Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s0923 Capsella rubella HOM05D005036 ORTHO05D005881 9.4e-43 177.2 147 100.0
Carub.0003s0899 Capsella rubella HOM05D005036 ORTHO05D005881 2.7e-42 175.6 147 95.9
AL3G21130 Arabidopsis lyrata HOM05D005036 ORTHO05D005881 9.1e-38 160.6 147 87.1
AT3G09890 Arabidopsis thaliana HOM05D005036 ORTHO05D005881 1.2e-37 160.2 147 89.1
Thhalv10021529m.g Eutrema salsugineum HOM05D005036 ORTHO05D005881 1.5e-35 153.3 147 82.3
Sp3g08240 Schrenkiella parvula HOM05D005036 ORTHO05D005881 4.2e-35 151.8 147 70.7
CARHR084400 Cardamine hirsuta HOM05D005036 ORTHO05D005881 5.5e-35 151.4 145 82.8
BcaB03g11582 Brassica carinata HOM05D005036 ORTHO05D005881 1.4e-33 146.7 146 82.9
BcaC01g04251 Brassica carinata HOM05D005036 ORTHO05D005881 4.4e-32 141.7 138 86.2
A03p35790 Brassica napus HOM05D005036 ORTHO05D005881 9.7e-32 140.6 148 56.1
BraA03t12751Z Brassica rapa HOM05D005036 ORTHO05D005881 9.7e-32 140.6 148 56.1
C03p43440 Brassica napus HOM05D005036 ORTHO05D005881 2.2e-31 139.4 139 56.1
BcaC01g04252 Brassica carinata HOM05D005036 ORTHO05D005881 2.8e-31 139.0 139 56.1
BolC3t16615H Brassica oleracea HOM05D005036 ORTHO05D005881 2.8e-31 139.0 139 56.1
BcaC05g29502 Brassica carinata HOM05D005036 ORTHO05D005881 8.8e-25 117.5 146 73.3
BcaC05g29503 Brassica carinata HOM05D005036 ORTHO05D005881 8.8e-25 117.5 146 73.3
C05p58170 Brassica napus HOM05D005036 ORTHO05D005881 8.8e-25 117.5 146 73.3
BolC5t34473H Brassica oleracea HOM05D005036 ORTHO05D005881 8.8e-25 117.5 146 73.3
THA.LOC104823230 Tarenaya hassleriana HOM05D005036 ORTHO05D005881 2.6e-24 115.9 140 77.1
Aa31LG3G2370 Aethionema arabicum HOM05D005036 ORTHO05D005881 2.2e-23 112.8 81 93.8
BcaC05g29714 Brassica carinata HOM05D005036 ORTHO05D005881 1.4e-22 110.2 145 53.1
BcaC05g29715 Brassica carinata HOM05D005036 ORTHO05D005881 1.4e-22 110.2 145 53.1
Cc06_g04530 Coffea canephora HOM05D005036 ORTHO05D005881 2.4e-22 109.4 139 79.1
Atru.chr8.1751 Acer truncatum HOM05D005036 ORTHO05D005881 5.4e-22 108.2 137 74.5
BcaC05g29716 Brassica carinata HOM05D005036 ORTHO05D005881 5.4e-22 108.2 143 43.4
RhsimUnG0004000 Rhododendron simsii HOM05D005036 ORTHO05D005881 7.0e-22 107.8 141 66.0
RhsimUnG0067400 Rhododendron simsii HOM05D005036 ORTHO05D005881 7.0e-22 107.8 141 66.0
BcaC05g29712 Brassica carinata HOM05D005036 ORTHO05D005881 9.1e-22 107.5 145 52.4
BcaC05g29713 Brassica carinata HOM05D005036 ORTHO05D005881 9.1e-22 107.5 145 52.4
A05p39150 Brassica napus HOM05D005036 ORTHO05D005881 1.2e-21 107.1 146 71.9
BraA05t22704Z Brassica rapa HOM05D005036 ORTHO05D005881 1.2e-21 107.1 146 71.9
Cpa.g.sc92.91 Carica papaya HOM05D005036 ORTHO05D005881 1.2e-21 107.1 139 69.1
QL07p042294 Quercus lobata HOM05D005036 ORTHO05D005881 2.0e-21 106.3 139 69.1
SGA_v2.0_scaffold224G42932 Striga asiatica HOM05D005036 ORTHO05D005881 5.9e-21 104.8 140 62.1
vmacro08795 Vaccinium macrocarpon HOM05D005036 ORTHO05D005881 7.7e-21 104.4 141 50.4
Nn2g13858 Nelumbo nucifera HOM05D005036 ORTHO05D005881 1.0e-20 104.0 141 69.5
Nitab4.5_0000132g0510 Nicotiana tabacum HOM05D005036 ORTHO05D005881 1.3e-20 103.6 139 69.8
MSTRG.10334 Avicennia marina HOM05D005036 ORTHO05D005881 3.8e-20 102.1 140 60.0
Aqoxy1G01100 Aquilegia oxysepala HOM05D005036 ORTHO05D005881 5.0e-20 101.7 143 62.9
Peaxi162Scf00110g00120 Petunia axillaris HOM05D005036 ORTHO05D005881 5.0e-20 101.7 139 71.2
Oeu016995.1 Olea europaea HOM05D005036 ORTHO05D005881 6.6e-20 101.3 139 69.1
Potri.016G097900 Populus trichocarpa HOM05D005036 ORTHO05D005881 6.6e-20 101.3 139 71.9
Ciclev10012800m.g Citrus clementina HOM05D005036 ORTHO05D005881 8.6e-20 100.9 144 68.8
Sc02g0001470 Simmondsia chinensis HOM05D005036 ORTHO05D005881 1.5e-19 100.1 139 54.0
Potri.006G121500 Populus trichocarpa HOM05D005036 ORTHO05D005881 1.9e-19 99.8 139 74.1
VMungo0720G2361 Vigna mungo HOM05D005036 ORTHO05D005881 1.9e-19 99.8 140 70.7
Migut.L01721 Erythranthe guttata HOM05D005036 ORTHO05D005881 2.5e-19 99.4 141 68.8
Peaxi162Scf01128g00018 Petunia axillaris HOM05D005036 ORTHO05D005881 3.3e-19 99.0 139 52.5
Lalb_Chr02g0155461 Lupinus albus HOM05D005036 ORTHO05D005881 4.2e-19 98.6 137 68.6
CiPaw.10G127400 Carya illinoinensis HOM05D005036 ORTHO05D005881 5.5e-19 98.2 146 65.8
Lj3A990G72 Lonicera japonica HOM05D005036 ORTHO05D005881 5.5e-19 98.2 146 66.4
Cfa017655 Carpinus fangiana HOM05D005036 ORTHO05D005881 7.2e-19 97.8 139 63.3
TWI53G1582 Tripterygium wilfordii HOM05D005036 ORTHO05D005881 7.2e-19 97.8 139 72.7
Nitab4.5_0003314g0090 Nicotiana tabacum HOM05D005036 ORTHO05D005881 9.5e-19 97.4 141 66.7
Actinidia32478 Actinidia chinensis HOM05D005036 ORTHO05D005881 1.2e-18 97.1 139 64.0
Hma1.2p1_0547F.1_g176530 Hydrangea macrophylla HOM05D005036 ORTHO05D005881 1.2e-18 97.1 141 68.8
AUR62026956 Chenopodium quinoa HOM05D005036 ORTHO05D005881 1.6e-18 96.7 141 68.8
HanXRQChr13g0400721 Helianthus annuus HOM05D005036 ORTHO05D005881 2.1e-18 96.3 146 65.8
Actinidia31315 Actinidia chinensis HOM05D005036 ORTHO05D005881 2.8e-18 95.9 139 66.2
EL10Ac7g16693 Beta vulgaris HOM05D005036 ORTHO05D005881 2.8e-18 95.9 141 68.8
Nitab4.5_0002373g0080 Nicotiana tabacum HOM05D005036 ORTHO05D005881 3.6e-18 95.5 141 66.7
PGR004G0584 Punica granatum HOM05D005036 ORTHO05D005881 3.6e-18 95.5 139 68.3
Sabra06G0095700 Salix brachista HOM05D005036 ORTHO05D005881 3.6e-18 95.5 139 71.9
AUR62041564 Chenopodium quinoa HOM05D005036 ORTHO05D005881 4.7e-18 95.1 141 69.5
CANSAT80G0983 Cannabis sativa HOM05D005036 ORTHO05D005881 6.1e-18 94.7 139 68.3
GSVIVG01033679001 Vitis vinifera HOM05D005036 ORTHO05D005881 6.1e-18 94.7 138 66.7
CsaV3_3G036210 Cucumis sativus L. HOM05D005036 ORTHO05D005881 8.0e-18 94.4 136 64.0
SGA_v2.0_scaffold40G15474 Striga asiatica HOM05D005036 ORTHO05D005881 8.0e-18 94.4 139 66.2
HPP92_008393 Vanilla planifolia HOM05D005036 ORTHO05D005881 8.0e-18 94.4 139 54.7
CAN.G488.30 Capsicum annuum HOM05D005036 ORTHO05D005881 1.0e-17 94.0 139 67.6
Duzib093G0365 Durio zibethinus HOM05D005036 ORTHO05D005881 1.0e-17 94.0 144 67.4
Oeu056532.1 Olea europaea HOM05D005036 ORTHO05D005881 1.4e-17 93.6 135 68.1
Psat6g076000 Pisum sativum HOM05D005036 ORTHO05D005881 1.4e-17 93.6 139 69.8
Lj5g0011319 Lotus japonicus HOM05D005036 ORTHO05D005881 1.8e-17 93.2 139 65.5
Sed0017772 Sechium edule HOM05D005036 ORTHO05D005881 1.8e-17 93.2 136 66.2
Haze_20497 Corylus avellana HOM05D005036 ORTHO05D005881 2.3e-17 92.8 139 59.7
Manes.09G062100 Manihot esculenta HOM05D005036 ORTHO05D005881 2.3e-17 92.8 139 66.9
Sopen10g033320 Solanum pennellii HOM05D005036 ORTHO05D005881 2.3e-17 92.8 139 67.6
Thecc.05G071400 Theobroma cacao HOM05D005036 ORTHO05D005881 2.3e-17 92.8 144 65.3
Manes.08G013000 Manihot esculenta HOM05D005036 ORTHO05D005881 3.0e-17 92.4 139 69.1
unitig_578.g16379 Utricularia gibba HOM05D000468 ORTHO05D005881 3.0e-17 92.4 137 70.1
Ca_08897_v3 Cicer arietinum L. HOM05D005036 ORTHO05D005881 5.2e-17 91.7 139 67.6
Phvul.007G151800 Phaseolus vulgaris HOM05D005036 ORTHO05D005881 5.2e-17 91.7 139 67.6
PGSC0003DMG400028280 Solanum tuberosum HOM05D005036 ORTHO05D005881 5.2e-17 91.7 139 67.6
Migut.J00453 Erythranthe guttata HOM05D005036 ORTHO05D005881 6.8e-17 91.3 139 66.2
FvH4_6g16830 Fragaria vesca HOM05D005036 ORTHO05D005881 8.9e-17 90.9 139 68.3
FAN14G1811 Fragaria x ananassa HOM05D000001 ORTHO05D000003 8.9e-17 90.9 139 68.3
CDE06G0353 Ceratophyllum demersum HOM05D005036 ORTHO05D005881 1.2e-16 90.5 139 66.9
MELO3C009379.2 Cucumis melo HOM05D005036 ORTHO05D005881 1.2e-16 90.5 136 62.5
PSO339G6683 Papaver somniferum HOM05D005036 ORTHO05D005881 1.2e-16 90.5 141 66.7
ClCG10G019890 Citrullus lanatus HOM05D005036 ORTHO05D005881 1.5e-16 90.1 136 68.4
Gohir.D01G201000 Gossypium hirsutum HOM05D005036 ORTHO05D005881 1.5e-16 90.1 144 64.6
arahy.Tifrunner.gnm1.ann1.HJT5F9 Arachis hypogaea HOM05D005036 ORTHO05D005881 2.0e-16 89.7 137 68.6
arahy.Tifrunner.gnm1.ann1.LB0AEW Arachis hypogaea HOM05D005036 ORTHO05D005881 2.0e-16 89.7 137 68.6
Nitab4.5_0003268g0010 Nicotiana tabacum HOM05D005036 ORTHO05D005881 2.0e-16 89.7 128 59.4
Hund20124 Selenicereus undatus HOM05D005036 ORTHO05D005881 2.0e-16 89.7 154 63.6
ECA233G6008 Erigeron canadensis HOM05D005036 ORTHO05D005881 2.6e-16 89.4 146 64.4
Gohir.A01G214100 Gossypium hirsutum HOM05D005036 ORTHO05D005881 2.6e-16 89.4 147 64.6
TPR.G20997 Trifolium pratense HOM05D005036 ORTHO05D005881 2.6e-16 89.4 139 66.9
DCAR_017666 Daucus carota HOM05D005036 ORTHO05D005881 3.4e-16 89.0 139 66.2
Os03g0145800 Oryza sativa ssp. japonica HOM05D005036 ORTHO05D005881 3.4e-16 89.0 146 47.3
PGSC0003DMG400003873 Solanum tuberosum HOM05D005036 ORTHO05D005881 3.4e-16 89.0 141 66.0
Solyc09g008450.3 Solanum lycopersicum HOM05D005036 ORTHO05D005881 4.4e-16 88.6 141 61.0
FAN02G0694 Fragaria x ananassa HOM05D000001 ORTHO05D000003 5.7e-16 88.2 139 67.6
FAN05G0966 Fragaria x ananassa HOM05D005036 ORTHO05D005881 5.7e-16 88.2 139 67.6
FAN05G3428 Fragaria x ananassa HOM05D005036 ORTHO05D005881 5.7e-16 88.2 139 67.6
FAN09G0503 Fragaria x ananassa HOM05D005036 ORTHO05D000003 5.7e-16 88.2 139 67.6
RcHm_v2.0_Chr3g0470841 Rosa chinensis HOM05D005036 ORTHO05D005881 5.7e-16 88.2 139 66.9
Sopen09g003280 Solanum pennellii HOM05D005036 ORTHO05D005881 5.7e-16 88.2 141 63.8
Lsat_1_v5_gn_6_28400 Lactuca sativa HOM05D005036 ORTHO05D005881 9.8e-16 87.4 140 64.3
MD12G1106800 Malus domestica HOM05D005036 ORTHO05D005881 9.8e-16 87.4 139 66.2
COL.COLO4_26911 Corchorus olitorius HOM05D005036 ORTHO05D005881 1.3e-15 87.0 144 65.3
Glyma.13G146500 Glycine max HOM05D005036 ORTHO05D005881 1.3e-15 87.0 139 67.6
Duzib128G0734 Durio zibethinus HOM05D005036 ORTHO05D005881 1.7e-15 86.7 137 67.2
TAR623G1598 Trochodendron aralioides HOM05D005036 ORTHO05D005881 2.2e-15 86.3 141 60.3
ATR0329G020 Amborella trichopoda HOM05D005036 ORTHO05D005881 2.8e-15 85.9 139 64.7
CSS0031942 Camellia sinensis var. sinensis HOM05D005036 ORTHO05D005881 2.8e-15 85.9 139 66.2
CSS0042807 Camellia sinensis var. sinensis HOM05D005036 ORTHO05D005881 2.8e-15 85.9 139 66.2
Medtr1g062770 Medicago truncatula HOM05D005036 ORTHO05D005881 2.8e-15 85.9 140 65.0
THA.LOC104816666 Tarenaya hassleriana HOM05D005036 ORTHO05D005881 4.9e-15 85.1 48 81.2
Glyma.10G059800 Glycine max HOM05D005036 ORTHO05D005881 1.1e-14 84.0 139 67.6
Eucgr.A01621 Eucalyptus grandis HOM05D005036 ORTHO05D005881 5.4e-14 81.6 43 81.4
Gorai.002G245700 Gossypium raimondii HOM05D005036 ORTHO05D005881 1.2e-13 80.5 43 76.7
Zm00001eb003690 Zea mays HOM05D005036 ORTHO05D005881 1.2e-13 80.5 137 59.9
PSO063G2941 Papaver somniferum HOM05D005036 ORTHO05D005881 3.5e-13 79.0 80 67.5
Dinv37336 Davidia involucrata HOM05D005036 ORTHO05D005881 4.5e-13 78.6 81 67.9
MBI01_g04638_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 7.8e-13 77.8 143 61.5
Prupe.7G125700 Prunus persica HOM05D005036 ORTHO05D005881 1.7e-12 76.6 136 63.2
MBI15_g24508_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 5.0e-12 75.1 143 41.3
MBI18_g12436_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 5.0e-12 75.1 152 57.2
SEGI_13906 Sequoiadendron giganteum HOM05D005036 ORTHO05D005881 5.0e-12 75.1 147 57.1
Psat4g020880 Pisum sativum HOM05D005036 ORTHO05D005881 1.1e-11 73.9 79 69.6
DCAR_015009 Daucus carota HOM05D005036 ORTHO05D005881 1.9e-11 73.2 172 43.6
MBI16_g11024_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 5.6e-11 71.6 78 65.4
Sc02g0001400 Simmondsia chinensis HOM05D005036 ORTHO05D005881 5.6e-11 71.6 142 44.4
AagrBONN_evm.TU.Sc2ySwM_368.2717 Anthoceros agrestis HOM05D005036 ORTHO05D005881 6.1e-10 68.2 48 62.5
MBI13_g13833_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 3.1e-09 65.9 78 62.8
DCAR_032184 Daucus carota HOM05D005036 ORTHO05D005881 8.9e-09 64.3 153 45.1
Pp3c10_11210 Physcomitrium patens HOM05D005036 ORTHO05D005881 2.6e-08 62.8 140 55.7
Psat6g104720 Pisum sativum HOM05D001839 ORTHO05D001867 2.9e-07 59.3 157 31.2
CBR_g9117 Chara braunii HOM05D005036 ORTHO05D005881 3.2e-06 55.8 138 55.8


User provided reference genes

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