Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s0991 Capsella rubella HOM05D010059 ORTHO05D011752 9.3e-231 803.5 511 100.0
AT3G10680 Arabidopsis thaliana HOM05D010059 ORTHO05D011752 4.3e-151 538.9 538 67.8
AL3G22150 Arabidopsis lyrata HOM05D010059 ORTHO05D011752 9.8e-148 527.7 537 65.4
CARHR085260 Cardamine hirsuta HOM05D010059 ORTHO05D011752 3.0e-128 463.0 517 60.9
Thhalv10020532m.g Eutrema salsugineum HOM05D010059 ORTHO05D011752 2.0e-100 370.5 565 50.4
C05p57400 Brassica napus HOM05D010059 ORTHO05D011752 4.1e-93 346.3 559 46.3
BolC5t34396H Brassica oleracea HOM05D010059 ORTHO05D011752 4.1e-93 346.3 559 46.3
BcaC05g29438 Brassica carinata HOM05D010059 ORTHO05D011752 5.9e-92 342.4 550 45.8
BraA05t22641Z Brassica rapa HOM05D010059 ORTHO05D011752 6.5e-91 339.0 562 45.4
Sp3g09000 Schrenkiella parvula HOM05D010059 ORTHO05D011752 1.1e-90 338.2 532 47.9
A05p38500 Brassica napus HOM05D010059 ORTHO05D011752 1.0e-88 331.6 562 45.0
BraA01t04230Z Brassica rapa HOM05D010059 ORTHO05D011752 2.5e-82 310.5 520 47.7
BcaB04g21185 Brassica carinata HOM05D010059 ORTHO05D011752 6.1e-81 305.8 694 42.1
BolC1t05368H Brassica oleracea HOM05D010059 ORTHO05D011752 3.3e-71 273.5 515 46.8
A01p41550 Brassica napus HOM05D010059 ORTHO05D011752 4.0e-64 250.0 511 43.4
THA.LOC104816481 Tarenaya hassleriana HOM05D010059 ORTHO05D011752 4.9e-38 163.3 238 47.1
Aa31LG3G3540 Aethionema arabicum HOM05D010059 ORTHO05D011752 3.5e-20 104.0 176 44.3
BcaB04g21184 Brassica carinata HOM05D010059 ORTHO05D011752 3.0e-19 100.9 176 45.5
Sabra08G0008700 Salix brachista HOM05D010059 ORTHO05D011752 9.9e-15 85.9 223 31.4
Potri.008G014000 Populus trichocarpa HOM05D027296 ORTHO05D037401 7.8e-12 76.3 226 29.2
Thecc.10G122500 Theobroma cacao HOM05D014341 ORTHO05D011752 6.6e-11 73.2 204 28.4
Gohir.A05G395900 Gossypium hirsutum HOM05D014341 ORTHO05D011752 4.3e-10 70.5 105 27.6
Gohir.D05G286700 Gossypium hirsutum HOM05D014341 ORTHO05D011752 9.6e-10 69.3 174 28.2
Gorai.009G301700 Gossypium raimondii HOM05D014341 ORTHO05D011752 9.6e-10 69.3 174 28.2
Duzib114G0679 Durio zibethinus HOM05D014341 ORTHO05D011752 1.3e-09 68.9 104 33.7
Gohir.A03G163700 Gossypium hirsutum HOM05D010059 ORTHO05D000666 1.3e-09 68.9 87 36.8
Gohir.D02G187100 Gossypium hirsutum HOM05D010059 ORTHO05D000666 1.6e-09 68.6 87 35.6
Gorai.005G209500 Gossypium raimondii HOM05D010059 ORTHO05D000666 1.6e-09 68.6 87 35.6
AL6G14570 Arabidopsis lyrata HOM05D000881 ORTHO05D000666 4.8e-09 67.0 81 33.3
Glyma.04G130100 Glycine max HOM05D000881 ORTHO05D000666 6.2e-09 66.6 106 32.1
Glyma.06G316200 Glycine max HOM05D000881 ORTHO05D000666 6.2e-09 66.6 241 26.6
Aqoxy3G03278 Aquilegia oxysepala HOM05D000881 ORTHO05D000666 1.1e-08 65.9 121 31.4
BcaC06g32196 Brassica carinata HOM05D000881 ORTHO05D000666 1.1e-08 65.9 81 33.3
RcHm_v2.0_Chr1g0331581 Rosa chinensis HOM05D000881 ORTHO05D000666 1.1e-08 65.9 220 25.0
A03p01910 Brassica napus HOM05D000881 ORTHO05D000666 1.4e-08 65.5 79 34.2
BraA03t09561Z Brassica rapa HOM05D000881 ORTHO05D000666 1.4e-08 65.5 79 34.2
Carub.0006s0381 Capsella rubella HOM05D000881 ORTHO05D000666 1.4e-08 65.5 79 32.9
Gorai.012G022900 Gossypium raimondii HOM05D014341 ORTHO05D011752 1.4e-08 65.5 145 23.4
CARHR208380 Cardamine hirsuta HOM05D000881 ORTHO05D000080 1.8e-08 65.1 79 34.2
FAN06G2536 Fragaria x ananassa HOM05D000881 ORTHO05D000666 1.8e-08 65.1 195 27.2
Gohir.A05G285600 Gossypium hirsutum HOM05D014341 ORTHO05D011752 1.8e-08 65.1 218 28.9
BcaB01g05921 Brassica carinata HOM05D000881 ORTHO05D000666 2.4e-08 64.7 79 34.2
C03p02280 Brassica napus HOM05D000881 ORTHO05D000666 2.4e-08 64.7 79 34.2
Thhalv10014066m.g Eutrema salsugineum HOM05D000881 ORTHO05D000666 2.4e-08 64.7 79 32.9
SalBow6G6574 Salvia bowleyana HOM05D000125 ORTHO05D000120 3.1e-08 64.3 81 33.3
Cfa010462 Carpinus fangiana HOM05D045047 ORTHO05D000666 4.0e-08 63.9 221 24.9
AT5G04890 Arabidopsis thaliana HOM05D000881 ORTHO05D000666 5.3e-08 63.5 81 30.9
BcaNung05155 Brassica carinata HOM05D000881 ORTHO05D000666 5.3e-08 63.5 79 34.2
A10p31250 Brassica napus HOM05D000881 ORTHO05D000666 5.3e-08 63.5 81 32.1
A10p31260 Brassica napus HOM05D000881 ORTHO05D000666 6.9e-08 63.2 82 34.1
C09p71870 Brassica napus HOM05D000881 ORTHO05D000666 6.9e-08 63.2 81 32.1
BraA10t45169Z Brassica rapa HOM05D000881 ORTHO05D000666 6.9e-08 63.2 82 34.1
HanXRQChr11g0326381 Helianthus annuus HOM05D000881 ORTHO05D000666 6.9e-08 63.2 108 33.3
HanXRQChr16g0516881 Helianthus annuus HOM05D000881 ORTHO05D000666 6.9e-08 63.2 84 34.5
QL04p049792 Quercus lobata HOM05D000881 ORTHO05D000666 6.9e-08 63.2 146 28.8
VMungo0647G1281 Vigna mungo HOM05D000881 ORTHO05D000666 9.0e-08 62.8 104 30.8
Actinidia21135 Actinidia chinensis HOM05D001769 ORTHO05D001695 1.2e-07 62.4 97 30.9
Ciclev10018348m.g Citrus clementina HOM05D000881 ORTHO05D000666 1.2e-07 62.4 247 27.9
MBI11_g07703_MAGBIO Magnolia biondii HOM05D000881 ORTHO05D000666 1.2e-07 62.4 96 32.3
MD02G1259500 Malus domestica HOM05D000881 ORTHO05D000666 1.2e-07 62.4 233 26.6
Aa31LG11G5820 Aethionema arabicum HOM05D000881 ORTHO05D000666 1.5e-07 62.0 197 25.4
C09p71880 Brassica napus HOM05D000881 ORTHO05D000666 1.5e-07 62.0 81 33.3
TWI38G1417 Tripterygium wilfordii HOM05D000881 ORTHO05D000666 2.0e-07 61.6 100 34.0
Duzib132G0066 Durio zibethinus HOM05D000881 ORTHO05D000666 2.6e-07 61.2 221 24.0
THA.LOC104816480 Tarenaya hassleriana HOM05D000881 ORTHO05D000666 2.6e-07 61.2 136 31.6
CiPaw.14G037000 Carya illinoinensis HOM05D000881 ORTHO05D000666 4.5e-07 60.5 226 28.8
Sp6g37930 Schrenkiella parvula HOM05D000881 ORTHO05D000666 4.5e-07 60.5 79 30.4
Migut.N01922 Erythranthe guttata HOM05D000881 ORTHO05D000666 5.8e-07 60.1 98 30.6
Gohir.D04G019100 Gossypium hirsutum HOM05D014341 ORTHO05D011752 5.8e-07 60.1 87 28.7
Lsat_1_v5_gn_1_87140 Lactuca sativa HOM05D000881 ORTHO05D000666 7.6e-07 59.7 161 28.6
Medtr3g007660 Medicago truncatula HOM05D000881 ORTHO05D000666 7.6e-07 59.7 238 26.1
Prupe.2G065600 Prunus persica HOM05D000881 ORTHO05D000666 7.6e-07 59.7 220 25.0
SalBow6G4118 Salvia bowleyana HOM05D000881 ORTHO05D000666 7.6e-07 59.7 87 34.5
TPR.G144 Trifolium pratense HOM05D000881 ORTHO05D000666 7.6e-07 59.7 257 25.3
FAN03G3143 Fragaria x ananassa HOM05D000881 ORTHO05D000666 9.9e-07 59.3 219 24.7
AUR62034145 Chenopodium quinoa HOM05D000881 ORTHO05D000666 1.3e-06 58.9 160 28.8
Cc00_g20150 Coffea canephora HOM05D000881 ORTHO05D000666 1.3e-06 58.9 109 33.0
Migut.D00720 Erythranthe guttata HOM05D000881 ORTHO05D000666 1.3e-06 58.9 95 28.4
Psat5g229840 Pisum sativum HOM05D000881 ORTHO05D000666 1.3e-06 58.9 246 27.2
SalBow4G2822 Salvia bowleyana HOM05D000881 ORTHO05D000666 1.3e-06 58.9 120 29.2
unitig_0.g2304 Utricularia gibba HOM05D000881 ORTHO05D000080 1.3e-06 58.9 98 30.6
Actinidia17465 Actinidia chinensis HOM05D038880 ORTHO05D000666 1.7e-06 58.5 170 27.1
BolC2t06177H Brassica oleracea HOM05D010059 ORTHO05D000666 1.7e-06 58.5 170 25.9
MD07G1061100 Malus domestica HOM05D000881 ORTHO05D000666 1.7e-06 58.5 86 30.2
GSVIVG01001930001 Vitis vinifera HOM05D000881 ORTHO05D000666 1.7e-06 58.5 174 24.1
Medtr8g046245 Medicago truncatula HOM05D000881 ORTHO05D000666 2.2e-06 58.2 190 24.2
BcaC03g13137 Brassica carinata HOM05D000881 ORTHO05D000666 2.9e-06 57.8 170 25.9
C02p02100 Brassica napus HOM05D000881 ORTHO05D000666 2.9e-06 57.8 170 25.9
BolC9t59936H Brassica oleracea HOM05D000881 ORTHO05D000666 2.9e-06 57.8 135 26.7
ECA232G3228 Erigeron canadensis HOM05D000881 ORTHO05D000666 2.9e-06 57.8 192 27.1
HanXRQChr17g0559031 Helianthus annuus HOM05D000881 ORTHO05D000666 2.9e-06 57.8 95 32.6
Lsat_1_v5_gn_7_14200 Lactuca sativa HOM05D000881 ORTHO05D000666 2.9e-06 57.8 203 26.1
Aqoxy1G00549 Aquilegia oxysepala HOM05D000881 ORTHO05D000666 3.8e-06 57.4 88 31.8
Duzib068G0091 Durio zibethinus HOM05D000881 ORTHO05D000666 3.8e-06 57.4 128 25.8
FvH4_7g05240 Fragaria vesca HOM05D000881 ORTHO05D000666 3.8e-06 57.4 247 22.7
Lj3g0025880 Lotus japonicus HOM05D000881 ORTHO05D000666 3.8e-06 57.4 248 25.0
BraA02t04826Z Brassica rapa HOM05D000881 ORTHO05D000666 4.9e-06 57.0 156 26.9
CSS0028596 Camellia sinensis var. sinensis HOM05D000881 ORTHO05D000666 4.9e-06 57.0 86 31.4
CDE01G0150 Ceratophyllum demersum HOM05D000881 ORTHO05D000666 4.9e-06 57.0 171 22.2
Manes.10G070600 Manihot esculenta HOM05D000881 ORTHO05D000666 6.4e-06 56.6 167 25.7
CSS0013808 Camellia sinensis var. sinensis HOM05D000881 ORTHO05D000666 8.4e-06 56.2 86 31.4
Ciclev10016030m.g Citrus clementina HOM05D000881 ORTHO05D000666 8.4e-06 56.2 81 29.6
Duzib052G0145 Durio zibethinus HOM05D000881 ORTHO05D000666 8.4e-06 56.2 235 25.5
Eucgr.G02656 Eucalyptus grandis HOM05D000881 ORTHO05D000666 8.4e-06 56.2 239 23.0
Nitab4.5_0018311g0010 Nicotiana tabacum HOM05D000881 ORTHO05D000666 8.4e-06 56.2 141 27.7


User provided reference genes

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