Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s1033 Capsella rubella HOM05D004070 ORTHO05D004904 0.0e+00 1461.4 711 100.0
AT3G11040 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 0.0e+00 1306.6 711 88.3
CARHR085620 Cardamine hirsuta HOM05D004070 ORTHO05D004904 0.0e+00 1254.6 713 84.6
AL3G22590 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 0.0e+00 1230.7 675 88.7
BcaB04g21158 Brassica carinata HOM05D004070 ORTHO05D004904 0.0e+00 1210.3 711 83.1
Thhalv10020200m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 0.0e+00 1209.9 678 85.0
BolC1t05338H Brassica oleracea HOM05D004070 ORTHO05D004904 0.0e+00 1206.4 728 81.2
Sp3g09370 Schrenkiella parvula HOM05D004070 ORTHO05D004904 0.0e+00 1195.3 679 84.4
AL467U10010 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 0.0e+00 1115.9 675 82.4
BcaC09g48150 Brassica carinata HOM05D004070 ORTHO05D004904 0.0e+00 1092.8 711 76.7
Aa31LG3G4060 Aethionema arabicum HOM05D004070 ORTHO05D004904 0.0e+00 1087.8 677 76.5
Sp6g37380 Schrenkiella parvula HOM05D004070 ORTHO05D004904 3.9e-304 1047.7 694 73.1
CARHR207790 Cardamine hirsuta HOM05D004070 ORTHO05D004904 3.1e-301 1038.1 677 73.6
AT5G05460 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 1.7e-299 1032.3 662 74.5
Thhalv10012879m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 3.2e-298 1028.1 665 74.0
AL6G15350 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 4.2e-298 1027.7 678 72.7
Carub.0006s0436 Capsella rubella HOM05D004070 ORTHO05D004904 5.2e-296 1020.8 679 72.5
BcaB01g05761 Brassica carinata HOM05D004070 ORTHO05D004904 1.2e-289 999.6 665 71.7
BcaB01g05950 Brassica carinata HOM05D004070 ORTHO05D004904 7.5e-287 990.3 664 71.4
BolC3t12817H Brassica oleracea HOM05D004070 ORTHO05D004904 7.5e-287 990.3 664 71.4
A03p02310 Brassica napus HOM05D004070 ORTHO05D004904 1.7e-286 989.2 664 71.1
C03p02630 Brassica napus HOM05D004070 ORTHO05D004904 2.2e-286 988.8 695 69.2
BraA03t09594Z Brassica rapa HOM05D004070 ORTHO05D004904 6.3e-286 987.3 665 71.9
THA.LOC104816686 Tarenaya hassleriana HOM05D004070 ORTHO05D004904 4.1e-285 984.6 726 66.7
Aa31LG11G6530 Aethionema arabicum HOM05D004070 ORTHO05D004904 1.3e-270 936.4 667 67.3
Ciclev10030777m.g Citrus clementina HOM05D004070 ORTHO05D004904 1.2e-231 807.0 728 54.9
Dinv10587 Davidia involucrata HOM05D004070 ORTHO05D004904 1.3e-230 803.5 730 54.0
Gorai.012G079500 Gossypium raimondii HOM05D004070 ORTHO05D004904 6.4e-230 801.2 734 53.8
Potri.010G184300 Populus trichocarpa HOM05D004070 ORTHO05D004904 1.1e-226 790.4 728 54.8
MD07G1226700 Malus domestica HOM05D004070 ORTHO05D004904 5.6e-226 788.1 722 54.8
Duzib128G0764 Durio zibethinus HOM05D004070 ORTHO05D004904 4.8e-225 785.0 680 55.4
QL08p063798 Quercus lobata HOM05D004070 ORTHO05D004904 6.2e-225 784.6 690 55.4
Manes.10G008700 Manihot esculenta HOM05D004070 ORTHO05D004904 1.1e-224 783.9 724 53.7
Prupe.2G256300 Prunus persica HOM05D004070 ORTHO05D004904 1.8e-224 783.1 731 54.3
TWI73G0078 Tripterygium wilfordii HOM05D004070 ORTHO05D004904 6.9e-224 781.2 726 53.7
Potri.010G184200 Populus trichocarpa HOM05D004070 ORTHO05D004904 1.5e-223 780.0 669 56.2
FvH4_7g25120 Fragaria vesca HOM05D004070 ORTHO05D004904 4.5e-223 778.5 724 53.9
Thecc.10G010900 Theobroma cacao HOM05D004070 ORTHO05D004904 9.9e-223 777.3 717 53.7
MD01G1158000 Malus domestica HOM05D004070 ORTHO05D004904 1.3e-222 776.9 723 53.8
Lalb_Chr08g0231511 Lupinus albus HOM05D004070 ORTHO05D004904 2.2e-222 776.2 715 54.0
FAN03G3092 Fragaria x ananassa HOM05D004070 ORTHO05D004904 8.4e-222 774.2 736 53.4
Rhsim03G0147100 Rhododendron simsii HOM05D004070 ORTHO05D004904 1.4e-221 773.5 713 53.2
Sabra10G0141400 Salix brachista HOM05D004070 ORTHO05D004904 1.9e-221 773.1 706 54.1
Gohir.A10G238300 Gossypium hirsutum HOM05D004070 ORTHO05D004904 5.4e-221 771.5 663 55.2
RcHm_v2.0_Chr1g0370971 Rosa chinensis HOM05D004070 ORTHO05D004904 5.4e-221 771.5 727 53.4
TAR623G0471 Trochodendron aralioides HOM05D004070 ORTHO05D004904 9.3e-221 770.8 743 52.8
FAN01G1500 Fragaria x ananassa HOM05D004070 ORTHO05D004904 3.9e-219 765.4 748 52.7
Gorai.011G290600 Gossypium raimondii HOM05D004070 ORTHO05D004904 2.5e-218 762.7 652 55.5
Nitab4.5_0000058g0090 Nicotiana tabacum HOM05D004070 ORTHO05D004904 1.6e-217 760.0 726 51.4
Gohir.D10G250200 Gossypium hirsutum HOM05D004070 ORTHO05D004904 3.7e-217 758.8 653 55.6
Nitab4.5_0003710g0040 Nicotiana tabacum HOM05D004070 ORTHO05D004904 4.8e-217 758.4 739 51.2
vmacro06948 Vaccinium macrocarpon HOM05D004070 ORTHO05D004904 1.1e-216 757.3 770 50.1
Glyma.11G232700 Glycine max HOM05D004070 ORTHO05D004904 1.4e-216 756.9 706 53.4
CiPaw.02G195800 Carya illinoinensis HOM05D004070 ORTHO05D004904 3.1e-216 755.7 722 53.2
Lj1A961T78 Lonicera japonica HOM05D004070 ORTHO05D004904 3.1e-216 755.7 733 51.2
Eucgr.J00174 Eucalyptus grandis HOM05D004070 ORTHO05D004904 9.0e-216 754.2 688 53.6
Glyma.18G024300 Glycine max HOM05D004070 ORTHO05D004904 9.0e-216 754.2 705 53.3
Psat5g130680 Pisum sativum HOM05D004070 ORTHO05D004904 1.5e-215 753.4 709 52.6
Solyc06g050930.3 Solanum lycopersicum HOM05D004070 ORTHO05D004904 1.5e-215 753.4 734 51.6
FAN06G4674 Fragaria x ananassa HOM05D004070 ORTHO05D004904 2.0e-215 753.1 764 51.0
Lsat_1_v5_gn_2_125521 Lactuca sativa HOM05D004070 ORTHO05D004904 2.6e-215 752.7 722 52.2
Aqoxy1G01303 Aquilegia oxysepala HOM05D004070 ORTHO05D004904 4.5e-215 751.9 732 51.2
DCAR_011846 Daucus carota HOM05D004070 ORTHO05D004904 4.5e-215 751.9 730 51.5
PSO349G0044 Papaver somniferum HOM05D004070 ORTHO05D004904 7.6e-215 751.1 748 50.0
PSO765G0033 Papaver somniferum HOM05D004070 ORTHO05D004904 7.6e-215 751.1 749 50.6
Peaxi162Scf00284g00526 Petunia axillaris HOM05D004070 ORTHO05D004904 7.6e-215 751.1 714 51.7
Sopen06g016660 Solanum pennellii HOM05D004070 ORTHO05D004904 1.3e-214 750.4 734 51.6
CANSAT56G1738 Cannabis sativa HOM05D004070 ORTHO05D004904 8.4e-214 747.7 720 51.9
Lj6g0014816 Lotus japonicus HOM05D004070 ORTHO05D004904 1.1e-213 747.3 720 52.1
CAN.G19.7 Capsicum annuum HOM05D004070 ORTHO05D004904 1.4e-213 746.9 731 51.3
HanXRQChr17g0536301 Helianthus annuus HOM05D004070 ORTHO05D004904 4.2e-213 745.3 723 51.0
TPR.G27736 Trifolium pratense HOM05D004070 ORTHO05D004904 7.1e-213 744.6 659 54.8
Atru.chr12.102 Acer truncatum HOM05D004070 ORTHO05D004904 3.9e-211 738.8 649 54.5
Medtr3g071610 Medicago truncatula HOM05D004070 ORTHO05D004904 3.9e-211 738.8 717 50.8
Phvul.001G245900 Phaseolus vulgaris HOM05D004070 ORTHO05D004904 6.7e-211 738.0 730 49.6
CiPaw.12G018900 Carya illinoinensis HOM05D004070 ORTHO05D004904 8.7e-211 737.6 688 53.3
AUR62022946 Chenopodium quinoa HOM05D004070 ORTHO05D004904 1.1e-210 737.3 713 52.5
EL10Ac2g04896 Beta vulgaris HOM05D004070 ORTHO05D004904 3.3e-210 735.7 719 50.3
PGR044G0681 Punica granatum HOM05D004070 ORTHO05D004904 4.3e-210 735.3 718 51.3
Oeu043174.1 Olea europaea HOM05D004070 ORTHO05D004904 9.6e-210 734.2 719 50.5
ECA238G2061 Erigeron canadensis HOM05D004070 ORTHO05D004904 3.7e-209 732.3 685 52.8
Migut.F00635 Erythranthe guttata HOM05D004070 ORTHO05D004904 3.7e-209 732.3 711 51.9
VMungo1383G0354 Vigna mungo HOM05D004070 ORTHO05D004904 4.8e-209 731.9 716 50.4
Ca_15154_v3 Cicer arietinum L. HOM05D004070 ORTHO05D004904 8.2e-209 731.1 684 52.8
Glyma.14G056500 Glycine max HOM05D004070 ORTHO05D004904 1.5e-207 726.9 676 52.4
Glyma.14G056600 Glycine max HOM05D004070 ORTHO05D004904 5.8e-207 724.9 664 53.2
Haze_17281 Corylus avellana HOM05D004070 ORTHO05D004904 1.7e-206 723.4 713 51.8
AUR62012305 Chenopodium quinoa HOM05D004070 ORTHO05D004904 2.2e-206 723.0 713 51.6
SGA_v2.0_scaffold60G20962 Striga asiatica HOM05D004070 ORTHO05D004904 8.4e-206 721.1 703 51.2
Glyma.02G262300 Glycine max HOM05D004070 ORTHO05D004904 2.5e-205 719.5 666 52.7
Rhsim03G0146900 Rhododendron simsii HOM05D004070 ORTHO05D004904 3.2e-205 719.2 700 51.6
MSTRG.8925 Avicennia marina HOM05D004070 ORTHO05D004904 4.2e-205 718.8 687 51.7
SalBow3G2100 Salvia bowleyana HOM05D004070 ORTHO05D004904 1.0e-203 714.1 703 50.4
SalBow3G0248 Salvia bowleyana HOM05D004070 ORTHO05D004904 1.8e-203 713.4 703 50.5
Gohir.A05G332000 Gossypium hirsutum HOM05D004070 ORTHO05D004904 5.1e-203 711.8 628 54.8
Lj8A62T48 Lonicera japonica HOM05D004070 ORTHO05D004904 6.7e-203 711.4 612 55.6
Sabra10G0141500 Salix brachista HOM05D004070 ORTHO05D004904 1.3e-201 707.2 892 44.5
Duzib106G0498 Durio zibethinus HOM05D004070 ORTHO05D004904 3.7e-201 705.7 721 49.9
Haze_17272 Corylus avellana HOM05D004070 ORTHO05D004904 2.4e-200 703.0 713 50.5
VMungo0647G1128 Vigna mungo HOM05D004070 ORTHO05D004904 6.9e-200 701.4 677 50.4
ATR0174G011 Amborella trichopoda HOM05D004070 ORTHO05D004904 1.0e-198 697.6 741 49.3
Ciclev10031026m.g Citrus clementina HOM05D004070 ORTHO05D004904 3.2e-197 692.6 616 54.4
Migut.F01473 Erythranthe guttata HOM05D004070 ORTHO05D004904 1.0e-195 687.6 684 49.9
BraA01t04204Z Brassica rapa HOM05D004070 ORTHO05D004904 3.7e-193 679.1 444 77.0
Gohir.D04G070700 Gossypium hirsutum HOM05D004070 ORTHO05D004904 1.8e-192 676.8 735 47.9
Sed0002479 Sechium edule HOM05D004070 ORTHO05D004904 7.7e-191 671.4 677 49.9
CsaV3_5G010500 Cucumis sativus L. HOM05D004070 ORTHO05D004904 3.8e-190 669.1 703 48.1
ClCG07G004560 Citrullus lanatus HOM05D004070 ORTHO05D004904 4.2e-189 665.6 697 48.9
arahy.Tifrunner.gnm1.ann1.T4ULTV Arachis hypogaea HOM05D004070 ORTHO05D004904 9.4e-189 664.5 668 49.9
GSVIVG01032751001 Vitis vinifera HOM05D004070 ORTHO05D004904 1.2e-188 664.1 597 54.1
CsaV3_5G010510 Cucumis sativus L. HOM05D004070 ORTHO05D004904 2.7e-188 662.9 683 48.8
CDE06G0669 Ceratophyllum demersum HOM05D004070 ORTHO05D004904 7.9e-188 661.4 642 52.0
SEGI_36115 Sequoiadendron giganteum HOM05D004070 ORTHO05D004904 3.9e-187 659.1 763 44.7
arahy.Tifrunner.gnm1.ann1.L3EDXB Arachis hypogaea HOM05D004070 ORTHO05D004904 9.7e-186 654.4 668 49.3
ClCG07G004550 Citrullus lanatus HOM05D004070 ORTHO05D004904 2.2e-185 653.3 700 47.7
Cc02_g06030 Coffea canephora HOM05D004070 ORTHO05D004904 1.8e-184 650.2 596 53.5
arahy.Tifrunner.gnm1.ann1.PDR9Z8 Arachis hypogaea HOM05D004070 ORTHO05D004904 3.1e-184 649.4 737 46.8
Nn2g10988 Nelumbo nucifera HOM05D004070 ORTHO05D004904 9.1e-184 647.9 683 48.2
Os05g0346500 Oryza sativa ssp. japonica HOM05D004070 ORTHO05D004904 2.0e-183 646.7 683 47.6
arahy.Tifrunner.gnm1.ann1.DADU25 Arachis hypogaea HOM05D004070 ORTHO05D004904 5.9e-183 645.2 776 44.8
Ah.16g103890 Amaranthus hybridus HOM05D004070 ORTHO05D004904 4.4e-178 629.0 661 49.5
CANSAT56G2024 Cannabis sativa HOM05D004070 ORTHO05D004904 1.5e-173 614.0 682 47.8
FAN10G1680 Fragaria x ananassa HOM05D004070 ORTHO05D004904 2.1e-172 610.1 672 48.2
PGR142G0892 Punica granatum HOM05D004070 ORTHO05D004904 1.0e-171 607.8 663 48.7
BcaC09g48154 Brassica carinata HOM05D004070 ORTHO05D004904 1.7e-169 600.5 339 83.2
MELO3C018385.2 Cucumis melo HOM05D004070 ORTHO05D004904 3.1e-160 569.7 739 42.8
MELO3C018386.2 Cucumis melo HOM05D004070 ORTHO05D004904 3.8e-158 562.8 690 43.6
HPP92_006774 Vanilla planifolia HOM05D004070 ORTHO05D004904 5.6e-157 558.9 678 44.4
COL.COLO4_25787 Corchorus olitorius HOM05D004070 ORTHO05D004904 7.5e-154 548.5 697 43.9
CSS0045603 Camellia sinensis var. sinensis HOM05D004070 ORTHO05D004904 1.7e-153 547.4 535 50.8
unitig_32.g11775 Utricularia gibba HOM05D004070 ORTHO05D004904 5.9e-151 538.9 683 43.3
Sc11g0005320 Simmondsia chinensis HOM05D004070 ORTHO05D004904 2.8e-148 530.0 532 49.4
SMO351G0021 Selaginella moellendorffii HOM05D004070 ORTHO05D004904 2.8e-140 503.4 426 54.0
Manes.10G008500 Manihot esculenta HOM05D004070 ORTHO05D004904 6.2e-140 502.3 554 46.2
Zm00001eb347620 Zea mays HOM05D004070 ORTHO05D004904 5.6e-133 479.2 547 46.4
AT3G61010 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 1.4e-123 448.0 367 65.9
Cpa.g.sc19.130 Carica papaya HOM05D004070 ORTHO05D004904 4.0e-123 446.4 386 56.0
PSO478G2175 Papaver somniferum HOM05D004070 ORTHO05D004904 1.6e-108 397.9 289 63.0
CBR_g6382 Chara braunii HOM05D004070 ORTHO05D004904 5.1e-102 376.3 463 41.9
BraA01t04205Z Brassica rapa HOM05D004070 ORTHO05D004904 3.8e-97 360.1 209 84.2
Dinv21779 Davidia involucrata HOM05D004070 ORTHO05D004904 1.2e-95 355.1 231 70.1
BraA01t04203Z Brassica rapa HOM05D000053 ORTHO05D000035 7.4e-93 345.9 234 76.5
Pp3c4_19160 Physcomitrium patens HOM05D004070 ORTHO05D004904 3.7e-92 343.6 568 34.9
Cre13.g582250 Chlamydomonas reinhardtii HOM05D004070 ORTHO05D004904 3.8e-89 333.6 314 49.0
BolC1t05337H Brassica oleracea HOM05D000053 ORTHO05D000035 3.0e-86 323.9 237 73.0
AagrBONN_evm.TU.Sc2ySwM_362.570 Anthoceros agrestis HOM05D004070 ORTHO05D004904 1.5e-82 311.6 552 34.6
SGA_v2.0_scaffold395G50725 Striga asiatica HOM05D004070 ORTHO05D004904 1.7e-81 308.1 400 41.5
Glyma.02G262251 Glycine max HOM05D004070 ORTHO05D004904 2.2e-81 307.8 401 40.9
Mapoly0073s0082 Marchantia polymorpha HOM05D004070 ORTHO05D004904 4.4e-77 293.5 571 32.9
BcaB07g33013 Brassica carinata HOM05D004070 ORTHO05D004904 1.0e-57 229.2 223 56.1
Glyma.02G262200 Glycine max HOM05D004070 ORTHO05D004904 9.4e-56 222.6 155 67.1
PGSC0003DMG400023947 Solanum tuberosum HOM05D004070 ORTHO05D004904 2.6e-53 214.5 331 37.8
SGA_v2.0_scaffold395G50724 Striga asiatica HOM05D004070 ORTHO05D004904 1.6e-50 205.3 137 67.2
Potri.008G073001 Populus trichocarpa HOM05D004070 ORTHO05D004904 5.9e-50 203.4 219 48.9
BcaB04g21152 Brassica carinata HOM05D004070 ORTHO05D004904 4.5e-42 177.2 99 81.8
BcaB04g21155 Brassica carinata HOM05D004070 ORTHO05D004904 4.5e-42 177.2 99 81.8
BcaB04g21156 Brassica carinata HOM05D004070 ORTHO05D004904 4.5e-42 177.2 99 81.8
SGA_v2.0_scaffold395G50723 Striga asiatica HOM05D004070 ORTHO05D004904 1.0e-38 166.0 115 61.7
MELO3C034437.2 Cucumis melo HOM05D004070 ORTHO05D004904 4.0e-38 164.1 117 60.7
Cpa.g.sc19.132 Carica papaya HOM05D004070 ORTHO05D004904 4.1e-35 154.1 243 36.2
arahy.Tifrunner.gnm1.ann1.0XTL3F Arachis hypogaea HOM05D004070 ORTHO05D004904 2.7e-26 124.8 134 45.5
Sopen01g021300 Solanum pennellii HOM05D004070 ORTHO05D004904 4.3e-24 117.5 209 32.5
Atru.chr12.101 Acer truncatum HOM05D004070 ORTHO05D004904 2.3e-22 111.7 185 36.2
BcaB03g16457 Brassica carinata HOM05D004070 ORTHO05D032257 1.2e-21 109.4 59 84.7
Dinv21778 Davidia involucrata HOM05D004070 ORTHO05D004904 9.8e-21 106.3 269 29.7
BcaC06g31359 Brassica carinata HOM05D004070 ORTHO05D000295 2.1e-18 98.6 64 78.1
arahy.Tifrunner.gnm1.ann1.N2R911 Arachis hypogaea HOM05D004070 ORTHO05D004904 2.1e-15 88.6 77 50.6
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 3.6e-15 87.8 45 86.7
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 3.6e-15 87.8 45 86.7
Sabra08G0054200 Salix brachista HOM05D004070 ORTHO05D004904 1.8e-14 85.5 224 28.1
BraA01t04202Z Brassica rapa HOM05D004070 ORTHO05D107995 5.1e-09 67.4 46 71.7
Potri.008G072901 Populus trichocarpa HOM05D004070 ORTHO05D004904 2.4e-06 58.5 141 29.1


User provided reference genes

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