Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s0959 Capsella rubella HOM05D007188 ORTHO05D009102 9.5e-113 410.2 212 100.0
AL3G21760 Arabidopsis lyrata HOM05D007188 ORTHO05D009102 4.1e-100 368.2 213 91.5
AT3G10405 Arabidopsis thaliana HOM05D007188 ORTHO05D009102 7.8e-99 364.0 213 90.6
CARHR084890 Cardamine hirsuta HOM05D007188 ORTHO05D009102 4.0e-95 351.7 212 88.2
Thhalv10021497m.g Eutrema salsugineum HOM05D007188 ORTHO05D009102 5.1e-90 334.7 217 82.5
Sp3g08680 Schrenkiella parvula HOM05D007188 ORTHO05D009102 6.0e-83 311.2 214 78.5
A03p36520 Brassica napus HOM05D007188 ORTHO05D009102 2.3e-82 309.3 205 80.0
Aa31LG3G3010 Aethionema arabicum HOM05D007188 ORTHO05D009102 3.0e-82 308.9 213 78.4
BolC3t16687H Brassica oleracea HOM05D007188 ORTHO05D009102 6.9e-79 297.7 204 78.9
BraA03t12819Z Brassica rapa HOM05D007188 ORTHO05D009102 4.5e-78 295.0 212 75.5
C03p44120 Brassica napus HOM05D007188 ORTHO05D009102 2.2e-77 292.7 206 78.6
BcaC01g04184 Brassica carinata HOM05D007188 ORTHO05D009102 7.6e-70 267.7 212 72.2
Sabra08G0023300 Salix brachista HOM05D007188 ORTHO05D009102 1.0e-58 230.7 198 61.1
Potri.008G034900 Populus trichocarpa HOM05D007188 ORTHO05D009102 5.1e-58 228.4 195 62.1
Eucgr.G02872 Eucalyptus grandis HOM05D007188 ORTHO05D009102 6.7e-58 228.0 148 72.3
THA.LOC104826897 Tarenaya hassleriana HOM05D007188 ORTHO05D009102 8.7e-58 227.6 230 57.4
Gohir.A05G293300 Gossypium hirsutum HOM05D007188 ORTHO05D009102 1.5e-57 226.9 209 59.8
Duzib106G0123 Durio zibethinus HOM05D007188 ORTHO05D009102 5.7e-57 224.9 200 60.5
Migut.F01952 Erythranthe guttata HOM05D007188 ORTHO05D009102 5.7e-57 224.9 176 65.9
Cfa001805 Carpinus fangiana HOM05D007188 ORTHO05D009102 1.3e-56 223.8 202 60.4
Gohir.D05G294000 Gossypium hirsutum HOM05D007188 ORTHO05D009102 1.6e-56 223.4 209 58.9
QL08p054189 Quercus lobata HOM05D007188 ORTHO05D009102 1.6e-56 223.4 198 61.1
CANSAT56G0643 Cannabis sativa HOM05D007188 ORTHO05D009102 2.8e-56 222.6 178 60.7
CsaV3_5G036040 Cucumis sativus L. HOM05D007188 ORTHO05D009102 4.8e-56 221.9 198 59.1
Sed0000210 Sechium edule HOM05D007188 ORTHO05D009102 4.8e-56 221.9 159 67.9
TWI38G2147 Tripterygium wilfordii HOM05D007188 ORTHO05D009102 6.3e-56 221.5 194 60.8
Manes.07G133140 Manihot esculenta HOM05D007188 ORTHO05D009102 8.2e-56 221.1 197 60.4
Gorai.009G310600 Gossypium raimondii HOM05D007188 ORTHO05D009102 1.1e-55 220.7 209 57.9
CAN.G694.38 Capsicum annuum HOM05D007188 ORTHO05D009102 1.8e-55 219.9 165 66.7
Cc02_g10880 Coffea canephora HOM05D007188 ORTHO05D009102 1.8e-55 219.9 162 67.9
RhsimUnG0185400 Rhododendron simsii HOM05D007188 ORTHO05D009102 3.1e-55 219.2 173 63.6
Actinidia38870 Actinidia chinensis HOM05D007188 ORTHO05D009102 9.0e-55 217.6 206 57.3
CiPaw.02G171800 Carya illinoinensis HOM05D007188 ORTHO05D009102 9.0e-55 217.6 177 62.1
HanXRQChr08g0218401 Helianthus annuus HOM05D007188 ORTHO05D009102 9.0e-55 217.6 158 67.1
Rhsim09G0148000 Rhododendron simsii HOM05D007188 ORTHO05D009102 9.0e-55 217.6 173 63.6
SalBow4G2327 Salvia bowleyana HOM05D007188 ORTHO05D009102 9.0e-55 217.6 160 65.0
GSVIVG01016213001 Vitis vinifera HOM05D007188 ORTHO05D009102 1.2e-54 217.2 192 60.4
MELO3C012404.2 Cucumis melo HOM05D007188 ORTHO05D009102 3.4e-54 215.7 198 58.1
Glyma.20G183500 Glycine max HOM05D007188 ORTHO05D009102 4.5e-54 215.3 148 68.9
TAR623G0008 Trochodendron aralioides HOM05D007188 ORTHO05D009102 5.9e-54 214.9 165 65.5
SGA_v2.0_scaffold62G21381 Striga asiatica HOM05D007188 ORTHO05D009102 7.7e-54 214.5 195 59.5
arahy.Tifrunner.gnm1.ann1.3RW2WH Arachis hypogaea HOM05D007188 ORTHO05D009102 1.0e-53 214.2 149 69.1
arahy.Tifrunner.gnm1.ann1.CRM3NE Arachis hypogaea HOM05D007188 ORTHO05D009102 1.0e-53 214.2 149 69.1
Nn6g35269 Nelumbo nucifera HOM05D007188 ORTHO05D009102 1.7e-53 213.4 160 65.0
CSS0007320 Camellia sinensis var. sinensis HOM05D007188 ORTHO05D009102 2.9e-53 212.6 148 68.9
CSS0035829 Camellia sinensis var. sinensis HOM05D007188 ORTHO05D009102 3.8e-53 212.2 148 68.2
Ah.06g188920 Amaranthus hybridus HOM05D006516 ORTHO05D008083 1.1e-52 210.7 153 64.7
ClCG05G021230 Citrullus lanatus HOM05D007188 ORTHO05D009102 1.1e-52 210.7 206 58.3
Phvul.007G099300 Phaseolus vulgaris HOM05D007188 ORTHO05D009102 1.1e-52 210.7 157 65.0
MD01G1102700 Malus domestica HOM05D007188 ORTHO05D009102 4.2e-52 208.8 192 56.8
VMungo0720G2339 Vigna mungo HOM05D007188 ORTHO05D009102 4.2e-52 208.8 150 65.3
Solyc05g055550.3 Solanum lycopersicum HOM05D007188 ORTHO05D009102 5.5e-52 208.4 177 58.2
Nitab4.5_0001760g0020 Nicotiana tabacum HOM05D007188 ORTHO05D009102 7.2e-52 208.0 175 59.4
Atru.chr12.855 Acer truncatum HOM05D007188 ORTHO05D009102 9.4e-52 207.6 195 57.9
Lsat_1_v5_gn_8_20860 Lactuca sativa HOM05D007188 ORTHO05D009102 9.4e-52 207.6 211 55.5
Sopen05g034000 Solanum pennellii HOM05D007188 ORTHO05D009102 9.4e-52 207.6 186 56.5
Lalb_Chr21g0313651 Lupinus albus HOM05D007188 ORTHO05D009102 1.2e-51 207.2 148 66.2
PGSC0003DMG400023370 Solanum tuberosum HOM05D007188 ORTHO05D009102 1.2e-51 207.2 178 59.0
ECA233G0714 Erigeron canadensis HOM05D007188 ORTHO05D009102 1.6e-51 206.8 201 54.7
Peaxi162Scf00176g01519 Petunia axillaris HOM05D007188 ORTHO05D009102 1.6e-51 206.8 174 61.5
AUR62014280 Chenopodium quinoa HOM05D007188 ORTHO05D009102 2.7e-51 206.1 161 61.5
TPR.G10293 Trifolium pratense HOM05D007188 ORTHO05D009102 6.1e-51 204.9 203 53.7
RcHm_v2.0_Chr1g0362491 Rosa chinensis HOM05D007188 ORTHO05D009102 7.9e-51 204.5 202 55.9
Sc06g0002050 Simmondsia chinensis HOM05D007188 ORTHO05D009102 1.0e-50 204.1 142 66.9
unitig_88.g27814 Utricularia gibba HOM05D007188 ORTHO05D009102 1.4e-50 203.8 195 55.4
CDE09G0470 Ceratophyllum demersum HOM05D007188 ORTHO05D009102 2.3e-50 203.0 149 62.4
Solyc02g033060.3 Solanum lycopersicum HOM05D007188 ORTHO05D009102 3.0e-50 202.6 177 57.1
Aqoxy1G01136 Aquilegia oxysepala HOM05D007188 ORTHO05D009102 5.1e-50 201.8 212 55.2
Lj5g0026151 Lotus japonicus HOM05D007188 ORTHO05D009102 6.7e-50 201.4 168 60.1
FAN01G3175 Fragaria x ananassa HOM05D007188 ORTHO05D009102 1.5e-49 200.3 179 59.8
PSO063G4012 Papaver somniferum HOM05D007188 ORTHO05D009102 2.5e-49 199.5 180 57.2
Ca_10538_v3 Cicer arietinum L. HOM05D007188 ORTHO05D009102 3.3e-49 199.1 188 54.3
Psat6g181120 Pisum sativum HOM05D007188 ORTHO05D009102 5.7e-49 198.4 193 54.9
FAN03G0393 Fragaria x ananassa HOM05D007188 ORTHO05D009102 7.4e-49 198.0 179 58.7
Medtr1g094160 Medicago truncatula HOM05D007188 ORTHO05D009102 1.3e-48 197.2 200 52.5
FAN06G0953 Fragaria x ananassa HOM05D007188 ORTHO05D009102 6.3e-48 194.9 192 54.2
FAN06G2123 Fragaria x ananassa HOM05D007188 ORTHO05D009102 6.3e-48 194.9 192 54.2
FAN10G2630 Fragaria x ananassa HOM05D007188 ORTHO05D009102 1.4e-47 193.7 192 53.6
Zm00001eb022660 Zea mays HOM05D007188 ORTHO05D009102 1.8e-47 193.4 147 62.6
Glyma.10G207400 Glycine max HOM05D007188 ORTHO05D009102 3.1e-47 192.6 150 62.0
Os10g0545100 Oryza sativa ssp. japonica HOM05D007188 ORTHO05D009102 4.1e-47 192.2 137 62.8
Sopen02g011440 Solanum pennellii HOM05D007188 ORTHO05D009102 3.4e-46 189.1 132 68.2
COL.COLO4_36178 Corchorus olitorius HOM05D007188 ORTHO05D009102 1.6e-43 180.3 222 48.2
Thecc.10G085100 Theobroma cacao HOM05D007188 ORTHO05D009102 1.6e-43 180.3 150 60.7
EL10Ac4g08743 Beta vulgaris HOM05D007188 ORTHO05D009102 1.0e-42 177.6 148 59.5
Haze_16743 Corylus avellana HOM05D007188 ORTHO05D009102 2.2e-40 169.9 202 50.0
Mapoly0050s0048 Marchantia polymorpha HOM05D007188 ORTHO05D009102 2.2e-40 169.9 209 46.9
Mapoly0278s0008 Marchantia polymorpha HOM05D007188 ORTHO05D009102 2.2e-40 169.9 209 46.9
Dinv31237 Davidia involucrata HOM05D007188 ORTHO05D009102 3.1e-39 166.0 159 57.2
Pp3c2_18450 Physcomitrium patens HOM05D007188 ORTHO05D009102 1.2e-38 164.1 147 53.7
vmacro04839 Vaccinium macrocarpon HOM05D007188 ORTHO05D009102 2.6e-38 162.9 157 54.1
Hund14950 Selenicereus undatus HOM05D007188 ORTHO05D009102 6.5e-37 158.3 117 63.2
Ciclev10033195m.g Citrus clementina HOM05D007188 ORTHO05D009102 1.6e-35 153.7 90 80.0
Prupe.2G208300 Prunus persica HOM05D007188 ORTHO05D009102 1.0e-34 151.0 159 52.2
Nitab4.5_0000096g0330 Nicotiana tabacum HOM05D007188 ORTHO05D009102 2.0e-33 146.7 164 49.4
AagrBONN_evm.TU.Sc2ySwM_228.639 Anthoceros agrestis HOM05D007188 ORTHO05D009102 3.8e-29 132.5 144 45.8
SMO358G0267 Selaginella moellendorffii HOM05D007188 ORTHO05D009102 7.5e-25 118.2 194 36.6
PSO339G6470 Papaver somniferum HOM05D007188 ORTHO05D009102 9.8e-25 117.9 113 52.2
CBR_g28804 Chara braunii HOM05D007188 ORTHO05D009102 7.7e-22 108.2 184 33.7
SEGI_08985 Sequoiadendron giganteum HOM05D007188 ORTHO05D009102 6.5e-21 105.1 72 68.1
FvH4_7g18710 Fragaria vesca HOM05D007188 ORTHO05D009102 1.2e-17 94.4 134 41.8
MCO11G330 Micromonas commoda HOM05D007188 ORTHO05D009102 2.0e-14 83.6 147 30.6
Cre10.g464650 Chlamydomonas reinhardtii HOM05D007188 ORTHO05D009102 1.0e-10 71.2 122 29.5
Rhsim09G0147800 Rhododendron simsii HOM05D007188 ORTHO05D009102 8.9e-10 68.2 199 31.2
Oeu034116.1 Olea europaea HOM05D007188 ORTHO05D009102 1.2e-09 67.8 51 64.7
PRCOL_00002171 Prasinoderma coloniale HOM05D007188 ORTHO05D009102 1.2e-09 67.8 137 29.9
HPP92_025583 Vanilla planifolia HOM05D006951 ORTHO05D008594 4.4e-09 65.9 49 65.3
RhsimUnG0185100 Rhododendron simsii HOM05D007188 ORTHO05D009102 4.9e-08 62.4 39 71.8
FAN10G3168 Fragaria x ananassa HOM05D007188 ORTHO05D009102 7.0e-07 58.5 102 37.3
vmacro04837 Vaccinium macrocarpon HOM05D000026 ORTHO05D000094 1.2e-06 57.8 39 66.7
HPP92_025582 Vanilla planifolia HOM05D006951 ORTHO05D008594 3.5e-06 56.2 43 53.5


User provided reference genes

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