Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s0969 Capsella rubella HOM05D010420 ORTHO05D012780 1.6e-85 319.3 156 100.0
Carub.0007s3295 Capsella rubella HOM05D010420 ORTHO05D012780 9.3e-49 197.2 141 71.6
AL7G46660 Arabidopsis lyrata HOM05D010420 ORTHO05D012780 7.6e-43 177.6 161 64.0
Carub.0007s3296 Capsella rubella HOM05D010420 ORTHO05D012780 5.7e-38 161.4 156 60.3
AL3G21840 Arabidopsis lyrata HOM05D010420 ORTHO05D012780 1.8e-36 156.4 100 76.0
CARHR120840 Cardamine hirsuta HOM05D010420 ORTHO05D012780 1.5e-35 153.3 120 61.7
A07p07650 Brassica napus HOM05D010420 ORTHO05D012780 4.5e-35 151.8 149 57.7
BraA07t28558Z Brassica rapa HOM05D010420 ORTHO05D012780 1.0e-34 150.6 158 56.3
BcaC06g35740 Brassica carinata HOM05D010420 ORTHO05D012780 2.2e-34 149.4 161 55.3
C07p11450 Brassica napus HOM05D010420 ORTHO05D012780 2.2e-34 149.4 161 54.7
BolC7t41619H Brassica oleracea HOM05D010420 ORTHO05D012780 2.2e-34 149.4 161 54.7
C03p54120 Brassica napus HOM05D010420 ORTHO05D012780 4.6e-32 141.7 163 54.0
BraA03t13515Z Brassica rapa HOM05D010420 ORTHO05D012780 1.8e-31 139.8 163 53.4
BolC3t17703H Brassica oleracea HOM05D010420 ORTHO05D012780 3.9e-31 138.7 154 52.6
A03p43810 Brassica napus HOM05D010420 ORTHO05D012780 5.1e-31 138.3 164 53.7
BcaC01g03271 Brassica carinata HOM05D010420 ORTHO05D012780 5.7e-30 134.8 152 51.3
CARHR120850 Cardamine hirsuta HOM05D010420 ORTHO05D012780 1.1e-28 130.6 98 64.3
BcaB05g22282 Brassica carinata HOM05D010420 ORTHO05D012780 2.4e-28 129.4 122 55.7
BcaB06g26673 Brassica carinata HOM05D010420 ORTHO05D012780 2.2e-26 122.9 142 49.3
BcaB03g14574 Brassica carinata HOM05D010420 ORTHO05D012780 3.3e-22 109.0 170 45.9
THA.LOC104816675 Tarenaya hassleriana HOM05D003012 ORTHO05D002833 4.8e-21 105.1 141 40.4
THA.LOC104816678 Tarenaya hassleriana HOM05D003012 ORTHO05D002833 3.1e-20 102.4 139 38.8
THA.LOC104816681 Tarenaya hassleriana HOM05D003012 ORTHO05D002833 2.0e-19 99.8 132 43.9
THA.LOC104816440 Tarenaya hassleriana HOM05D003012 ORTHO05D002833 7.2e-17 91.3 135 36.3
THA.LOC104816439 Tarenaya hassleriana HOM05D003012 ORTHO05D002833 6.1e-16 88.2 117 40.2
THA.LOC104816435 Tarenaya hassleriana HOM05D003012 ORTHO05D002833 1.8e-15 86.7 139 34.5
Aa31LG11G5250 Aethionema arabicum HOM05D013273 ORTHO05D002833 2.3e-15 86.3 131 37.4
THA.LOC104816680 Tarenaya hassleriana HOM05D003012 ORTHO05D002833 1.1e-14 84.0 143 35.7
CARHR084970 Cardamine hirsuta HOM05D003012 ORTHO05D002833 1.5e-14 83.6 125 37.6
THA.LOC104816438 Tarenaya hassleriana HOM05D003012 ORTHO05D002833 1.5e-14 83.6 139 34.5
CARHR291870 Cardamine hirsuta HOM05D003012 ORTHO05D002833 2.6e-14 82.8 131 35.1
BcaC02g08873 Brassica carinata HOM05D003012 ORTHO05D002833 5.7e-14 81.6 131 35.9
A04p15380 Brassica napus HOM05D003012 ORTHO05D002833 5.7e-14 81.6 131 35.9
C04p49610 Brassica napus HOM05D003012 ORTHO05D002833 5.7e-14 81.6 131 35.9
BraA04t17178Z Brassica rapa HOM05D003012 ORTHO05D002833 5.7e-14 81.6 131 35.9
Thhalv10028054m.g Eutrema salsugineum HOM05D003012 ORTHO05D002833 1.3e-13 80.5 131 35.1
Carub.0007s3746 Capsella rubella HOM05D003012 ORTHO05D002833 2.8e-13 79.3 132 34.8
Thhalv10022372m.g Eutrema salsugineum HOM05D003012 ORTHO05D002833 2.8e-13 79.3 106 41.5
BcaB06g27716 Brassica carinata HOM05D003012 ORTHO05D002833 6.3e-13 78.2 132 35.6
BcaB08g36803 Brassica carinata HOM05D003012 ORTHO05D002833 6.3e-13 78.2 117 39.3
BolC4t26548H Brassica oleracea HOM05D003012 ORTHO05D002833 6.3e-13 78.2 131 35.1
BcaB02g08008 Brassica carinata HOM05D003012 ORTHO05D002833 8.2e-13 77.8 134 35.1
Sp7g03610 Schrenkiella parvula HOM05D003012 ORTHO05D002833 1.4e-12 77.0 131 34.4
Carub.0007s3750 Capsella rubella HOM05D003012 ORTHO05D002833 2.4e-12 76.3 133 34.6
AL7G52140 Arabidopsis lyrata HOM05D003012 ORTHO05D002833 3.1e-12 75.9 127 33.9
Thhalv10015914m.g Eutrema salsugineum HOM05D003012 ORTHO05D000119 3.1e-12 75.9 107 33.6
Carub.0003s0970 Capsella rubella HOM05D003012 ORTHO05D002833 4.1e-12 75.5 106 37.7
A07p19700 Brassica napus HOM05D003012 ORTHO05D002833 5.3e-12 75.1 129 34.1
BcaC08g44379 Brassica carinata HOM05D003012 ORTHO05D002833 7.0e-12 74.7 131 33.6
C05p59030 Brassica napus HOM05D003012 ORTHO05D002833 7.0e-12 74.7 117 37.6
C06p18130 Brassica napus HOM05D003012 ORTHO05D002833 7.0e-12 74.7 131 33.6
BolC6t37021H Brassica oleracea HOM05D003012 ORTHO05D002833 7.0e-12 74.7 131 33.6
BraA07t29670Z Brassica rapa HOM05D003012 ORTHO05D002833 7.0e-12 74.7 131 33.6
Carub.0007s3747 Capsella rubella HOM05D003012 ORTHO05D002833 7.0e-12 74.7 134 34.3
C09p60090 Brassica napus HOM05D003012 ORTHO05D002833 1.2e-11 73.9 134 35.8
BolC9t58844H Brassica oleracea HOM05D003012 ORTHO05D002833 1.2e-11 73.9 134 35.8
AT5G38440 Arabidopsis thaliana HOM05D003012 ORTHO05D002833 1.6e-11 73.6 133 35.3
BcaC09g48088 Brassica carinata HOM05D003012 ORTHO05D002833 2.0e-11 73.2 108 35.2
A10p22270 Brassica napus HOM05D003012 ORTHO05D002833 2.0e-11 73.2 117 36.8
BraA10t44286Z Brassica rapa HOM05D003012 ORTHO05D002833 2.0e-11 73.2 117 36.8
AT3G10460 Arabidopsis thaliana HOM05D003012 ORTHO05D002833 2.6e-11 72.8 110 39.1
BraA08t33773Z Brassica rapa HOM05D003012 ORTHO05D002833 1.3e-10 70.5 129 34.1
Thhalv10002986m.g Eutrema salsugineum HOM05D003012 ORTHO05D002833 1.3e-10 70.5 110 37.3
C03p88180 Brassica napus HOM05D003012 ORTHO05D002833 2.9e-10 69.3 109 37.6
BolC3t21126H Brassica oleracea HOM05D003012 ORTHO05D002833 2.9e-10 69.3 109 37.6
AT5G38435 Arabidopsis thaliana HOM05D003012 ORTHO05D002833 3.8e-10 68.9 127 32.3
A03p57360 Brassica napus HOM05D003012 ORTHO05D002833 3.8e-10 68.9 130 33.1
BraA03t14802Z Brassica rapa HOM05D003012 ORTHO05D002833 3.8e-10 68.9 130 33.1
Carub.0004s0236 Capsella rubella HOM05D003012 ORTHO05D002833 3.8e-10 68.9 131 33.6
AT2G23148 Arabidopsis thaliana HOM05D003012 ORTHO05D002833 5.0e-10 68.6 131 35.1
BcaC04g18834 Brassica carinata HOM05D003012 ORTHO05D002833 6.5e-10 68.2 133 33.1
C09p60100 Brassica napus HOM05D003012 ORTHO05D002833 6.5e-10 68.2 133 33.1
BolC9t58845H Brassica oleracea HOM05D003012 ORTHO05D002833 6.5e-10 68.2 133 33.1
BolC4t27745H Brassica oleracea HOM05D003012 ORTHO05D002833 8.5e-10 67.8 137 33.6
Carub.0001s3273 Capsella rubella HOM05D003012 ORTHO05D002833 8.5e-10 67.8 107 35.5
Carub.0007s1156 Capsella rubella HOM05D008344 ORTHO05D011034 8.5e-10 67.8 131 35.1
BcaC06g32680 Brassica carinata HOM05D003012 ORTHO05D002833 1.1e-09 67.4 130 32.3
C04p62630 Brassica napus HOM05D003012 ORTHO05D002833 1.1e-09 67.4 133 32.3
C07p55570 Brassica napus HOM05D003012 ORTHO05D002833 1.1e-09 67.4 130 32.3
BcaB03g12743 Brassica carinata HOM05D003012 ORTHO05D002833 1.5e-09 67.0 136 34.6
BolC7t46036H Brassica oleracea HOM05D003012 ORTHO05D002833 1.5e-09 67.0 130 32.3
Thhalv10002720m.g Eutrema salsugineum HOM05D003012 ORTHO05D002833 1.5e-09 67.0 110 35.5
Carub.0007s1157 Capsella rubella HOM05D008344 ORTHO05D011034 1.9e-09 66.6 142 28.2
BcaNung05794 Brassica carinata HOM05D000149 ORTHO05D000076 2.5e-09 66.2 101 36.6
BraA01t04252Z Brassica rapa HOM05D003012 ORTHO05D002833 3.2e-09 65.9 107 33.6
BraA10t44287Z Brassica rapa HOM05D003012 ORTHO05D002833 3.2e-09 65.9 119 32.8
BcaC09g48089 Brassica carinata HOM05D003012 ORTHO05D002833 4.2e-09 65.5 107 33.6
A08p18200 Brassica napus HOM05D003012 ORTHO05D002833 4.2e-09 65.5 121 34.7
CARHR084960 Cardamine hirsuta HOM05D003012 ORTHO05D002833 4.2e-09 65.5 135 32.6
AT4G29037 Arabidopsis thaliana HOM05D008344 ORTHO05D011034 5.5e-09 65.1 121 31.4
A04p25490 Brassica napus HOM05D003012 ORTHO05D002833 5.5e-09 65.1 133 32.3
BraA04t18052Z Brassica rapa HOM05D003012 ORTHO05D002833 5.5e-09 65.1 133 32.3
Carub.0001s3274 Capsella rubella HOM05D003012 ORTHO05D002833 5.5e-09 65.1 110 35.5
THA.LOC104811406 Tarenaya hassleriana HOM05D008344 ORTHO05D011034 5.5e-09 65.1 142 28.9
THA.LOC104815224 Tarenaya hassleriana HOM05D008344 ORTHO05D011034 5.5e-09 65.1 142 28.9
Aa31LG11G5230 Aethionema arabicum HOM05D013273 ORTHO05D015812 7.2e-09 64.7 121 31.4
AL1G49830 Arabidopsis lyrata HOM05D003012 ORTHO05D002833 7.2e-09 64.7 105 33.3
Sp2g03330 Schrenkiella parvula HOM05D003012 ORTHO05D002833 9.4e-09 64.3 105 35.2
SpUn0101_0030 Schrenkiella parvula HOM05D003012 ORTHO05D002833 9.4e-09 64.3 105 35.2
C04p62640 Brassica napus HOM05D003012 ORTHO05D002833 1.2e-08 63.9 137 34.3
Aa31LG11G5110 Aethionema arabicum HOM05D000220 ORTHO05D000141 1.6e-08 63.5 113 32.7
A01p08960 Brassica napus HOM05D008344 ORTHO05D011034 1.6e-08 63.5 114 31.6
C04p62660 Brassica napus HOM05D003012 ORTHO05D002833 1.6e-08 63.5 136 36.0
BolC4t27747H Brassica oleracea HOM05D003012 ORTHO05D002833 1.6e-08 63.5 136 36.0
BraA01t00842Z Brassica rapa HOM05D008344 ORTHO05D011034 1.6e-08 63.5 114 31.6
BraA04t18054Z Brassica rapa HOM05D003012 ORTHO05D002833 1.6e-08 63.5 136 35.3
AL4G12990 Arabidopsis lyrata HOM05D003012 ORTHO05D002833 2.1e-08 63.2 130 33.8
A10p22280 Brassica napus HOM05D003012 ORTHO05D002833 2.7e-08 62.8 130 32.3
Cpa.g.sc8.195 Carica papaya HOM05D000256 ORTHO05D000119 2.7e-08 62.8 95 36.8
CARHR236770 Cardamine hirsuta HOM05D008344 ORTHO05D011034 4.7e-08 62.0 114 31.6
A01p29940 Brassica napus HOM05D003012 ORTHO05D002833 6.1e-08 61.6 128 32.8
BraA01t03124Z Brassica rapa HOM05D003012 ORTHO05D002833 6.1e-08 61.6 128 32.8
COL.COLO4_36728 Corchorus olitorius HOM05D000256 ORTHO05D000119 6.1e-08 61.6 108 32.4
THA.LOC104813236 Tarenaya hassleriana HOM05D008344 ORTHO05D011034 6.1e-08 61.6 97 30.9
A03p01280 Brassica napus HOM05D003012 ORTHO05D002833 8.0e-08 61.2 127 30.7
BraA03t09509Z Brassica rapa HOM05D003012 ORTHO05D002833 8.0e-08 61.2 127 30.7
C01p37850 Brassica napus HOM05D003012 ORTHO05D002833 1.0e-07 60.8 128 32.8
BolC1t03746H Brassica oleracea HOM05D003012 ORTHO05D002833 1.0e-07 60.8 128 32.8
Carub.0003s2722 Capsella rubella HOM05D003012 ORTHO05D002833 1.4e-07 60.5 105 33.3
Glyma.13G129200 Glycine max HOM05D000256 ORTHO05D000119 1.8e-07 60.1 132 31.8
Gohir.A08G193448 Gossypium hirsutum HOM05D000256 ORTHO05D000119 1.8e-07 60.1 108 35.2
Aa31LG3G3260 Aethionema arabicum HOM05D003012 ORTHO05D002833 2.3e-07 59.7 103 36.9
BolC1t05395H Brassica oleracea HOM05D003012 ORTHO05D002833 2.3e-07 59.7 90 35.6
Carub.0003s2723 Capsella rubella HOM05D003012 ORTHO05D002833 2.3e-07 59.7 132 32.6
Cpa.g.sc59.131 Carica papaya HOM05D000256 ORTHO05D000119 2.3e-07 59.7 130 30.8
Gohir.A08G193464 Gossypium hirsutum HOM05D000256 ORTHO05D000119 2.3e-07 59.7 108 35.2
AL7G23410 Arabidopsis lyrata HOM05D008344 ORTHO05D011034 3.0e-07 59.3 114 29.8
A04p25530 Brassica napus HOM05D001040 ORTHO05D002311 4.0e-07 58.9 122 32.8
BraA04t18057Z Brassica rapa HOM05D001040 ORTHO05D002311 4.0e-07 58.9 122 32.8
Aqoxy4G01112 Aquilegia oxysepala HOM05D000256 ORTHO05D000119 5.2e-07 58.5 76 40.8
AL3G21830 Arabidopsis lyrata HOM05D003012 ORTHO05D002833 5.2e-07 58.5 131 30.5
BcaC06g31836 Brassica carinata HOM05D003012 ORTHO05D002833 5.2e-07 58.5 105 33.3
Ciclev10022738m.g Citrus clementina HOM05D000256 ORTHO05D000119 5.2e-07 58.5 114 31.6
THA.LOC104811405 Tarenaya hassleriana HOM05D008344 ORTHO05D011034 5.2e-07 58.5 97 27.8
A03p01270 Brassica napus HOM05D003012 ORTHO05D002833 6.7e-07 58.2 128 29.7
C04p62680 Brassica napus HOM05D001040 ORTHO05D002311 6.7e-07 58.2 122 32.8
BolC4t27751H Brassica oleracea HOM05D001040 ORTHO05D002311 6.7e-07 58.2 122 32.8
BraA04t18436Z Brassica rapa HOM05D003012 ORTHO05D002833 6.7e-07 58.2 128 32.8
QL09p044329 Quercus lobata HOM05D000256 ORTHO05D000119 8.8e-07 57.8 106 34.9
Carub.0007s3117 Capsella rubella HOM05D003012 ORTHO05D002833 1.2e-06 57.4 110 30.9
unitig_22.g6132 Utricularia gibba HOM05D000256 ORTHO05D000119 1.5e-06 57.0 102 33.3
Aqoxy3G02151 Aquilegia oxysepala HOM05D000256 ORTHO05D000119 2.0e-06 56.6 70 37.1
A01p41800 Brassica napus HOM05D003012 ORTHO05D002833 2.0e-06 56.6 73 39.7
Thhalv10017589m.g Eutrema salsugineum HOM05D003012 ORTHO05D002833 2.0e-06 56.6 131 32.1
BcaB01g05798 Brassica carinata HOM05D003012 ORTHO05D002833 2.6e-06 56.2 117 30.8
BcaB01g05894 Brassica carinata HOM05D000149 ORTHO05D000076 2.6e-06 56.2 80 37.5
A03p01640 Brassica napus HOM05D000149 ORTHO05D000076 2.6e-06 56.2 80 37.5
C03p02010 Brassica napus HOM05D003012 ORTHO05D002833 2.6e-06 56.2 80 37.5
BolC3t12754H Brassica oleracea HOM05D000149 ORTHO05D000076 2.6e-06 56.2 80 37.5
BraA03t09539Z Brassica rapa HOM05D000149 ORTHO05D000076 2.6e-06 56.2 80 37.5
Gorai.004G224600 Gossypium raimondii HOM05D000256 ORTHO05D000119 2.6e-06 56.2 111 31.5
C03p01630 Brassica napus HOM05D003012 ORTHO05D002833 3.3e-06 55.8 128 31.2
BolC3t12716H Brassica oleracea HOM05D003012 ORTHO05D002833 3.3e-06 55.8 117 30.8
Carub.0003s2793 Capsella rubella HOM05D003012 ORTHO05D002833 3.3e-06 55.8 133 31.6
Thecc.01G232200 Theobroma cacao HOM05D000256 ORTHO05D000119 3.3e-06 55.8 132 29.5
BcaB01g05799 Brassica carinata HOM05D003012 ORTHO05D002833 4.4e-06 55.5 128 31.2
BcaC04g18833 Brassica carinata HOM05D003012 ORTHO05D002833 4.4e-06 55.5 81 35.8
Thhalv10015919m.g Eutrema salsugineum HOM05D003012 ORTHO05D002833 4.4e-06 55.5 99 32.3
unitig_22.g6134 Utricularia gibba HOM05D000256 ORTHO05D002833 4.4e-06 55.5 102 32.4
Aa31LG3G3310 Aethionema arabicum HOM05D003012 ORTHO05D002833 5.7e-06 55.1 120 30.8
AL6G13980 Arabidopsis lyrata HOM05D003012 ORTHO05D002833 5.7e-06 55.1 103 35.0
A04p29720 Brassica napus HOM05D003012 ORTHO05D002833 5.7e-06 55.1 128 32.0
BolC3t12715H Brassica oleracea HOM05D003012 ORTHO05D002833 5.7e-06 55.1 128 31.2
Carub.0006s0330 Capsella rubella HOM05D003012 ORTHO05D002833 5.7e-06 55.1 129 31.8
Thhalv10017540m.g Eutrema salsugineum HOM05D003012 ORTHO05D002833 5.7e-06 55.1 132 30.3
VMungo0720G0216 Vigna mungo HOM05D000256 ORTHO05D000119 7.5e-06 54.7 142 31.0
Gorai.004G224500 Gossypium raimondii HOM05D000256 ORTHO05D000119 9.7e-06 54.3 105 33.3


User provided reference genes

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