.5 54 66.7
AT3G21730 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 7.8e-15 84.3 65 58.5
Mapoly0121s0041 Marchantia polymorpha HOM05D003887 ORTHO05D004523 7.8e-15 84.3 95 46.3
PGSC0003DMG400007623 Solanum tuberosum HOM05D003887 ORTHO05D004523 2.3e-14 82.8 57 64.9
CSS0033244 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 4.3e-13 78.6 70 55.7
Gohir.D09G062150 Gossypium hirsutum HOM05D003887 ORTHO05D004523 3.6e-12 75.5 54 61.1
Rhsim03G0060000 Rhododendron simsii HOM05D003887 ORTHO05D004523 6.2e-12 74.7 64 56.2
Rhsim03G0060200 Rhododendron simsii HOM05D003887 ORTHO05D004523 6.2e-12 74.7 64 56.2
Gorai.006G076900 Gossypium raimondii HOM05D003887 ORTHO05D004523 4.0e-11 72.0 50 62.0
Mapoly0003s0213 Marchantia polymorpha HOM05D003887 ORTHO05D004523 1.2e-10 70.5 119 34.5
arahy.Tifrunner.gnm1.ann1.3PGZ0K Arachis hypogaea HOM05D003887 ORTHO05D004523 3.8e-09 65.5 62 58.1
arahy.Tifrunner.gnm1.ann1.97GEQU Arachis hypogaea HOM05D003887 ORTHO05D004523 8.4e-09 64.3 62 56.5
arahy.Tifrunner.gnm1.ann1.T8NVRB Arachis hypogaea HOM05D003887 ORTHO05D004523 1.1e-08 63.9 62 54.8
Nitab4.5_0000936g0150 Nicotiana tabacum HOM05D003887 ORTHO05D004523 3.2e-08 62.4 80 46.2
CARHR086300 Cardamine hirsuta HOM05D003887 ORTHO05D004523 2.1e-07 59.7 56 57.1
Lj3A241T19 Lonicera japonica HOM05D003887 ORTHO05D004523 2.1e-07 59.7 61 50.8


User provided reference genes

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