Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s0933 Capsella rubella HOM05D000240 ORTHO05D002608 0.0e+00 1159.4 686 100.0
AT3G10180 Arabidopsis thaliana HOM05D000240 ORTHO05D002608 2.4e-274 948.7 685 82.8
Sp3g08460 Schrenkiella parvula HOM05D000240 ORTHO05D002608 9.8e-268 926.8 684 81.1
AL3G21510 Arabidopsis lyrata HOM05D000240 ORTHO05D002608 6.6e-264 914.1 685 81.6
Thhalv10019913m.g Eutrema salsugineum HOM05D000240 ORTHO05D002608 1.1e-263 913.3 684 81.3
BcaB03g11571 Brassica carinata HOM05D000240 ORTHO05D002608 2.3e-248 862.4 684 76.3
A03p35680 Brassica napus HOM05D000240 ORTHO05D002608 8.1e-246 854.0 682 76.2
BolC3t16603H Brassica oleracea HOM05D000240 ORTHO05D002608 3.4e-244 848.6 685 75.3
CARHR084660 Cardamine hirsuta HOM05D000240 ORTHO05D002608 3.4e-244 848.6 684 78.2
C03p43330 Brassica napus HOM05D000240 ORTHO05D002608 8.3e-243 844.0 676 75.6
BraA03t12743Z Brassica rapa HOM05D000240 ORTHO05D002608 3.2e-242 842.0 685 72.6
Aa31LG3G2730 Aethionema arabicum HOM05D000240 ORTHO05D002608 2.5e-239 832.4 720 72.8
BcaC01g04262 Brassica carinata HOM05D000240 ORTHO05D002608 1.5e-228 796.6 682 72.0
THA.LOC104816404 Tarenaya hassleriana HOM05D000240 ORTHO05D002608 9.1e-181 637.9 678 59.1
GSVIVG01033614001 Vitis vinifera HOM05D000240 ORTHO05D002608 4.3e-138 496.1 688 46.8
Thecc.05G137000 Theobroma cacao HOM05D000240 ORTHO05D002608 4.6e-132 476.1 718 45.3
TAR633G0479 Trochodendron aralioides HOM05D000240 ORTHO05D002608 4.0e-128 463.0 729 42.7
Prupe.7G041000 Prunus persica HOM05D000240 ORTHO05D002608 2.4e-125 453.8 716 45.0
Duzib106G0433 Durio zibethinus HOM05D000240 ORTHO05D002608 1.3e-123 448.0 716 44.3
Gorai.007G353100 Gossypium raimondii HOM05D000240 ORTHO05D002608 1.5e-122 444.5 765 42.4
Gohir.D11G323100 Gossypium hirsutum HOM05D000240 ORTHO05D002608 2.5e-122 443.7 765 42.2
MD14G1085100 Malus domestica HOM05D000240 ORTHO05D002608 8.1e-121 438.7 722 43.5
Cfa020015 Carpinus fangiana HOM05D000240 ORTHO05D002608 4.0e-120 436.4 741 43.9
Gohir.A11G307601 Gossypium hirsutum HOM05D000240 ORTHO05D002608 5.2e-120 436.0 766 41.5
TWI77G1020 Tripterygium wilfordii HOM05D000240 ORTHO05D002608 5.4e-117 426.0 730 39.7
Sed0010747 Sechium edule HOM05D000240 ORTHO05D002608 7.1e-117 425.6 697 42.8
CANSAT64G1418 Cannabis sativa HOM05D000240 ORTHO05D002608 1.3e-115 421.4 680 48.1
MELO3C009763.2 Cucumis melo HOM05D000240 ORTHO05D002608 1.3e-115 421.4 696 42.4
CiPaw.09G046800 Carya illinoinensis HOM05D000240 ORTHO05D002608 1.9e-114 417.5 719 41.4
ClCG10G016160 Citrullus lanatus HOM05D000240 ORTHO05D002608 1.9e-114 417.5 697 41.9
PGR031G0545 Punica granatum HOM05D000240 ORTHO05D002608 4.3e-114 416.4 685 44.4
CsaV3_3G040260 Cucumis sativus L. HOM05D000240 ORTHO05D002608 9.6e-114 415.2 696 41.8
CAN.G1280.50 Capsicum annuum HOM05D000127 ORTHO05D002608 8.1e-113 412.1 683 41.3
Actinidia09265 Actinidia chinensis HOM05D000240 ORTHO05D002608 1.1e-112 411.8 727 43.1
Lj5g0004487 Lotus japonicus HOM05D000240 ORTHO05D002608 1.4e-112 411.4 743 40.0
Lalb_Chr21g0316681 Lupinus albus HOM05D000240 ORTHO05D002608 2.6e-111 407.1 697 41.9
Potri.006G040700 Populus trichocarpa HOM05D000240 ORTHO05D002608 2.4e-109 400.6 710 40.6
EL10Ac3g07197 Beta vulgaris HOM05D000240 ORTHO05D002608 4.6e-108 396.4 767 38.3
Nitab4.5_0002208g0050 Nicotiana tabacum HOM05D000240 ORTHO05D002608 8.7e-107 392.1 686 41.0
Medtr1g484960 Medicago truncatula HOM05D000240 ORTHO05D002608 3.3e-106 390.2 718 40.7
Rhsim08G0184500 Rhododendron simsii HOM05D000240 ORTHO05D002608 1.7e-102 377.9 854 37.5
Phvul.001G052600 Phaseolus vulgaris HOM05D000240 ORTHO05D002608 2.9e-102 377.1 719 37.8
Sabra06G0027600 Salix brachista HOM05D000240 ORTHO05D002608 1.9e-101 374.4 721 38.8
Cpa.g.sc1212.3 Carica papaya HOM05D000240 ORTHO05D002608 7.1e-101 372.5 551 47.5
Glyma.17G208400 Glycine max HOM05D000240 ORTHO05D002608 9.3e-101 372.1 717 38.4
Ah.04g151070 Amaranthus hybridus HOM05D000240 ORTHO05D002608 3.5e-100 370.2 722 41.6
QL07p009810 Quercus lobata HOM05D000240 ORTHO05D002608 1.3e-99 368.2 596 43.8
Nn7g36671 Nelumbo nucifera HOM05D000240 ORTHO05D002608 5.1e-99 366.3 680 40.1
Nitab4.5_0002162g0030 Nicotiana tabacum HOM05D000240 ORTHO05D002608 3.7e-97 360.1 689 38.8
Hund19103 Selenicereus undatus HOM05D000240 ORTHO05D002608 3.7e-97 360.1 730 37.3
Atru.chr12.1237 Acer truncatum HOM05D000240 ORTHO05D002608 6.2e-97 359.4 727 37.6
Sopen04g016330 Solanum pennellii HOM05D000240 ORTHO05D002608 1.5e-95 354.8 684 38.0
MBI14_g34249_MAGBIO Magnolia biondii HOM05D000240 ORTHO05D002608 5.8e-95 352.8 722 38.0
Sc13g0001240 Simmondsia chinensis HOM05D000240 ORTHO05D002608 7.6e-95 352.4 688 40.0
Solyc04g040110.3 Solanum lycopersicum HOM05D000240 ORTHO05D002608 1.7e-94 351.3 684 37.6
Cc00_g02410 Coffea canephora HOM05D000240 ORTHO05D002608 4.9e-94 349.7 600 41.0
Haze_16236 Corylus avellana HOM05D000240 ORTHO05D002608 2.1e-92 344.4 959 34.7
Manes.12G155600 Manihot esculenta HOM05D000240 ORTHO05D002608 1.0e-91 342.0 685 38.5
AUR62030350 Chenopodium quinoa HOM05D000240 ORTHO05D002608 6.7e-91 339.3 731 36.3
TPR.G2588 Trifolium pratense HOM05D000240 ORTHO05D002608 1.3e-89 335.1 729 35.8
COL.COLO4_08473 Corchorus olitorius HOM05D000240 ORTHO05D002608 3.7e-89 333.6 718 40.0
DCAR_006071 Daucus carota HOM05D000240 ORTHO05D002608 8.4e-86 322.4 684 37.0
ECA240G1295 Erigeron canadensis HOM05D000240 ORTHO05D002608 1.9e-82 311.2 679 35.2
SGA_v2.0_scaffold105G30298 Striga asiatica HOM05D000240 ORTHO05D002608 3.3e-82 310.5 702 37.3
AUR62040836 Chenopodium quinoa HOM05D000240 ORTHO05D002608 1.8e-80 304.7 721 38.8
Lsat_1_v5_gn_6_79340 Lactuca sativa HOM05D000240 ORTHO05D002608 5.9e-79 299.7 666 35.9
ATR0580G186 Amborella trichopoda HOM05D000240 ORTHO05D002608 7.6e-79 299.3 741 34.0
Dinv09474 Davidia involucrata HOM05D000240 ORTHO05D002608 7.6e-79 299.3 384 49.5
HanXRQChr13g0414111 Helianthus annuus HOM05D000240 ORTHO05D002608 1.1e-74 285.4 720 38.1
arahy.Tifrunner.gnm1.ann1.5T4GGV Arachis hypogaea HOM05D000240 ORTHO05D002608 2.5e-74 284.3 471 41.6
arahy.Tifrunner.gnm1.ann1.CVH2M9 Arachis hypogaea HOM05D000240 ORTHO05D002608 1.7e-73 281.6 471 40.3
MSTRG.6373 Avicennia marina HOM05D000240 ORTHO05D002608 6.3e-73 279.6 652 37.4
Ciclev10004865m.g Citrus clementina HOM05D000240 ORTHO05D002608 3.4e-71 273.9 494 41.7
Oeu059334.1 Olea europaea HOM05D000240 ORTHO05D002608 5.9e-71 273.1 507 40.0
Migut.J01665 Erythranthe guttata HOM05D000240 ORTHO05D002608 1.4e-69 268.5 669 35.6
SalBow6G3141 Salvia bowleyana HOM05D000240 ORTHO05D002608 4.2e-69 266.9 655 36.5
Peaxi162Scf01010g00017 Petunia axillaris HOM05D000240 ORTHO05D002608 1.6e-68 265.0 667 37.2
Aqoxy1G00453 Aquilegia oxysepala HOM05D000240 ORTHO05D002608 5.1e-67 260.0 691 32.9
CSS0036916 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D002608 1.1e-64 252.3 559 41.0
Ca_12048_v3 Cicer arietinum L. HOM05D000240 ORTHO05D002608 7.7e-63 246.1 468 41.9
VMungo0647G2525 Vigna mungo HOM05D000240 ORTHO05D002608 5.3e-56 223.4 416 43.5
HPP92_010739 Vanilla planifolia HOM05D000240 ORTHO05D002608 2.7e-52 211.1 532 35.5
Lj2A398T49 Lonicera japonica HOM05D000240 ORTHO05D002608 6.1e-52 209.9 413 39.7
PSO384G4909 Papaver somniferum HOM05D000240 ORTHO05D002608 1.8e-51 208.4 663 33.9
Eucgr.A02253 Eucalyptus grandis HOM05D000240 ORTHO05D018836 2.3e-51 208.0 260 50.4
vmacro05229 Vaccinium macrocarpon HOM05D000240 ORTHO05D002608 6.7e-51 206.5 251 53.8
Psat6g089400 Pisum sativum HOM05D000240 ORTHO05D015017 1.0e-43 182.6 430 35.3
RcHm_v2.0_Chr1g0323861 Rosa chinensis HOM05D000240 ORTHO05D002608 9.1e-40 169.5 648 30.1
FAN03G2757 Fragaria x ananassa HOM05D000240 ORTHO05D002608 7.2e-37 159.8 518 32.0
FAN06G4340 Fragaria x ananassa HOM05D000240 ORTHO05D002608 1.2e-34 152.5 519 31.6
Dinv09475 Davidia involucrata HOM05D000240 ORTHO05D015017 4.5e-31 140.6 230 42.2
FvH4_7g02901 Fragaria vesca HOM05D000240 ORTHO05D002608 4.5e-31 140.6 519 31.2
FAN10G3808 Fragaria x ananassa HOM05D000240 ORTHO05D015017 1.7e-30 138.7 453 31.3
MD12G1093000 Malus domestica HOM05D000240 ORTHO05D002608 6.6e-30 136.7 313 36.7
FAN28G2091 Fragaria x ananassa HOM05D000240 ORTHO05D002608 8.6e-30 136.3 518 29.9
CDE05G2293 Ceratophyllum demersum HOM05D000240 ORTHO05D002608 9.5e-29 132.9 385 31.9
Os09g0421200 Oryza sativa ssp. japonica HOM05D000240 ORTHO05D002608 1.4e-27 129.0 351 33.0
BcaC07g42757 Brassica carinata HOM05D000240 ORTHO05D002608 1.2e-26 125.9 99 77.8
Ciclev10005818m.g Citrus clementina HOM05D000240 ORTHO05D015017 9.2e-24 116.3 223 38.6
FAN28G0852 Fragaria x ananassa HOM05D000240 ORTHO05D002608 3.5e-23 114.4 541 28.1
Sabra13G0113100 Salix brachista HOM05D000009 ORTHO05D000008 1.3e-22 112.5 227 40.1
vmacro05230 Vaccinium macrocarpon HOM05D000240 ORTHO05D015017 3.0e-22 111.3 273 35.2
Psat7g032320 Pisum sativum HOM05D000240 ORTHO05D002608 4.7e-20 104.0 237 34.2
QL07p009794 Quercus lobata HOM05D000240 ORTHO05D002608 4.7e-20 104.0 137 46.7
Oeu059363.3 Olea europaea HOM05D000240 ORTHO05D002608 1.5e-18 99.0 260 34.2
CSS0035154 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D015017 3.2e-16 91.3 100 54.0
CSS0017071 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D002608 3.5e-15 87.8 89 57.3
CSS0038394 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D002608 3.5e-15 87.8 89 57.3
Psat6g089440 Pisum sativum HOM05D000240 ORTHO05D002608 7.8e-15 86.7 191 33.0
VMungo0647G0327 Vigna mungo HOM05D000240 ORTHO05D015017 8.6e-14 83.2 212 32.1
BraA10t45353Z Brassica rapa HOM05D000240 ORTHO05D002608 1.1e-13 82.8 58 75.9
COL.COLO4_07160 Corchorus olitorius HOM05D000240 ORTHO05D015017 1.1e-13 82.8 64 70.3
Mapoly0060s0012 Marchantia polymorpha HOM05D000240 ORTHO05D002608 3.6e-12 77.8 654 22.2
Hma1.2p1_0595F.1_g186120 Hydrangea macrophylla HOM05D000240 ORTHO05D015017 7.5e-10 70.1 173 35.3
MBI14_g46138_MAGBIO Magnolia biondii HOM05D000240 ORTHO05D016689 9.9e-10 69.7 133 36.8
Gohir.D04G091200 Gossypium hirsutum HOM05D000240 ORTHO05D018836 3.7e-09 67.8 60 65.0
Gorai.009G392300 Gossypium raimondii HOM05D000240 ORTHO05D018836 3.7e-09 67.8 60 65.0
Lsat_1_v5_gn_7_4320 Lactuca sativa HOM05D000240 ORTHO05D015017 3.7e-09 67.8 91 47.3
Gohir.D10G111332 Gossypium hirsutum HOM05D000240 ORTHO05D018836 4.9e-09 67.4 60 65.0
Os09g0421166 Oryza sativa ssp. japonica HOM05D000240 ORTHO05D015017 4.9e-09 67.4 142 38.0
Lj2A398T48 Lonicera japonica HOM05D000240 ORTHO05D002608 8.3e-09 66.6 52 67.3
CDE02G4365 Ceratophyllum demersum HOM05D000240 ORTHO05D018836 1.1e-08 66.2 175 30.3
Gorai.002G187100 Gossypium raimondii HOM05D000240 ORTHO05D018836 1.9e-08 65.5 60 63.3
CSS0022645 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D018836 9.2e-08 63.2 57 63.2
Haze_02871 Corylus avellana HOM05D000108 ORTHO05D000014 9.2e-08 63.2 99 47.5
Cc00_g02390 Coffea canephora HOM05D000240 ORTHO05D002608 1.2e-07 62.8 52 61.5
CDE05G3239 Ceratophyllum demersum HOM05D000240 ORTHO05D015017 1.0e-06 59.7 183 29.0
VMungo0647G0305 Vigna mungo HOM05D000240 ORTHO05D002608 2.3e-06 58.5 58 50.0


User provided reference genes

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