Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s0882 Capsella rubella HOM05D007360 ORTHO05D008235 3.2e-210 734.9 405 100.0
AT3G09730 Arabidopsis thaliana HOM05D007360 ORTHO05D008235 2.2e-174 615.9 408 84.8
Sp3g08070 Schrenkiella parvula HOM05D007360 ORTHO05D008235 1.8e-160 569.7 410 77.1
AL3G20950 Arabidopsis lyrata HOM05D007360 ORTHO05D008235 1.2e-156 557.0 408 79.7
Thhalv10020860m.g Eutrema salsugineum HOM05D007360 ORTHO05D008235 5.4e-149 531.6 409 74.3
CARHR084150 Cardamine hirsuta HOM05D007360 ORTHO05D008235 9.5e-146 520.8 411 74.0
BolC1t05436H Brassica oleracea HOM05D007360 ORTHO05D008235 3.4e-135 485.7 411 72.5
A01p42170 Brassica napus HOM05D007360 ORTHO05D008235 6.2e-129 464.9 414 71.5
BraA01t04285Z Brassica rapa HOM05D007360 ORTHO05D008235 3.1e-128 462.6 414 70.8
Aa31LG3G2160 Aethionema arabicum HOM05D007360 ORTHO05D008235 1.7e-94 350.5 320 64.7
THA.LOC104816327 Tarenaya hassleriana HOM05D007360 ORTHO05D008235 3.7e-81 306.2 420 53.8
Cpa.g.sc174.13 Carica papaya HOM05D007360 ORTHO05D008235 1.2e-55 221.5 449 41.2
Thecc.05G055700 Theobroma cacao HOM05D007360 ORTHO05D008235 8.0e-52 208.8 433 41.1
COL.COLO4_27062 Corchorus olitorius HOM05D007360 ORTHO05D008235 2.3e-51 207.2 431 40.4
Atru.chr8.1896 Acer truncatum HOM05D007360 ORTHO05D008235 3.1e-51 206.8 437 41.2
Duzib128G1437 Durio zibethinus HOM05D007360 ORTHO05D008235 8.9e-51 205.3 427 42.6
QL07p045105 Quercus lobata HOM05D007360 ORTHO05D008235 2.0e-50 204.1 437 40.3
vmacro20051 Vaccinium macrocarpon HOM05D007360 ORTHO05D008235 1.0e-46 191.8 429 40.3
Cfa017520 Carpinus fangiana HOM05D007360 ORTHO05D008235 1.3e-46 191.4 457 37.6
CiPaw.09G179100 Carya illinoinensis HOM05D007360 ORTHO05D008235 2.3e-46 190.7 431 39.0
CsaV3_3G035660 Cucumis sativus L. HOM05D007360 ORTHO05D008235 6.6e-46 189.1 451 38.4
Potri.006G130600 Populus trichocarpa HOM05D007360 ORTHO05D008235 1.5e-45 188.0 430 38.6
ClCG10G020460 Citrullus lanatus HOM05D007360 ORTHO05D008235 2.1e-44 184.1 460 39.1
Haze_20630 Corylus avellana HOM05D007360 ORTHO05D008235 2.8e-44 183.7 470 37.2
PGR004G0580 Punica granatum HOM05D007360 ORTHO05D008235 6.2e-44 182.6 440 37.3
Duzib093G0075 Durio zibethinus HOM05D007360 ORTHO05D008235 1.4e-43 181.4 383 40.5
Sc20g0005120 Simmondsia chinensis HOM05D007360 ORTHO05D008235 1.4e-43 181.4 434 39.4
Prupe.6G240300 Prunus persica HOM05D007360 ORTHO05D008235 1.2e-42 178.3 440 38.6
Gohir.D04G115000 Gossypium hirsutum HOM05D007360 ORTHO05D008235 4.9e-41 172.9 424 36.8
Gorai.009G419600 Gossypium raimondii HOM05D007360 ORTHO05D008235 4.9e-41 172.9 424 36.8
Gohir.A04G075900 Gossypium hirsutum HOM05D007360 ORTHO05D008235 1.9e-40 171.0 424 37.0
TWI74G1131 Tripterygium wilfordii HOM05D007360 ORTHO05D008235 4.1e-40 169.9 436 37.2
TAR633G0942 Trochodendron aralioides HOM05D007360 ORTHO05D008235 3.5e-39 166.8 391 39.4
MELO3C009325.2 Cucumis melo HOM05D007360 ORTHO05D008235 1.5e-37 161.4 407 37.8
Solyc09g007460.4 Solanum lycopersicum HOM05D007360 ORTHO05D008235 1.5e-37 161.4 393 37.2
Sopen09g002350 Solanum pennellii HOM05D007360 ORTHO05D008235 1.5e-37 161.4 389 37.5
Nitab4.5_0000669g0130 Nicotiana tabacum HOM05D007360 ORTHO05D008235 9.5e-37 158.7 463 35.4
Actinidia19699 Actinidia chinensis HOM05D007360 ORTHO05D008235 2.1e-36 157.5 473 35.5
Nitab4.5_0006156g0020 Nicotiana tabacum HOM05D007360 ORTHO05D008235 2.1e-36 157.5 385 38.2
Dinv35727 Davidia involucrata HOM05D007360 ORTHO05D008235 4.7e-36 156.4 465 36.1
ECA233G0563 Erigeron canadensis HOM05D007360 ORTHO05D008235 1.4e-35 154.8 382 39.3
Sopen00g009140 Solanum pennellii HOM05D007360 ORTHO05D008235 1.8e-35 154.5 262 43.9
Manes.08G004115 Manihot esculenta HOM05D007360 ORTHO05D008235 3.1e-35 153.7 411 37.0
Lsat_1_v5_gn_6_30100 Lactuca sativa HOM05D007360 ORTHO05D008235 5.2e-35 152.9 408 37.7
CANSAT80G2624 Cannabis sativa HOM05D007360 ORTHO05D008235 8.9e-35 152.1 440 35.2
PGSC0003DMG400001741 Solanum tuberosum HOM05D007360 ORTHO05D008235 2.0e-34 151.0 387 37.5
Peaxi162Scf00005g04017 Petunia axillaris HOM05D007360 ORTHO05D008235 2.6e-34 150.6 425 35.3
EL10Ac7g16510 Beta vulgaris HOM05D007360 ORTHO05D008235 3.4e-34 150.2 424 34.7
FvH4_6g15500 Fragaria vesca HOM05D007360 ORTHO05D008235 7.5e-34 149.1 441 34.0
Manes.12G045236 Manihot esculenta HOM05D007360 ORTHO05D008235 6.4e-33 146.0 392 37.0
Ciclev10011834m.g Citrus clementina HOM05D007360 ORTHO05D008235 1.4e-32 144.8 441 34.5
Migut.L01667 Erythranthe guttata HOM05D007360 ORTHO05D008235 9.2e-32 142.1 414 36.2
Hma1.2p1_0111F.1_g053990 Hydrangea macrophylla HOM05D007360 ORTHO05D008235 9.2e-32 142.1 428 35.0
Oeu060091.1 Olea europaea HOM05D007360 ORTHO05D008235 1.2e-31 141.7 333 40.2
Glyma.10G050400 Glycine max HOM05D007360 ORTHO05D008235 2.1e-31 141.0 424 36.6
Lalb_Chr02g0156301 Lupinus albus HOM05D007360 ORTHO05D008235 3.5e-31 140.2 438 34.5
Manes.08G004132 Manihot esculenta HOM05D007360 ORTHO05D008235 6.0e-31 139.4 421 35.6
Phvul.007G164700 Phaseolus vulgaris HOM05D007360 ORTHO05D008235 6.6e-30 136.0 433 35.3
Glyma.13G137900 Glycine max HOM05D007360 ORTHO05D008235 2.5e-29 134.0 433 36.3
Manes.08G014114 Manihot esculenta HOM05D007360 ORTHO05D008235 2.5e-29 134.0 390 37.2
Nn2g13027 Nelumbo nucifera HOM05D007360 ORTHO05D008235 3.3e-29 133.7 399 34.1
FAN14G4542 Fragaria x ananassa HOM05D007360 ORTHO05D008235 4.3e-29 133.3 469 32.2
Lalb_Chr21g0314721 Lupinus albus HOM05D007360 ORTHO05D008235 4.3e-29 133.3 430 31.9
Manes.08G004103 Manihot esculenta HOM05D007360 ORTHO05D008235 6.2e-28 129.4 421 34.4
Manes.05G197400 Manihot esculenta HOM05D007360 ORTHO05D008235 1.1e-27 128.6 391 37.1
Manes.08G004112 Manihot esculenta HOM05D007360 ORTHO05D008235 1.1e-27 128.6 396 37.6
FAN09G4144 Fragaria x ananassa HOM05D007360 ORTHO05D008235 5.2e-27 126.3 248 41.9
Manes.08G004904 Manihot esculenta HOM05D007360 ORTHO05D008235 2.0e-26 124.4 386 34.2
Sabra06G0102600 Salix brachista HOM05D007360 ORTHO05D008235 2.6e-26 124.0 423 34.0
Cc06_g03670 Coffea canephora HOM05D007360 ORTHO05D008235 3.4e-26 123.6 477 31.7
SGA_v2.0_scaffold126G33907 Striga asiatica HOM05D007360 ORTHO05D008235 9.9e-26 122.1 420 31.9
Ah.08g211880 Amaranthus hybridus HOM05D007360 ORTHO05D008235 1.3e-25 121.7 296 38.2
Manes.08G004125 Manihot esculenta HOM05D007360 ORTHO05D008235 1.1e-24 118.6 391 35.5
RcHm_v2.0_Chr3g0469001 Rosa chinensis HOM05D007360 ORTHO05D008235 1.4e-24 118.2 406 33.5
Manes.08G004107 Manihot esculenta HOM05D007360 ORTHO05D008235 3.2e-24 117.1 406 35.2
FAN02G3036 Fragaria x ananassa HOM05D007360 ORTHO05D008235 2.1e-23 114.4 457 32.8
Manes.08G004118 Manihot esculenta HOM05D007360 ORTHO05D008235 6.0e-23 112.8 411 36.0
Lj5g0015354 Lotus japonicus HOM05D007360 ORTHO05D008235 3.0e-22 110.5 412 31.1
FAN05G5130 Fragaria x ananassa HOM05D007360 ORTHO05D008235 5.1e-22 109.8 449 33.4
Lj1g0018826 Lotus japonicus HOM05D007360 ORTHO05D008235 1.9e-21 107.8 222 41.0
Manes.08G004130 Manihot esculenta HOM05D007360 ORTHO05D008235 4.3e-21 106.7 348 34.2
DCAR_020845 Daucus carota HOM05D007360 ORTHO05D008235 9.6e-21 105.5 387 33.6
VMungo0720G0507 Vigna mungo HOM05D007360 ORTHO05D008235 8.1e-20 102.4 247 38.9
Sed0020725 Sechium edule HOM05D007360 ORTHO05D008235 9.9e-18 95.5 305 36.7
Aqoxy4G03227 Aquilegia oxysepala HOM05D007360 ORTHO05D008235 9.3e-16 89.0 372 31.2
Manes.08G004119 Manihot esculenta HOM05D007360 ORTHO05D008235 7.8e-15 85.9 284 34.5
Manes.05G196900 Manihot esculenta HOM05D007360 ORTHO05D008235 1.0e-14 85.5 234 35.9
MD04G1105400 Malus domestica HOM05D007360 ORTHO05D008235 3.3e-13 80.5 227 37.0
CSS0042376 Camellia sinensis var. sinensis HOM05D007360 ORTHO05D008235 1.3e-12 78.6 379 30.6
GSVIVG01025644001 Vitis vinifera HOM05D004499 ORTHO05D004928 6.2e-12 76.3 104 44.2
MSTRG.10303 Avicennia marina HOM05D007360 ORTHO05D008235 1.8e-11 74.7 304 32.2
HanXRQChr02g0051971 Helianthus annuus HOM05D007360 ORTHO05D008235 5.3e-11 73.2 281 32.0
Phvul.001G175350 Phaseolus vulgaris HOM05D007360 ORTHO05D008235 3.2e-08 63.9 208 35.1
HanXRQChr02g0051981 Helianthus annuus HOM05D007360 ORTHO05D008235 7.9e-07 59.3 113 39.8
MD12G1122600 Malus domestica HOM05D007360 ORTHO05D008235 5.1e-06 56.6 105 45.7


User provided reference genes

Program Settings