Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s0996 Capsella rubella HOM05D003737 ORTHO05D004640 6.4e-247 857.1 458 100.0
Thhalv10020697m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 1.7e-215 752.7 461 86.6
AL3G22200 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 7.8e-213 743.8 458 85.8
AL532U10020 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 6.6e-212 740.7 458 85.4
AT3G10730 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 2.8e-210 735.3 458 84.7
CARHR085310 Cardamine hirsuta HOM05D003737 ORTHO05D004640 3.4e-208 728.4 461 84.2
BraA05t22639Z Brassica rapa HOM05D003737 ORTHO05D004640 4.6e-189 664.8 462 76.6
Sp3g09060 Schrenkiella parvula HOM05D003737 ORTHO05D004640 1.8e-188 662.9 461 76.6
BolC5t34394H Brassica oleracea HOM05D003737 ORTHO05D004640 1.3e-186 656.8 460 76.3
C05p57390 Brassica napus HOM05D005327 ORTHO05D006655 1.0e-183 647.1 458 75.8
A05p38490 Brassica napus HOM05D005327 ORTHO05D006655 8.5e-183 644.0 457 75.3
Aa31LG3G3660 Aethionema arabicum HOM05D003737 ORTHO05D004640 7.4e-179 630.9 463 73.7
Thhalv10013430m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 1.8e-164 583.2 464 68.8
Sp6g37810 Schrenkiella parvula HOM05D003737 ORTHO05D004640 7.7e-160 567.8 451 67.8
CARHR208270 Cardamine hirsuta HOM05D003737 ORTHO05D004640 1.2e-157 560.5 464 67.2
AL6G14700 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 6.1e-157 558.1 465 66.0
C09p71760 Brassica napus HOM05D003737 ORTHO05D004081 5.7e-155 551.6 462 65.6
AT5G04990 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 1.4e-153 547.0 460 65.4
BolC9t59927H Brassica oleracea HOM05D003737 ORTHO05D004081 2.4e-153 546.2 462 64.9
Carub.0006s0393 Capsella rubella HOM05D003737 ORTHO05D004640 2.4e-153 546.2 460 65.2
BraA10t45159Z Brassica rapa HOM05D003737 ORTHO05D004081 1.9e-150 536.6 462 64.5
A10p31150 Brassica napus HOM05D003737 ORTHO05D004081 4.2e-150 535.4 462 64.5
Aa31LG11G5690 Aethionema arabicum HOM05D003737 ORTHO05D004640 2.1e-149 533.1 458 64.0
BcaB05g21740 Brassica carinata HOM05D003737 ORTHO05D004640 7.5e-139 498.0 463 62.0
THA.LOC104823158 Tarenaya hassleriana HOM05D003737 ORTHO05D004640 4.6e-128 462.2 461 58.6
BcaC06g32213 Brassica carinata HOM05D003737 ORTHO05D004640 4.0e-124 449.1 420 63.6
Manes.05G191000 Manihot esculenta HOM05D003737 ORTHO05D004640 3.7e-122 442.6 483 55.5
Cpa.g.sc33.135 Carica papaya HOM05D003737 ORTHO05D004640 1.4e-116 424.1 469 54.4
Prupe.2G056900 Prunus persica HOM05D003737 ORTHO05D004640 5.2e-116 422.2 473 52.2
Thecc.10G131100 Theobroma cacao HOM05D003737 ORTHO05D004640 1.3e-114 417.5 469 50.7
Gohir.D04G017900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 4.9e-114 415.6 473 50.3
Duzib106G0442 Durio zibethinus HOM05D003737 ORTHO05D004640 1.4e-113 414.1 476 50.4
Gorai.012G020700 Gossypium raimondii HOM05D003737 ORTHO05D004640 1.4e-113 414.1 473 50.1
TWI32G0890 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 1.9e-113 413.7 473 51.8
Duzib128G0945 Durio zibethinus HOM05D003737 ORTHO05D004640 5.4e-113 412.1 477 51.4
Gohir.A06G171900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 2.1e-112 410.2 477 50.5
CiPaw.13G048500 Carya illinoinensis HOM05D003737 ORTHO05D004640 6.0e-112 408.7 473 50.5
Gohir.D06G180700 Gossypium hirsutum HOM05D003737 ORTHO05D004640 6.0e-112 408.7 479 50.3
Gorai.010G212200 Gossypium raimondii HOM05D003737 ORTHO05D004640 1.0e-111 407.9 477 49.9
TWI34G0525 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 1.7e-111 407.1 473 51.8
MD07G1053000 Malus domestica HOM05D003737 ORTHO05D004640 3.9e-111 406.0 466 51.1
Atru.chr12.1119 Acer truncatum HOM05D003737 ORTHO05D004640 1.2e-109 401.0 471 50.7
MD02G1266700 Malus domestica HOM05D003737 ORTHO05D004640 2.1e-109 400.2 468 50.4
Gohir.A05G398100 Gossypium hirsutum HOM05D003737 ORTHO05D004640 3.6e-109 399.4 469 49.7
Actinidia12270 Actinidia chinensis HOM05D003737 ORTHO05D004640 8.1e-109 398.3 478 49.8
COL.COLO4_05028 Corchorus olitorius HOM05D003737 ORTHO05D004640 8.1e-109 398.3 475 47.8
Actinidia31420 Actinidia chinensis HOM05D003737 ORTHO05D004640 2.4e-108 396.7 474 49.4
Cfa010430 Carpinus fangiana HOM05D003737 ORTHO05D004640 4.4e-107 392.5 475 49.5
ClCG08G008580 Citrullus lanatus HOM05D003737 ORTHO05D004640 2.9e-106 389.8 483 48.7
RcHm_v2.0_Chr1g0330551 Rosa chinensis HOM05D003737 ORTHO05D004640 2.9e-106 389.8 466 48.7
CiPaw.14G038200 Carya illinoinensis HOM05D003737 ORTHO05D004640 4.9e-106 389.0 468 49.8
Dinv20457 Davidia involucrata HOM05D003737 ORTHO05D004640 8.4e-106 388.3 477 48.2
Sc09g0004980 Simmondsia chinensis HOM05D003737 ORTHO05D004640 8.4e-106 388.3 485 48.5
CSS0038854 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 2.4e-105 386.7 472 48.5
CSS0046027 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 2.4e-105 386.7 472 48.5
Eucgr.J00319 Eucalyptus grandis HOM05D003737 ORTHO05D004640 2.4e-105 386.7 462 50.4
Phvul.011G188500 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 1.2e-104 384.4 471 49.9
QL04p051647 Quercus lobata HOM05D003737 ORTHO05D004640 3.5e-104 382.9 470 48.3
CsaV3_6G004570 Cucumis sativus L. HOM05D003737 ORTHO05D004640 4.6e-104 382.5 484 49.2
Hma1.2p1_0233F.1_g098040 Hydrangea macrophylla HOM05D003737 ORTHO05D004640 4.6e-104 382.5 469 49.3
CANSAT78G1307 Cannabis sativa HOM05D003737 ORTHO05D004640 6.0e-104 382.1 472 48.3
MELO3C019928.2 Cucumis melo HOM05D003737 ORTHO05D004640 7.8e-104 381.7 483 48.0
Sed0006452 Sechium edule HOM05D003737 ORTHO05D004640 1.3e-103 380.9 481 48.4
Lj9C660G5 Lonicera japonica HOM05D003737 ORTHO05D004640 2.3e-103 380.2 478 48.3
TAR633G0465 Trochodendron aralioides HOM05D003737 ORTHO05D004640 2.3e-103 380.2 483 48.0
VMungo0647G1094 Vigna mungo HOM05D003737 ORTHO05D004640 6.6e-103 378.6 474 49.8
Glyma.13G185300 Glycine max HOM05D003737 ORTHO05D004640 3.3e-102 376.3 470 48.7
FvH4_7g04870 Fragaria vesca HOM05D003737 ORTHO05D004640 7.3e-102 375.2 466 47.2
Psat4g141920 Pisum sativum HOM05D003737 ORTHO05D004640 7.3e-102 375.2 472 47.9
Sabra08G0006600 Salix brachista HOM05D003737 ORTHO05D004640 7.3e-102 375.2 468 46.8
PGR044G1985 Punica granatum HOM05D003737 ORTHO05D004640 9.6e-102 374.8 472 47.9
Medtr8g043510 Medicago truncatula HOM05D003737 ORTHO05D004640 1.2e-101 374.4 477 47.8
Potri.010G247900 Populus trichocarpa HOM05D003737 ORTHO05D004640 1.2e-101 374.4 473 47.6
BcaC06g32214 Brassica carinata HOM05D003737 ORTHO05D004640 3.6e-101 372.9 339 62.5
FAN06G1525 Fragaria x ananassa HOM05D003737 ORTHO05D004640 3.6e-101 372.9 466 46.8
FAN10G1609 Fragaria x ananassa HOM05D003737 ORTHO05D004640 4.7e-101 372.5 466 47.6
CANSAT56G0630 Cannabis sativa HOM05D003737 ORTHO05D004640 1.1e-100 371.3 472 48.3
Lalb_Chr01g0007591 Lupinus albus HOM05D003737 ORTHO05D004640 3.1e-100 369.8 479 46.8
Glyma.15G223100 Glycine max HOM05D003737 ORTHO05D004640 4.0e-100 369.4 474 48.1
Sed0018433 Sechium edule HOM05D003737 ORTHO05D004640 6.9e-100 368.6 472 46.8
Sabra10G0193400 Salix brachista HOM05D003737 ORTHO05D004640 1.5e-99 367.5 471 46.7
Rhsim07G0072700 Rhododendron simsii HOM05D003737 ORTHO05D004640 3.4e-99 366.3 461 48.2
TAR636G0393 Trochodendron aralioides HOM05D003737 ORTHO05D004640 4.4e-99 365.9 484 46.9
Lj3g0019804 Lotus japonicus HOM05D003737 ORTHO05D004640 1.7e-98 364.0 468 48.5
Potri.008G010900 Populus trichocarpa HOM05D003737 ORTHO05D004640 6.4e-98 362.1 472 44.9
RcHm_v2.0_Chr1g0324281 Rosa chinensis HOM05D003737 ORTHO05D004640 2.1e-96 357.1 466 46.8
Lalb_Chr03g0032471 Lupinus albus HOM05D003737 ORTHO05D004640 1.3e-95 354.4 479 45.3
vmacro13791 Vaccinium macrocarpon HOM05D003737 ORTHO05D004640 3.9e-95 352.8 521 42.8
Oeu013042.2 Olea europaea HOM05D003737 ORTHO05D004640 6.6e-95 352.1 513 41.5
Hund06832 Selenicereus undatus HOM05D003737 ORTHO05D004640 1.9e-94 350.5 507 44.2
AUR62041279 Chenopodium quinoa HOM05D003737 ORTHO05D004640 9.6e-94 348.2 479 44.5
TWI63G1132 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 1.6e-93 347.4 435 49.2
Peaxi162Scf00220g00010 Petunia axillaris HOM05D003737 ORTHO05D004640 1.8e-92 344.0 470 45.5
Haze_03384 Corylus avellana HOM05D003737 ORTHO05D004640 4.0e-92 342.8 600 38.8
Duzib128G0026 Durio zibethinus HOM05D003737 ORTHO05D004640 2.0e-91 340.5 378 50.5
EL10Ac4g08805 Beta vulgaris HOM05D003737 ORTHO05D004640 2.6e-91 340.1 472 42.8
PGSC0003DMG402027528 Solanum tuberosum HOM05D003737 ORTHO05D004640 7.6e-91 338.6 471 45.6
MBI19_g24737_MAGBIO Magnolia biondii HOM05D003737 ORTHO05D004640 5.4e-89 332.4 487 44.4
arahy.Tifrunner.gnm1.ann1.J916II Arachis hypogaea HOM05D003737 ORTHO05D004640 1.2e-88 331.3 469 44.6
Sopen01g040480 Solanum pennellii HOM05D003737 ORTHO05D004640 1.2e-88 331.3 471 44.2
Solyc01g096780.4 Solanum lycopersicum HOM05D003737 ORTHO05D004640 1.6e-88 330.9 471 44.2
arahy.Tifrunner.gnm1.ann1.3J71J7 Arachis hypogaea HOM05D003737 ORTHO05D004640 3.5e-88 329.7 469 44.6
Nitab4.5_0004903g0010 Nicotiana tabacum HOM05D003737 ORTHO05D004640 3.5e-88 329.7 474 42.8
Nitab4.5_0002687g0030 Nicotiana tabacum HOM05D003737 ORTHO05D004640 1.0e-87 328.2 469 43.5
MSTRG.20485 Avicennia marina HOM05D003737 ORTHO05D004640 3.9e-87 326.2 367 49.3
PSO170G6472 Papaver somniferum HOM05D003737 ORTHO05D004640 5.1e-87 325.9 384 47.7
Aqoxy2G00024 Aquilegia oxysepala HOM05D003737 ORTHO05D004640 1.9e-86 323.9 494 43.1
PSO782G4010 Papaver somniferum HOM05D003737 ORTHO05D004640 1.9e-86 323.9 384 47.4
TPR.G25035 Trifolium pratense HOM05D003737 ORTHO05D004640 2.5e-86 323.6 348 51.1
PSO675G8349 Papaver somniferum HOM05D003737 ORTHO05D004640 3.3e-86 323.2 486 42.0
DCAR_003288 Daucus carota HOM05D003737 ORTHO05D004640 9.0e-84 315.1 467 43.3
SHI21216 Sapria himalayana HOM05D003737 ORTHO05D004640 7.6e-83 312.0 496 41.1
PSO017G3614 Papaver somniferum HOM05D003737 ORTHO05D004640 9.9e-83 311.6 468 42.1
PSO170G3077 Papaver somniferum HOM05D003737 ORTHO05D004640 1.7e-82 310.8 469 42.4
CAN.G134.41 Capsicum annuum HOM05D003737 ORTHO05D004640 2.9e-82 310.1 304 55.9
HPP92_021189 Vanilla planifolia HOM05D003737 ORTHO05D004640 5.5e-81 305.8 374 46.5
SGA_v2.0_scaffold309G48158 Striga asiatica HOM05D003737 ORTHO05D004640 9.3e-81 305.1 468 42.5
HanXRQChr03g0073711 Helianthus annuus HOM05D003737 ORTHO05D004640 1.6e-80 304.3 460 42.0
ECA240G2259 Erigeron canadensis HOM05D003737 ORTHO05D004640 6.0e-80 302.4 455 40.9
ATR0307G049 Amborella trichopoda HOM05D003737 ORTHO05D004640 7.9e-80 302.0 478 40.8
Migut.B01171 Erythranthe guttata HOM05D003737 ORTHO05D004640 1.3e-79 301.2 465 41.9
CANSAT78G0409 Cannabis sativa HOM05D003737 ORTHO05D004640 5.1e-79 299.3 278 55.0
CDE09G1399 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 5.6e-78 295.8 434 44.2
SGA_v2.0_scaffold182G39819 Striga asiatica HOM05D003737 ORTHO05D004640 1.3e-77 294.7 467 42.0
Ah.04g162720 Amaranthus hybridus HOM05D000296 ORTHO05D000175 2.4e-76 290.4 531 37.5
HanXRQChr09g0247521 Helianthus annuus HOM05D003737 ORTHO05D004640 1.7e-74 284.3 459 40.7
Os05g0270200 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 1.7e-74 284.3 366 45.6
BolC1t05361H Brassica oleracea HOM05D003737 ORTHO05D004640 3.8e-74 283.1 272 59.6
unitig_749.g13793 Utricularia gibba HOM05D003737 ORTHO05D004640 3.2e-73 280.0 361 45.2
Zm00001eb233650 Zea mays HOM05D003737 ORTHO05D004640 3.0e-71 273.5 312 46.5
Ciclev10001582m.g Citrus clementina HOM05D003737 ORTHO05D004640 2.0e-67 260.8 375 44.8
unitig_22.g5336 Utricularia gibba HOM05D003737 ORTHO05D004640 1.0e-66 258.5 361 42.9
Os01g0267600 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 3.8e-66 256.5 365 41.1
ECA236G2275 Erigeron canadensis HOM05D003737 ORTHO05D004640 8.5e-66 255.4 298 47.7
FAN03G1506 Fragaria x ananassa HOM05D003737 ORTHO05D004640 4.2e-65 253.1 448 38.4
vmacro23127 Vaccinium macrocarpon HOM05D003737 ORTHO05D002937 6.1e-64 249.2 362 42.0
Zm00001eb128110 Zea mays HOM05D003737 ORTHO05D004640 1.8e-63 247.7 368 41.0
SEGI_05544 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 2.3e-63 247.3 311 44.4
Lsat_1_v5_gn_1_105000 Lactuca sativa HOM05D003737 ORTHO05D004640 8.8e-63 245.4 356 40.4
Ca_24114_v3 Cicer arietinum L. HOM05D003737 ORTHO05D004640 1.5e-62 244.6 383 44.1
DCAR_022276 Daucus carota HOM05D003737 ORTHO05D004640 3.3e-62 243.4 244 52.9
DCAR_022277 Daucus carota HOM05D003737 ORTHO05D004640 5.7e-62 242.7 208 59.1
Mapoly0147s0033 Marchantia polymorpha HOM05D003737 ORTHO05D004640 5.3e-60 236.1 315 42.5
SMO266G0096 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 9.1e-60 235.3 311 42.4
SMO104G0002 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 1.5e-59 234.6 311 42.4
Lsat_1_v5_gn_1_105040 Lactuca sativa HOM05D003737 ORTHO05D004640 2.0e-59 234.2 354 39.8
Lsat_1_v5_gn_7_65181 Lactuca sativa HOM05D003737 ORTHO05D004640 4.5e-59 233.0 369 40.7
CDE08G0077 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 5.9e-59 232.6 350 43.4
Nn6g33270 Nelumbo nucifera HOM05D003737 ORTHO05D004640 1.4e-55 221.5 382 40.1
SMO356G0438 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 7.4e-54 215.7 302 42.1
Pp3c7_4170 Physcomitrium patens HOM05D003737 ORTHO05D004640 4.1e-52 209.9 368 38.3
SMO119G0482 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 2.6e-51 207.2 286 40.6
GSVIVG01001935001 Vitis vinifera HOM05D003737 ORTHO05D004640 1.4e-49 201.4 139 71.9
Pp3c11_22530 Physcomitrium patens HOM05D003737 ORTHO05D004640 1.9e-49 201.1 464 33.4
PGR083G2251 Punica granatum HOM05D003737 ORTHO05D004640 3.9e-47 193.4 313 41.2
RcHm_v2.0_Chr2g0101681 Rosa chinensis HOM05D003737 ORTHO05D004640 5.2e-47 193.0 191 52.4
AagrBONN_evm.TU.Sc2ySwM_344.2065 Anthoceros agrestis HOM05D003737 ORTHO05D004640 7.4e-46 189.1 321 38.0
DCAR_014025 Daucus carota HOM05D003737 ORTHO05D004640 9.7e-46 188.7 253 45.5
Lsat_1_v5_gn_4_103680 Lactuca sativa HOM05D003737 ORTHO05D004640 2.4e-44 184.1 221 47.1
QL93p0223_0017 Quercus lobata HOM05D003737 ORTHO05D004640 1.6e-43 181.4 372 36.8
SEGI_23640 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 2.2e-42 177.6 204 44.6
HPP92_012444 Vanilla planifolia HOM05D003737 ORTHO05D004640 3.8e-42 176.8 275 40.4
unitig_26.g9749 Utricularia gibba HOM05D003737 ORTHO05D004640 4.2e-41 173.3 310 36.5
RcHm_v2.0_Chr2g0101131 Rosa chinensis HOM05D003737 ORTHO05D004640 2.9e-34 150.6 133 55.6
Thhalv10015457m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 3.8e-34 150.2 85 90.6
Ciclev10003487m.g Citrus clementina HOM05D003737 ORTHO05D004640 1.0e-31 142.1 97 72.2
FvH4_1g13360 Fragaria vesca HOM05D003737 ORTHO05D004640 4.0e-31 140.2 208 39.4
SGA_v2.0_scaffold195G40842 Striga asiatica HOM05D003737 ORTHO05D004640 8.3e-29 132.5 162 45.7
C08p01570 Brassica napus HOM05D003737 ORTHO05D004640 6.6e-26 122.9 71 76.1
FAN23G2857 Fragaria x ananassa HOM05D003737 ORTHO05D004640 4.7e-24 116.7 169 40.2
AUR62034111 Chenopodium quinoa HOM05D003737 ORTHO05D004640 8.9e-23 112.5 103 56.3
PRCOL_00004494 Prasinoderma coloniale HOM05D003737 ORTHO05D004640 2.0e-22 111.3 188 39.4
Phvul.007G106800 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 2.4e-20 104.4 82 62.2
Cfa015121 Carpinus fangiana HOM05D003737 ORTHO05D004640 1.2e-19 102.1 70 67.1
MCO09G802 Micromonas commoda HOM05D003737 ORTHO05D004640 2.7e-19 100.9 195 35.9
BcaC07g36872 Brassica carinata HOM05D003737 ORTHO05D004640 1.4e-12 78.6 212 29.7
Atru.chr12.1692 Acer truncatum HOM05D003737 ORTHO05D004640 3.2e-12 77.4 63 60.3
CAN.G481.43 Capsicum annuum HOM05D000879 ORTHO05D002043 3.6e-08 63.9 52 57.7
Haze_10688 Corylus avellana HOM05D003737 ORTHO05D004640 4.0e-07 60.5 132 34.1
BcaB01g00036 Brassica carinata HOM05D003737 ORTHO05D095156 1.2e-06 58.9 78 50.0
BcaC01g00775 Brassica carinata HOM05D056010 ORTHO05D039557 2.6e-06 57.8 52 61.5


User provided reference genes

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