Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s0979 Capsella rubella HOM05D004192 ORTHO05D004917 0.0e+00 1694.1 844 100.0
AT3G10550 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 0.0e+00 1599.7 841 94.6
AL3G21970 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 0.0e+00 1590.1 848 94.0
Thhalv10020062m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 0.0e+00 1557.0 845 92.2
Sp3g08830 Schrenkiella parvula HOM05D004192 ORTHO05D004917 0.0e+00 1549.6 847 91.5
BcaNung05805 Brassica carinata HOM05D004192 ORTHO05D004917 0.0e+00 1473.8 856 86.8
BolC1t05384H Brassica oleracea HOM05D004192 ORTHO05D004917 0.0e+00 1473.8 856 86.8
BraA01t04242Z Brassica rapa HOM05D004192 ORTHO05D004917 0.0e+00 1438.3 829 87.7
Aa31LG3G3400 Aethionema arabicum HOM05D004192 ORTHO05D004917 0.0e+00 1396.7 853 83.2
THA.LOC104816452 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 0.0e+00 1359.0 857 79.8
Thhalv10012689m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 0.0e+00 1319.3 851 77.8
AL6G14190 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 0.0e+00 1306.6 845 77.8
Sp6g38220 Schrenkiella parvula HOM05D004192 ORTHO05D004917 0.0e+00 1304.7 850 77.4
THA.LOC104823194 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 0.0e+00 1302.3 856 77.3
BcaB04g21235 Brassica carinata HOM05D004192 ORTHO05D004917 0.0e+00 1293.1 708 89.4
AT5G04540 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 0.0e+00 1290.8 845 76.2
BolC9t59967H Brassica oleracea HOM05D004192 ORTHO05D004917 0.0e+00 1286.6 839 76.4
A10p31560 Brassica napus HOM05D004192 ORTHO05D004917 0.0e+00 1280.4 840 76.3
BraA10t45202Z Brassica rapa HOM05D004192 ORTHO05D004917 0.0e+00 1280.4 840 76.3
C02p01980 Brassica napus HOM05D004192 ORTHO05D004917 0.0e+00 1268.4 842 75.5
BolC2t06155H Brassica oleracea HOM05D004192 ORTHO05D004917 0.0e+00 1266.5 842 75.5
BraA02t04817Z Brassica rapa HOM05D004192 ORTHO05D004917 0.0e+00 1266.5 842 75.7
Carub.0006s0348 Capsella rubella HOM05D004192 ORTHO05D004917 0.0e+00 1255.4 841 75.0
Thecc.10G097700 Theobroma cacao HOM05D004192 ORTHO05D004917 0.0e+00 1234.2 856 71.1
COL.COLO4_34171 Corchorus olitorius HOM05D004192 ORTHO05D004917 0.0e+00 1223.0 859 70.5
CANSAT56G0904 Cannabis sativa HOM05D004192 ORTHO05D004917 0.0e+00 1208.4 852 70.9
BcaC06g32164 Brassica carinata HOM05D004192 ORTHO05D004917 0.0e+00 1207.2 761 78.4
Gohir.A12G088900 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1198.7 852 69.4
Dinv31284 Davidia involucrata HOM05D004192 ORTHO05D004917 0.0e+00 1196.0 859 70.5
Gorai.008G097500 Gossypium raimondii HOM05D004192 ORTHO05D004917 0.0e+00 1193.7 850 69.1
TWI38G0502 Tripterygium wilfordii HOM05D004192 ORTHO05D004917 0.0e+00 1189.1 853 70.5
ClCG08G008030 Citrullus lanatus HOM05D004192 ORTHO05D004917 0.0e+00 1178.3 863 69.2
CSS0020257 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 0.0e+00 1175.2 861 68.8
FAN10G1549 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1172.9 856 70.1
FvH4_7g06400 Fragaria vesca HOM05D004192 ORTHO05D004917 0.0e+00 1172.1 856 70.2
Duzib114G0707 Durio zibethinus HOM05D004192 ORTHO05D004917 0.0e+00 1164.1 810 72.1
CsaV3_2G032910 Cucumis sativus L. HOM05D004192 ORTHO05D004917 0.0e+00 1163.7 866 68.0
Gohir.A01G129200 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1162.5 839 68.9
Gohir.D01G118800 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1161.7 839 69.0
PGR044G0968 Punica granatum HOM05D004192 ORTHO05D004917 0.0e+00 1161.4 856 69.2
FAN01G1656 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1161.0 856 69.3
Eucgr.J01026 Eucalyptus grandis HOM05D004192 ORTHO05D004917 0.0e+00 1159.8 848 68.9
Gorai.002G144900 Gossypium raimondii HOM05D004192 ORTHO05D004917 0.0e+00 1159.8 839 68.9
Cc02_g10300 Coffea canephora HOM05D004192 ORTHO05D004917 0.0e+00 1158.7 862 67.6
FAN06G5118 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1157.9 884 67.9
MELO3C019875.2 Cucumis melo HOM05D004192 ORTHO05D004917 0.0e+00 1157.1 865 68.1
Duzib128G0631 Durio zibethinus HOM05D004192 ORTHO05D004917 0.0e+00 1154.0 852 68.2
MD02G1244600 Malus domestica HOM05D004192 ORTHO05D004917 0.0e+00 1148.3 855 68.2
RcHm_v2.0_Chr1g0334491 Rosa chinensis HOM05D004192 ORTHO05D004917 0.0e+00 1147.1 854 67.9
Nn6g35085 Nelumbo nucifera HOM05D004192 ORTHO05D004917 0.0e+00 1146.3 838 68.6
Lalb_Chr02g0151281 Lupinus albus HOM05D004192 ORTHO05D004917 0.0e+00 1145.6 848 68.4
Potri.008G026900 Populus trichocarpa HOM05D004192 ORTHO05D004917 0.0e+00 1145.6 848 67.7
Potri.010G233600 Populus trichocarpa HOM05D004192 ORTHO05D004917 0.0e+00 1145.6 854 67.8
Aa31LG11G5410 Aethionema arabicum HOM05D004192 ORTHO05D004917 0.0e+00 1144.8 838 70.6
Phvul.007G105800 Phaseolus vulgaris HOM05D004192 ORTHO05D004917 0.0e+00 1142.5 843 68.1
MD07G1072600 Malus domestica HOM05D004192 ORTHO05D004917 0.0e+00 1138.6 852 67.7
Gohir.D12G087300 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1135.6 850 66.7
Glyma.10G201300 Glycine max HOM05D004192 ORTHO05D004917 0.0e+00 1132.5 852 67.3
Sed0026233 Sechium edule HOM05D004192 ORTHO05D004917 0.0e+00 1129.0 873 66.4
Sabra08G0018400 Salix brachista HOM05D004192 ORTHO05D004917 0.0e+00 1121.7 882 65.2
Hund22302 Selenicereus undatus HOM05D004192 ORTHO05D004917 0.0e+00 1121.7 855 66.7
FAN03G2327 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1119.8 856 67.8
DCAR_019044 Daucus carota HOM05D004192 ORTHO05D004917 0.0e+00 1117.8 850 66.9
arahy.Tifrunner.gnm1.ann1.CA0PQ2 Arachis hypogaea HOM05D004192 ORTHO05D004917 0.0e+00 1117.4 851 66.6
VMungo0720G1942 Vigna mungo HOM05D004192 ORTHO05D004917 0.0e+00 1117.4 844 66.9
EL10Ac4g08605 Beta vulgaris HOM05D004192 ORTHO05D004917 0.0e+00 1117.1 852 67.0
Peaxi162Scf00398g00058 Petunia axillaris HOM05D004192 ORTHO05D004917 0.0e+00 1115.5 867 65.9
Lalb_Chr21g0313171 Lupinus albus HOM05D004192 ORTHO05D004917 0.0e+00 1110.5 848 67.8
MSTRG.8112 Avicennia marina HOM05D004192 ORTHO05D004917 0.0e+00 1107.8 850 67.1
Psat6g175320 Pisum sativum HOM05D004192 ORTHO05D004917 0.0e+00 1107.0 843 67.1
Nn2g13965 Nelumbo nucifera HOM05D004192 ORTHO05D004917 0.0e+00 1105.9 862 66.6
Ca_10484_v3 Cicer arietinum L. HOM05D004192 ORTHO05D004917 0.0e+00 1102.8 858 65.5
Migut.F01661 Erythranthe guttata HOM05D004192 ORTHO05D004917 0.0e+00 1102.4 858 66.1
Manes.10G054700 Manihot esculenta HOM05D004192 ORTHO05D004917 0.0e+00 1101.3 772 71.5
Sc20g0001360 Simmondsia chinensis HOM05D004192 ORTHO05D004917 0.0e+00 1100.1 829 67.3
Lj5g0013826 Lotus japonicus HOM05D004192 ORTHO05D004917 0.0e+00 1099.3 849 66.7
Prupe.2G090700 Prunus persica HOM05D004192 ORTHO05D004917 0.0e+00 1099.0 765 71.0
Lsat_1_v5_gn_8_23081 Lactuca sativa HOM05D004192 ORTHO05D004917 0.0e+00 1098.6 836 66.3
PSO339G1524 Papaver somniferum HOM05D004192 ORTHO05D004917 0.0e+00 1097.8 841 66.2
PSO384G3766 Papaver somniferum HOM05D004192 ORTHO05D004917 0.0e+00 1092.0 841 66.1
ECA233G2766 Erigeron canadensis HOM05D004192 ORTHO05D004917 0.0e+00 1091.6 845 65.4
Sopen11g003530 Solanum pennellii HOM05D004192 ORTHO05D004917 0.0e+00 1086.2 837 65.6
TPR.G2517 Trifolium pratense HOM05D004192 ORTHO05D004917 0.0e+00 1086.2 924 62.1
HanXRQChr08g0218151 Helianthus annuus HOM05D004192 ORTHO05D004917 0.0e+00 1083.9 857 64.4
Solyc11g007670.3 Solanum lycopersicum HOM05D004192 ORTHO05D004917 0.0e+00 1083.6 837 65.6
Sabra10G0181200 Salix brachista HOM05D004192 ORTHO05D004917 0.0e+00 1082.8 924 61.4
Glyma.20G189100 Glycine max HOM05D004192 ORTHO05D004917 0.0e+00 1082.4 866 64.9
Aqoxy1G00968 Aquilegia oxysepala HOM05D004192 ORTHO05D004917 0.0e+00 1077.8 831 66.5
Rhsim03G0109700 Rhododendron simsii HOM05D004192 ORTHO05D004917 0.0e+00 1075.8 967 60.0
ATR0820G117 Amborella trichopoda HOM05D004192 ORTHO05D004917 5.8e-312 1074.7 836 65.4
TAR623G0905 Trochodendron aralioides HOM05D004192 ORTHO05D004917 5.8e-312 1074.7 864 64.4
GSVIVG01034690001 Vitis vinifera HOM05D004192 ORTHO05D004917 5.8e-312 1074.3 750 71.3
HanXRQChr12g0368431 Helianthus annuus HOM05D004192 ORTHO05D004917 8.7e-311 1070.1 840 64.9
CiPaw.13G035500 Carya illinoinensis HOM05D004192 ORTHO05D004917 1.5e-310 1069.3 856 64.6
Sed0024945 Sechium edule HOM05D004192 ORTHO05D004917 1.7e-309 1065.8 765 69.7
SGA_v2.0_scaffold62G21320 Striga asiatica HOM05D004192 ORTHO05D004917 3.1e-308 1061.6 914 61.5
Lj3A933G36 Lonicera japonica HOM05D004192 ORTHO05D004917 5.0e-306 1054.3 864 63.7
Ah.04g163610 Amaranthus hybridus HOM05D004192 ORTHO05D004917 1.7e-301 1039.3 845 64.3
CSS0018543 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 1.1e-300 1036.6 727 70.7
Lj2C27G6 Lonicera japonica HOM05D004192 ORTHO05D004917 1.8e-300 1035.8 946 59.5
C09p72230 Brassica napus HOM05D004192 ORTHO05D004917 2.2e-298 1028.9 662 77.3
HPP92_001744 Vanilla planifolia HOM05D004192 ORTHO05D004917 2.0e-294 1015.8 828 63.0
Haze_02630 Corylus avellana HOM05D004192 ORTHO05D004917 3.4e-294 1015.0 1013 55.3
Atru.chr12.952 Acer truncatum HOM05D004192 ORTHO05D004917 4.4e-294 1014.6 699 72.1
HanXRQChr14g0456301 Helianthus annuus HOM05D004192 ORTHO05D004917 4.4e-294 1014.6 820 63.8
Nitab4.5_0000593g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 1.7e-290 1002.7 888 60.0
CAN.G135.58 Capsicum annuum HOM05D004192 ORTHO05D004917 1.5e-289 999.6 744 67.9
CDE06G2538 Ceratophyllum demersum HOM05D004192 ORTHO05D004917 6.6e-274 947.6 715 66.6
SEGI_16113 Sequoiadendron giganteum HOM05D004192 ORTHO05D004917 9.8e-270 933.7 842 57.6
Actinidia18569 Actinidia chinensis HOM05D004192 ORTHO05D004917 9.2e-260 900.6 606 75.1
CARHR085080 Cardamine hirsuta HOM05D004192 ORTHO05D004917 4.6e-259 898.3 477 95.0
ECA238G3394 Erigeron canadensis HOM05D004192 ORTHO05D004917 3.9e-258 895.2 787 58.6
AUR62041535 Chenopodium quinoa HOM05D004192 ORTHO05D004917 8.6e-258 894.0 834 57.3
AUR62041537 Chenopodium quinoa HOM05D004192 ORTHO05D004917 1.1e-257 893.6 835 57.2
PGSC0003DMG402027320 Solanum tuberosum HOM05D004192 ORTHO05D004917 5.6e-249 864.8 740 61.1
CiPaw.14G028000 Carya illinoinensis HOM05D004192 ORTHO05D004917 1.9e-228 796.6 535 73.3
AagrBONN_evm.TU.Sc2ySwM_368.2559 Anthoceros agrestis HOM05D004192 ORTHO05D004917 1.6e-227 793.5 853 50.3
A01p41680 Brassica napus HOM05D004192 ORTHO05D004917 3.5e-227 792.3 462 88.7
unitig_736.g22321 Utricularia gibba HOM05D004192 ORTHO05D004917 3.4e-222 775.8 845 51.5
Lsat_1_v5_gn_2_102840 Lactuca sativa HOM05D004192 ORTHO05D004917 1.3e-213 747.3 767 54.6
Pp3c18_20050 Physcomitrium patens HOM05D004192 ORTHO05D004917 2.9e-205 719.5 868 46.9
Pp3c22_15020 Physcomitrium patens HOM05D004192 ORTHO05D004917 2.7e-203 713.0 856 46.6
Medtr1g492590 Medicago truncatula HOM05D004192 ORTHO05D004917 7.4e-201 704.9 537 67.2
Mapoly0087s0031 Marchantia polymorpha HOM05D004192 ORTHO05D004917 1.8e-199 700.3 860 45.9
CARHR085070 Cardamine hirsuta HOM05D004192 ORTHO05D004917 1.1e-196 691.0 371 90.6
CARHR208730 Cardamine hirsuta HOM05D004192 ORTHO05D004917 3.7e-192 676.0 460 73.5
Os08g0556700 Oryza sativa ssp. japonica HOM05D004192 ORTHO05D004917 1.8e-167 594.0 541 59.5
Nitab4.5_0003408g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 1.2e-163 581.3 755 45.6
Ciclev10031728m.g Citrus clementina HOM05D004192 ORTHO05D004917 1.0e-162 578.2 389 74.8
vmacro07217 Vaccinium macrocarpon HOM05D004192 ORTHO05D004917 4.9e-152 542.7 492 60.4
SMO367G0225 Selaginella moellendorffii HOM05D004192 ORTHO05D004917 1.1e-151 541.6 806 41.8
SHI21315 Sapria himalayana HOM05D004192 ORTHO05D004917 1.4e-151 541.2 473 60.3
AL3G45840 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 6.0e-150 535.8 365 77.5
Oeu026557.1 Olea europaea HOM05D004192 ORTHO05D004917 8.1e-147 525.4 737 43.7
MBI17_g20218_MAGBIO Magnolia biondii HOM05D004192 ORTHO05D004917 3.3e-140 503.4 458 57.6
Zm00001eb039660 Zea mays HOM05D004192 ORTHO05D004917 2.8e-131 473.8 460 56.5
Hma1.2p1_0492F.1_g164750 Hydrangea macrophylla HOM05D004192 ORTHO05D004917 4.8e-131 473.0 393 60.6
Cpa.g.sc942.1 Carica papaya HOM05D004192 ORTHO05D004917 8.1e-131 472.2 301 74.4
MBI17_g20211_MAGBIO Magnolia biondii HOM05D004192 ORTHO05D004917 4.0e-122 443.4 352 64.8
arahy.Tifrunner.gnm1.ann1.VIL3TT Arachis hypogaea HOM05D004192 ORTHO05D004917 5.6e-116 422.9 305 68.2
Medtr1g092570 Medicago truncatula HOM05D004192 ORTHO05D004917 2.6e-113 414.1 308 66.9
SHI21312 Sapria himalayana HOM05D004192 ORTHO05D004917 6.1e-102 376.3 311 59.8
Hma1.2p1_0492F.1_g164740 Hydrangea macrophylla HOM05D004192 ORTHO05D004917 4.8e-83 313.5 204 74.0
HanXRQChr14g0456291 Helianthus annuus HOM05D004192 ORTHO05D004917 6.1e-78 296.6 283 52.7
Psat0s4326g0040 Pisum sativum HOM05D004192 ORTHO05D004917 2.2e-67 261.5 173 70.5
Oeu026556.1 Olea europaea HOM05D004192 ORTHO05D004917 4.4e-60 237.3 253 50.2
Zm00001eb215930 Zea mays HOM05D004192 ORTHO05D004917 5.7e-60 236.9 186 61.3
Cpa.g.c33984 Carica papaya HOM05D004192 ORTHO05D004917 1.8e-58 231.9 155 75.5
vmacro07216 Vaccinium macrocarpon HOM05D004192 ORTHO05D004917 6.4e-51 206.8 211 50.7
Psat0s3097g0040 Pisum sativum HOM05D004192 ORTHO05D004917 7.0e-50 203.4 145 71.7
Cfa026029 Carpinus fangiana HOM05D004192 ORTHO05D004917 4.0e-45 187.6 490 32.0
BcaB02g10205 Brassica carinata HOM05D004192 ORTHO05D004917 1.6e-41 175.6 121 74.4
PGSC0003DMG401027320 Solanum tuberosum HOM05D004192 ORTHO05D004917 1.8e-37 162.2 160 57.5
TAR371G0071 Trochodendron aralioides HOM05D004192 ORTHO05D004917 9.5e-31 139.8 128 61.7
SHI21313 Sapria himalayana HOM05D004192 ORTHO05D004917 6.2e-30 137.1 72 95.8
QL04p040652 Quercus lobata HOM05D004192 ORTHO05D004917 1.6e-25 122.5 269 33.8
QL04p040713 Quercus lobata HOM05D004192 ORTHO05D004917 3.0e-24 118.2 122 57.4
RcHm_v2.0_Chr4g0433221 Rosa chinensis HOM05D004192 ORTHO05D004917 3.1e-21 108.2 66 81.8
RcHm_v2.0_Chr0c16g0499861 Rosa chinensis HOM05D004192 ORTHO05D004917 8.4e-19 100.1 58 84.5
Oeu021819.1 Olea europaea HOM05D004192 ORTHO05D004917 3.9e-16 91.3 76 64.5
Rhsim01G0150300 Rhododendron simsii HOM05D004192 ORTHO05D004917 1.1e-13 83.2 79 53.2
Actinidia18568 Actinidia chinensis HOM05D004192 ORTHO05D004917 4.0e-13 81.3 106 44.3
Nitab4.5_0003408g0010 Nicotiana tabacum HOM05D004192 ORTHO05D004917 1.5e-12 79.3 70 58.6
RcHm_v2.0_Chr2g0132831 Rosa chinensis HOM05D004192 ORTHO05D004917 2.1e-09 68.9 44 77.3
AL4G18520 Arabidopsis lyrata HOM05D003414 ORTHO05D003913 7.9e-09 67.0 35 88.6
AL4G19510 Arabidopsis lyrata HOM05D002764 ORTHO05D002960 7.9e-09 67.0 35 88.6
AL5G23210 Arabidopsis lyrata HOM05D063572 ORTHO05D002960 7.9e-09 67.0 35 88.6
Lsat_1_v5_gn_6_80241 Lactuca sativa HOM05D004192 ORTHO05D004917 5.6e-07 60.8 44 68.2
C06p52200 Brassica napus HOM05D002643 ORTHO05D002984 2.8e-06 58.5 43 74.4
AL6G39020 Arabidopsis lyrata HOM05D003414 ORTHO05D003913 6.2e-06 57.4 35 80.0


User provided reference genes

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