Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s0820 Capsella rubella HOM05D005207 ORTHO05D012773 5.4e-120 434.5 243 100.0
AL3G11550 Arabidopsis lyrata HOM05D005207 ORTHO05D012773 3.3e-53 212.6 195 58.5
AL777U10010 Arabidopsis lyrata HOM05D001049 ORTHO05D012773 3.7e-44 182.6 184 54.3
AL1G48230 Arabidopsis lyrata HOM05D005207 ORTHO05D012773 5.3e-43 178.7 196 51.5
AL1G25630 Arabidopsis lyrata HOM05D005207 ORTHO05D012773 1.5e-40 170.6 201 52.2
AT5G03495 Arabidopsis thaliana HOM05D005207 ORTHO05D012773 1.2e-29 134.4 172 44.8
AL6G12880 Arabidopsis lyrata HOM05D005207 ORTHO05D012773 2.6e-29 133.3 175 45.7
AL3G38420 Arabidopsis lyrata HOM05D005207 ORTHO05D012773 5.7e-29 132.1 175 44.6
AT5G03480 Arabidopsis thaliana HOM05D005207 ORTHO05D012773 2.2e-28 130.2 168 45.8
AL6G12890 Arabidopsis lyrata HOM05D005207 ORTHO05D012773 2.8e-28 129.8 203 42.9
AL6G12910 Arabidopsis lyrata HOM05D005207 ORTHO05D012773 4.8e-28 129.0 174 45.4
Carub.0006s0230 Capsella rubella HOM05D005207 ORTHO05D012773 1.8e-27 127.1 212 40.6
AT5G53700 Arabidopsis thaliana HOM05D005207 ORTHO05D012773 2.3e-25 120.2 224 36.6
Carub.0006s0326 Capsella rubella HOM05D005207 ORTHO05D012773 1.6e-23 114.0 198 37.9
BolC6t40070H Brassica oleracea HOM05D005207 ORTHO05D010629 2.8e-23 113.2 180 36.7
BolC8t52199H Brassica oleracea HOM05D008530 ORTHO05D011436 2.8e-20 103.2 179 38.5
Carub.0008s1399 Capsella rubella HOM05D005207 ORTHO05D012773 2.8e-20 103.2 201 32.8
A09p63000 Brassica napus HOM05D008530 ORTHO05D011436 3.7e-20 102.8 178 38.2
BcaB01g06024 Brassica carinata HOM05D005207 ORTHO05D010629 3.2e-19 99.8 172 34.3
BcaB01g06028 Brassica carinata HOM05D005207 ORTHO05D016117 3.2e-19 99.8 172 34.3
C03p03250 Brassica napus HOM05D005207 ORTHO05D016117 3.2e-19 99.8 172 34.9
C03p03300 Brassica napus HOM05D005207 ORTHO05D016117 3.2e-19 99.8 172 34.3
BolC3t12869H Brassica oleracea HOM05D005207 ORTHO05D016117 3.2e-19 99.8 172 34.9
BolC3t12873H Brassica oleracea HOM05D005207 ORTHO05D016117 3.2e-19 99.8 172 34.3
A03p02850 Brassica napus HOM05D005207 ORTHO05D016117 9.2e-19 98.2 172 33.7
BraA03t09649Z Brassica rapa HOM05D005207 ORTHO05D016117 9.2e-19 98.2 172 33.7
AL8G27750 Arabidopsis lyrata HOM05D005207 ORTHO05D012773 1.2e-18 97.8 168 39.9
AL8G28020 Arabidopsis lyrata HOM05D005207 ORTHO05D012773 1.2e-18 97.8 193 37.8
BcaB01g06000 Brassica carinata HOM05D005207 ORTHO05D010629 5.9e-18 95.5 176 34.1
BolC8t52203H Brassica oleracea HOM05D008530 ORTHO05D011436 7.8e-18 95.1 195 35.4
A03p02800 Brassica napus HOM05D005207 ORTHO05D011102 1.3e-17 94.4 180 37.8
C08p46590 Brassica napus HOM05D008530 ORTHO05D011436 1.3e-17 94.4 185 36.2
BraA03t09643Z Brassica rapa HOM05D005207 ORTHO05D011102 1.3e-17 94.4 180 37.8
A03p02860 Brassica napus HOM05D005207 ORTHO05D016117 2.9e-17 93.2 172 32.0
BraA03t09648Z Brassica rapa HOM05D005207 ORTHO05D016117 2.9e-17 93.2 172 32.0
BcaC07g42014 Brassica carinata HOM05D005207 ORTHO05D024328 1.1e-16 91.3 179 32.4
C08p50700 Brassica napus HOM05D005207 ORTHO05D024328 1.1e-16 91.3 179 32.4
BolC8t52598H Brassica oleracea HOM05D005207 ORTHO05D024328 1.1e-16 91.3 179 32.4
BcaC08g47266 Brassica carinata HOM05D005207 ORTHO05D010629 1.9e-16 90.5 177 36.2
C06p50330 Brassica napus HOM05D005207 ORTHO05D010629 1.9e-16 90.5 177 36.2
AL3G20250 Arabidopsis lyrata HOM05D005207 ORTHO05D011102 2.5e-16 90.1 183 34.4
A09p66540 Brassica napus HOM05D005207 ORTHO05D024328 2.5e-16 90.1 179 32.4
C06p50380 Brassica napus HOM05D005207 ORTHO05D010629 2.5e-16 90.1 177 36.2
C06p50420 Brassica napus HOM05D005207 ORTHO05D010629 2.5e-16 90.1 177 36.2
BraA09t41992Z Brassica rapa HOM05D005207 ORTHO05D024328 2.5e-16 90.1 179 32.4
BcaC07g41650 Brassica carinata HOM05D008530 ORTHO05D011436 7.3e-16 88.6 179 35.8
C08p46510 Brassica napus HOM05D008530 ORTHO05D011436 7.3e-16 88.6 179 35.8
A09p63120 Brassica napus HOM05D008530 ORTHO05D011436 9.5e-16 88.2 185 34.6
BraA09t41666Z Brassica rapa HOM05D008530 ORTHO05D011436 9.5e-16 88.2 185 35.1
A09p63050 Brassica napus HOM05D008530 ORTHO05D011436 1.2e-15 87.8 179 35.2
BolC3t13212H Brassica oleracea HOM05D005207 ORTHO05D011102 1.2e-15 87.8 170 38.2
BraA09t41658Z Brassica rapa HOM05D008530 ORTHO05D011436 1.2e-15 87.8 179 35.2
C03p03270 Brassica napus HOM05D005207 ORTHO05D016117 1.6e-15 87.4 173 31.8
BolC3t12870H Brassica oleracea HOM05D005207 ORTHO05D016117 1.6e-15 87.4 173 31.8
BcaC02g12854 Brassica carinata HOM05D005207 ORTHO05D010629 2.8e-15 86.7 167 32.3
C04p59240 Brassica napus HOM05D005207 ORTHO05D010629 3.6e-15 86.3 185 32.4
C06p50450 Brassica napus HOM05D005207 ORTHO05D010629 3.6e-15 86.3 178 36.5
BolC4t27435H Brassica oleracea HOM05D005207 ORTHO05D010629 3.6e-15 86.3 185 32.4
BraA07t31720Z Brassica rapa HOM05D005207 ORTHO05D010629 3.6e-15 86.3 177 35.6
A03p02820 Brassica napus HOM05D005207 ORTHO05D011102 6.1e-15 85.5 177 34.5
BraA03t09645Z Brassica rapa HOM05D005207 ORTHO05D011102 6.1e-15 85.5 177 34.5
A03p03410 Brassica napus HOM05D000033 ORTHO05D005368 8.0e-15 85.1 135 38.5
BraA03t09691Z Brassica rapa HOM05D000033 ORTHO05D005368 8.0e-15 85.1 135 38.5
BcaC05g26763 Brassica carinata HOM05D005207 ORTHO05D021650 1.4e-14 84.3 147 36.1
C03p02980 Brassica napus HOM05D005207 ORTHO05D039260 1.4e-14 84.3 176 30.1
A07p41910 Brassica napus HOM05D005207 ORTHO05D010629 1.8e-14 84.0 177 35.0
Carub.0006s0188 Capsella rubella HOM05D005207 ORTHO05D011102 1.8e-14 84.0 190 34.2
BcaB01g04188 Brassica carinata HOM05D005207 ORTHO05D011102 4.0e-14 82.8 184 35.3
BcaB06g28876 Brassica carinata HOM05D005207 ORTHO05D010629 4.0e-14 82.8 145 39.3
BcaB01g05983 Brassica carinata HOM05D005207 ORTHO05D039260 5.2e-14 82.4 167 30.5
BolC8t52194H Brassica oleracea HOM05D008530 ORTHO05D011436 5.2e-14 82.4 179 35.2
BcaB06g28378 Brassica carinata HOM05D005207 ORTHO05D010629 1.2e-13 81.3 172 33.7
AL3G20260 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 2.0e-13 80.5 196 31.1
BcaC01g05826 Brassica carinata HOM05D005207 ORTHO05D010629 2.0e-13 80.5 207 30.4
BcaB01g06006 Brassica carinata HOM05D005207 ORTHO05D010629 2.6e-13 80.1 181 30.4
BcaC07g41646 Brassica carinata HOM05D008530 ORTHO05D011436 2.6e-13 80.1 179 34.6
C08p46470 Brassica napus HOM05D008530 ORTHO05D011436 2.6e-13 80.1 179 34.6
A04p23300 Brassica napus HOM05D005207 ORTHO05D010629 5.8e-13 79.0 173 32.9
A04p30470 Brassica napus HOM05D005207 ORTHO05D010629 5.8e-13 79.0 210 30.0
A03p07940 Brassica napus HOM05D002922 ORTHO05D024472 7.5e-13 78.6 137 36.5
BraA04t18460Z Brassica rapa HOM05D005207 ORTHO05D010629 7.5e-13 78.6 210 30.0
BcaC05g26761 Brassica carinata HOM05D005207 ORTHO05D021650 1.3e-12 77.8 95 44.2
BcaB01g06007 Brassica carinata HOM05D005207 ORTHO05D011102 1.7e-12 77.4 164 31.1
BcaC05g26764 Brassica carinata HOM05D005207 ORTHO05D021650 1.7e-12 77.4 105 41.9
BolC8t52195H Brassica oleracea HOM05D008530 ORTHO05D032716 1.7e-12 77.4 174 35.1
BraA03t10119Z Brassica rapa HOM05D002922 ORTHO05D024472 1.7e-12 77.4 137 36.5
Thhalv10021355m.g Eutrema salsugineum HOM05D005207 ORTHO05D021650 3.7e-12 76.3 184 31.5
BraA04t17858Z Brassica rapa HOM05D005207 ORTHO05D010629 4.9e-12 75.9 173 31.8
BcaC07g41644 Brassica carinata HOM05D008530 ORTHO05D011436 8.3e-12 75.1 177 33.9
AL5G22900 Arabidopsis lyrata HOM05D025973 ORTHO05D012773 1.1e-11 74.7 62 64.5
Thhalv10026130m.g Eutrema salsugineum HOM05D008530 ORTHO05D011436 1.1e-11 74.7 192 29.2
BcaC02g07482 Brassica carinata HOM05D005207 ORTHO05D010629 2.4e-11 73.6 187 32.6
BcaC02g08006 Brassica carinata HOM05D005207 ORTHO05D010629 2.4e-11 73.6 172 32.6
C04p59510 Brassica napus HOM05D005207 ORTHO05D010629 2.4e-11 73.6 172 32.6
BolC4t27455H Brassica oleracea HOM05D005207 ORTHO05D010629 2.4e-11 73.6 172 32.6
BcaB01g05675 Brassica carinata HOM05D005207 ORTHO05D010629 4.1e-11 72.8 141 34.8
BolC9t59760H Brassica oleracea HOM05D005207 ORTHO05D011102 4.1e-11 72.8 73 49.3
BcaNung06579 Brassica carinata HOM05D005207 ORTHO05D011102 9.2e-11 71.6 97 43.3
BcaB08g37411 Brassica carinata HOM05D008530 ORTHO05D011436 1.2e-10 71.2 176 32.4
Aa31LG10G5000 Aethionema arabicum HOM05D002658 ORTHO05D003000 2.0e-10 70.5 177 30.5
BcaC08g47263 Brassica carinata HOM05D005207 ORTHO05D010629 2.7e-10 70.1 89 41.6
Sp1g35830 Schrenkiella parvula HOM05D002658 ORTHO05D003000 2.7e-10 70.1 185 27.6
AL6G14890 Arabidopsis lyrata HOM05D005207 ORTHO05D011102 3.5e-10 69.7 77 45.5
C04p59490 Brassica napus HOM05D005207 ORTHO05D010629 3.5e-10 69.7 172 31.4
BcaB01g05240 Brassica carinata HOM05D002922 ORTHO05D024472 4.6e-10 69.3 128 33.6
BcaC02g08027 Brassica carinata HOM05D005207 ORTHO05D010629 4.6e-10 69.3 183 29.0
C09p70090 Brassica napus HOM05D005207 ORTHO05D011102 4.6e-10 69.3 76 44.7
BolC9t59752H Brassica oleracea HOM05D005207 ORTHO05D011102 4.6e-10 69.3 76 44.7
CARHR038910 Cardamine hirsuta HOM05D002658 ORTHO05D003000 4.6e-10 69.3 176 26.7
Thhalv10014517m.g Eutrema salsugineum HOM05D005207 ORTHO05D011436 4.6e-10 69.3 86 45.3
Lalb_Chr10g0095021 Lupinus albus HOM05D002658 ORTHO05D003000 4.6e-10 69.3 173 28.3
C03p03220 Brassica napus HOM05D005207 ORTHO05D011102 6.0e-10 68.9 79 46.8
BcaC02g08008 Brassica carinata HOM05D005207 ORTHO05D010629 7.8e-10 68.6 172 30.2
A04p23290 Brassica napus HOM05D005207 ORTHO05D010629 7.8e-10 68.6 181 30.9
C03p09150 Brassica napus HOM05D002922 ORTHO05D024472 7.8e-10 68.6 128 33.6
BolC3t13412H Brassica oleracea HOM05D002922 ORTHO05D024472 7.8e-10 68.6 128 33.6
Carub.0008s1419 Capsella rubella HOM05D005207 ORTHO05D114602 7.8e-10 68.6 114 41.2
CSS0029052 Camellia sinensis var. sinensis HOM05D002658 ORTHO05D003000 1.0e-09 68.2 178 29.2
BcaC02g08007 Brassica carinata HOM05D005207 ORTHO05D010629 1.3e-09 67.8 173 30.1
BcaC02g08009 Brassica carinata HOM05D005207 ORTHO05D010629 1.3e-09 67.8 173 30.1
C04p59480 Brassica napus HOM05D005207 ORTHO05D010629 1.3e-09 67.8 173 30.1
C04p59500 Brassica napus HOM05D005207 ORTHO05D010629 1.3e-09 67.8 173 30.1
AL6G12860 Arabidopsis lyrata HOM05D005207 ORTHO05D012773 3.0e-09 66.6 82 40.2
BcaB08g34294 Brassica carinata HOM05D008530 ORTHO05D011436 3.0e-09 66.6 136 35.3
BcaC06g32383 Brassica carinata HOM05D005207 ORTHO05D011102 3.0e-09 66.6 71 45.1
BcaNung06578 Brassica carinata HOM05D005207 ORTHO05D011102 3.0e-09 66.6 131 34.4
CARHR064230 Cardamine hirsuta HOM05D005207 ORTHO05D010629 3.0e-09 66.6 124 34.7
Lj1g0013048 Lotus japonicus HOM05D002658 ORTHO05D003000 3.0e-09 66.6 188 26.1
AT1G72800 Arabidopsis thaliana HOM05D002658 ORTHO05D021408 3.9e-09 66.2 101 41.6
BcaC06g32380 Brassica carinata HOM05D005207 ORTHO05D011102 3.9e-09 66.2 76 44.7
C09p70110 Brassica napus HOM05D005207 ORTHO05D011102 3.9e-09 66.2 76 44.7
BolC9t59754H Brassica oleracea HOM05D005207 ORTHO05D011102 3.9e-09 66.2 76 44.7
BraA08t32458Z Brassica rapa HOM05D002658 ORTHO05D003000 3.9e-09 66.2 80 41.2
Carub.0006s0144 Capsella rubella HOM05D005207 ORTHO05D011102 3.9e-09 66.2 78 44.9
BcaB01g06058 Brassica carinata HOM05D005207 ORTHO05D039226 5.0e-09 65.9 130 36.2
A10p29730 Brassica napus HOM05D005207 ORTHO05D011102 5.0e-09 65.9 76 42.1
BraA10t45015Z Brassica rapa HOM05D005207 ORTHO05D011102 5.0e-09 65.9 76 42.1
AL6G15310 Arabidopsis lyrata HOM05D005207 ORTHO05D011102 6.6e-09 65.5 78 44.9
C04p68620 Brassica napus HOM05D005207 ORTHO05D010629 6.6e-09 65.5 111 35.1
BolC4t28368H Brassica oleracea HOM05D005207 ORTHO05D010629 6.6e-09 65.5 111 35.1
Carub.0006s0189 Capsella rubella HOM05D005207 ORTHO05D011102 6.6e-09 65.5 82 41.5
AL6G14810 Arabidopsis lyrata HOM05D001907 ORTHO05D011102 8.6e-09 65.1 103 38.8
BcaC07g41758 Brassica carinata HOM05D004937 ORTHO05D006414 8.6e-09 65.1 174 34.5
BolC8t52334H Brassica oleracea HOM05D008530 ORTHO05D011436 8.6e-09 65.1 174 34.5
Os08g0192900 Oryza sativa ssp. japonica HOM05D002658 ORTHO05D003000 1.1e-08 64.7 179 27.9
BcaC07g41583 Brassica carinata HOM05D008530 ORTHO05D011436 1.5e-08 64.3 81 44.4
A09p24010 Brassica napus HOM05D002922 ORTHO05D021868 1.5e-08 64.3 79 41.8
C03p02970 Brassica napus HOM05D005207 ORTHO05D011102 1.5e-08 64.3 86 44.2
C08p46990 Brassica napus HOM05D008530 ORTHO05D011436 1.5e-08 64.3 175 35.4
BolC8t52236H Brassica oleracea HOM05D008530 ORTHO05D011436 1.5e-08 64.3 175 35.4
BraA09t38003Z Brassica rapa HOM05D002922 ORTHO05D021868 1.5e-08 64.3 79 41.8
BraA10t45014Z Brassica rapa HOM05D005207 ORTHO05D011102 1.5e-08 64.3 72 45.8
C08p04580 Brassica napus HOM05D002658 ORTHO05D003000 1.9e-08 63.9 80 38.8
AL1G55750 Arabidopsis lyrata HOM05D002658 ORTHO05D003000 2.5e-08 63.5 188 23.9
BolC6t35492H Brassica oleracea HOM05D002658 ORTHO05D003000 2.5e-08 63.5 172 27.9
Glyma.09G281700 Glycine max HOM05D002658 ORTHO05D003000 2.5e-08 63.5 173 26.6
BcaB06g29180 Brassica carinata HOM05D005207 ORTHO05D010629 3.3e-08 63.2 92 39.1
AL1G48290 Arabidopsis lyrata HOM05D000060 ORTHO05D010807 4.3e-08 62.8 88 39.8
A06p04130 Brassica napus HOM05D000335 ORTHO05D003000 4.3e-08 62.8 177 26.6
Glyma.20G004000 Glycine max HOM05D002658 ORTHO05D003000 4.3e-08 62.8 173 27.2
A06p04110 Brassica napus HOM05D002658 ORTHO05D003000 5.6e-08 62.4 201 27.4
BraA06t23617Z Brassica rapa HOM05D002658 ORTHO05D003000 5.6e-08 62.4 201 27.4
AL2G32480 Arabidopsis lyrata HOM05D002658 ORTHO05D021408 7.3e-08 62.0 97 41.2
AL6G14750 Arabidopsis lyrata HOM05D005207 ORTHO05D011102 7.3e-08 62.0 79 41.8
BcaB02g11292 Brassica carinata HOM05D002658 ORTHO05D003000 7.3e-08 62.0 172 26.7
BcaC08g43092 Brassica carinata HOM05D002658 ORTHO05D003000 1.2e-07 61.2 172 27.3
C06p03520 Brassica napus HOM05D002658 ORTHO05D003000 1.2e-07 61.2 172 27.3
BraA09t41789Z Brassica rapa HOM05D008530 ORTHO05D011436 1.2e-07 61.2 173 34.1
Thhalv10011361m.g Eutrema salsugineum HOM05D002658 ORTHO05D003000 1.2e-07 61.2 82 40.2
AL4G36910 Arabidopsis lyrata HOM05D008530 ORTHO05D011436 1.6e-07 60.8 187 30.5
AT3G09160 Arabidopsis thaliana HOM05D005207 ORTHO05D011102 1.6e-07 60.8 73 45.2
A08p04310 Brassica napus HOM05D002658 ORTHO05D003000 2.1e-07 60.5 91 35.2
BraA09t42032Z Brassica rapa HOM05D002922 ORTHO05D017209 2.1e-07 60.5 95 36.8
THA.LOC104810678 Tarenaya hassleriana HOM05D002658 ORTHO05D003000 2.1e-07 60.5 176 24.4
Carub.0003s1839 Capsella rubella HOM05D002658 ORTHO05D003000 2.8e-07 60.1 169 28.4
CARHR061650 Cardamine hirsuta HOM05D005207 ORTHO05D010629 2.8e-07 60.1 69 43.5
Mapoly0084s0037 Marchantia polymorpha HOM05D003897 ORTHO05D005095 2.8e-07 60.1 165 26.1
BcaC06g32559 Brassica carinata HOM05D005207 ORTHO05D011102 3.6e-07 59.7 76 43.4
BcaB06g28377 Brassica carinata HOM05D005207 ORTHO05D010629 6.2e-07 58.9 78 39.7
BcaNung01579 Brassica carinata HOM05D005207 ORTHO05D010629 6.2e-07 58.9 75 40.0
BolC4t27457H Brassica oleracea HOM05D005207 ORTHO05D010629 6.2e-07 58.9 165 28.5
THA.LOC104820414 Tarenaya hassleriana HOM05D002658 ORTHO05D003000 6.2e-07 58.9 153 28.1
BcaC04g21513 Brassica carinata HOM05D002922 ORTHO05D021868 8.0e-07 58.5 80 38.8
A05p20830 Brassica napus HOM05D002658 ORTHO05D003000 8.0e-07 58.5 73 39.7
BraA05t20989Z Brassica rapa HOM05D002658 ORTHO05D003000 8.0e-07 58.5 73 39.7
BcaB07g33701 Brassica carinata HOM05D002658 ORTHO05D003000 1.8e-06 57.4 187 25.7
BcaC05g27545 Brassica carinata HOM05D002658 ORTHO05D003000 1.8e-06 57.4 73 38.4
C05p35300 Brassica napus HOM05D002658 ORTHO05D003000 1.8e-06 57.4 73 38.4
BolC5t32244H Brassica oleracea HOM05D002658 ORTHO05D003000 1.8e-06 57.4 73 38.4
Ah.01g012180 Amaranthus hybridus HOM05D002658 ORTHO05D003000 2.3e-06 57.0 148 29.7
C04p66560 Brassica napus HOM05D005207 ORTHO05D041593 2.3e-06 57.0 77 39.0
BolC4t28158H Brassica oleracea HOM05D005207 ORTHO05D041593 2.3e-06 57.0 77 39.0
BcaB04g17378 Brassica carinata HOM05D002658 ORTHO05D003000 3.1e-06 56.6 84 36.9
A05p31000 Brassica napus HOM05D002658 ORTHO05D003000 3.1e-06 56.6 175 28.6
Aa31LG8G11830 Aethionema arabicum HOM05D005207 ORTHO05D011102 5.2e-06 55.8 68 44.1
HPP92_026555 Vanilla planifolia HOM05D002658 ORTHO05D003000 6.8e-06 55.5 147 27.2
HPP92_026528 Vanilla planifolia HOM05D002658 ORTHO05D003000 8.9e-06 55.1 142 27.5


User provided reference genes

Program Settings