Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s0799 Capsella rubella HOM05D004264 ORTHO05D004680 1.4e-102 376.3 194 100.0
AL3G19870 Arabidopsis lyrata HOM05D004264 ORTHO05D004680 1.7e-87 326.2 202 86.1
AT3G08880 Arabidopsis thaliana HOM05D004264 ORTHO05D004680 9.1e-86 320.5 202 84.2
CARHR083200 Cardamine hirsuta HOM05D004264 ORTHO05D004680 1.5e-80 303.1 200 79.5
Sp3g07270 Schrenkiella parvula HOM05D004264 ORTHO05D004680 9.7e-80 300.4 202 79.7
Thhalv10021618m.g Eutrema salsugineum HOM05D004264 ORTHO05D004680 3.8e-76 288.5 194 78.4
BcaC09g47997 Brassica carinata HOM05D004264 ORTHO05D004680 3.7e-71 271.9 194 73.2
BcaC09g48040 Brassica carinata HOM05D004264 ORTHO05D004680 4.8e-71 271.6 194 73.2
BNapus_Darmor_BZH_scaffold_167p00190 Brassica napus HOM05D004264 ORTHO05D004680 4.8e-71 271.6 194 73.2
BraA01t04327Z Brassica rapa HOM05D004264 ORTHO05D004680 1.2e-66 256.9 194 70.6
BcaB04g18563 Brassica carinata HOM05D004264 ORTHO05D004680 8.3e-63 244.2 191 68.6
THA.LOC104816187 Tarenaya hassleriana HOM05D004264 ORTHO05D004680 2.7e-58 229.2 202 58.4
THA.LOC104827057 Tarenaya hassleriana HOM05D004264 ORTHO05D004680 2.6e-56 222.6 201 57.2
AL6G10480 Arabidopsis lyrata HOM05D004264 ORTHO05D004680 9.8e-56 220.7 202 56.9
Carub.0006s0026 Capsella rubella HOM05D004264 ORTHO05D004680 1.1e-54 217.2 202 56.9
C03p43950 Brassica napus HOM05D004264 ORTHO05D004680 1.7e-52 209.9 185 66.5
AT5G01570 Arabidopsis thaliana HOM05D004264 ORTHO05D004680 9.2e-46 187.6 193 52.8
Cfa017136 Carpinus fangiana HOM05D004264 ORTHO05D004680 1.6e-45 186.8 199 47.2
Atru.chr8.2305 Acer truncatum HOM05D004264 ORTHO05D004680 2.0e-45 186.4 202 46.5
TWI74G1571 Tripterygium wilfordii HOM05D004264 ORTHO05D004680 4.6e-45 185.3 202 47.0
CiPaw.09G213400 Carya illinoinensis HOM05D004264 ORTHO05D004680 1.9e-43 179.9 202 45.5
Gorai.002G265700 Gossypium raimondii HOM05D004264 ORTHO05D004680 4.3e-43 178.7 194 44.8
ClCG04G006790 Citrullus lanatus HOM05D004264 ORTHO05D004680 7.3e-43 177.9 201 46.3
Solyc04g072210.4 Solanum lycopersicum HOM05D004264 ORTHO05D004680 9.5e-43 177.6 199 44.7
COL.COLO4_14480 Corchorus olitorius HOM05D004264 ORTHO05D004680 6.2e-42 174.9 194 44.8
Thecc.05G009200 Theobroma cacao HOM05D004264 ORTHO05D004680 1.4e-41 173.7 202 43.6
CsaV3_4G026470 Cucumis sativus L. HOM05D004264 ORTHO05D004680 3.1e-41 172.6 199 42.7
Dinv08428 Davidia involucrata HOM05D004264 ORTHO05D008966 5.2e-41 171.8 201 45.8
Nn8g40771 Nelumbo nucifera HOM05D004264 ORTHO05D004680 1.2e-40 170.6 197 44.2
Gohir.D01G219000 Gossypium hirsutum HOM05D004264 ORTHO05D004680 2.0e-40 169.9 202 42.6
Manes.09G110101 Manihot esculenta HOM05D004264 ORTHO05D004680 1.7e-39 166.8 202 42.1
MD04G1163700 Malus domestica HOM05D004264 ORTHO05D004680 2.2e-39 166.4 182 43.4
Glyma.07G154451 Glycine max HOM05D004264 ORTHO05D004680 1.1e-38 164.1 195 43.1
Glyma.18G205200 Glycine max HOM05D004264 ORTHO05D004680 1.1e-38 164.1 195 42.6
Gohir.A01G229100 Gossypium hirsutum HOM05D004264 ORTHO05D004680 1.1e-38 164.1 202 41.6
TAR623G1256 Trochodendron aralioides HOM05D004264 ORTHO05D004680 1.1e-38 164.1 199 41.2
Duzib093G0558 Durio zibethinus HOM05D004264 ORTHO05D004680 3.2e-38 162.5 199 41.7
PGR004G2045 Punica granatum HOM05D004264 ORTHO05D004680 3.2e-38 162.5 199 43.2
Hma1.2p1_0479F.1_g161540 Hydrangea macrophylla HOM05D004264 ORTHO05D004680 4.1e-38 162.2 199 42.2
Sed0006342 Sechium edule HOM05D004264 ORTHO05D004680 4.1e-38 162.2 199 40.2
Aa31LG1G23180 Aethionema arabicum HOM05D004264 ORTHO05D004680 7.0e-38 161.4 163 54.6
Actinidia29078 Actinidia chinensis HOM05D004264 ORTHO05D004680 1.2e-37 160.6 200 41.0
CANSAT35G1133 Cannabis sativa HOM05D004264 ORTHO05D004680 2.7e-37 159.5 198 40.4
Duzib106G1969 Durio zibethinus HOM05D004264 ORTHO05D004680 3.5e-37 159.1 199 41.7
FAN09G4226 Fragaria x ananassa HOM05D004264 ORTHO05D004680 1.0e-36 157.5 198 38.9
Potri.016G122350 Populus trichocarpa HOM05D004264 ORTHO05D004680 1.7e-36 156.8 202 39.6
MD12G1177600 Malus domestica HOM05D004264 ORTHO05D004680 2.3e-36 156.4 187 39.6
Actinidia11558 Actinidia chinensis HOM05D004264 ORTHO05D004680 3.9e-36 155.6 198 39.9
FAN05G3264 Fragaria x ananassa HOM05D004264 ORTHO05D004680 3.9e-36 155.6 198 38.9
FAN05G1725 Fragaria x ananassa HOM05D004264 ORTHO05D004680 5.0e-36 155.2 198 38.9
FAN05G1746 Fragaria x ananassa HOM05D004264 ORTHO05D004680 5.0e-36 155.2 198 38.9
VMungo1383G0816 Vigna mungo HOM05D004264 ORTHO05D004680 5.0e-36 155.2 197 40.1
PSO801G0087 Papaver somniferum HOM05D004264 ORTHO05D004680 6.6e-36 154.8 200 41.0
Hund14916 Selenicereus undatus HOM05D004264 ORTHO05D004680 6.6e-36 154.8 200 38.5
FAN02G3507 Fragaria x ananassa HOM05D004264 ORTHO05D004680 1.5e-35 153.7 198 38.4
PSO339G3729 Papaver somniferum HOM05D004264 ORTHO05D004680 1.5e-35 153.7 200 40.5
ECA233G6002 Erigeron canadensis HOM05D004264 ORTHO05D004680 3.3e-35 152.5 184 40.8
Lalb_Chr01g0023271 Lupinus albus HOM05D004264 ORTHO05D004680 3.1e-33 146.0 190 37.9
Medtr1g100900 Medicago truncatula HOM05D004264 ORTHO05D004680 3.1e-33 146.0 199 40.7
Lsat_1_v5_gn_6_104820 Lactuca sativa HOM05D004264 ORTHO05D004680 4.0e-33 145.6 187 39.6
BcaB04g18568 Brassica carinata HOM05D004264 ORTHO05D004680 5.2e-33 145.2 123 65.9
BcaC01g04201 Brassica carinata HOM05D004264 ORTHO05D004680 6.8e-33 144.8 134 61.9
DCAR_015367 Daucus carota HOM05D004264 ORTHO05D004680 6.8e-33 144.8 199 40.7
Lj3g0014192 Lotus japonicus HOM05D004264 ORTHO05D004680 1.5e-32 143.7 199 38.7
BolC1t05486H Brassica oleracea HOM05D004264 ORTHO05D004680 3.4e-32 142.5 107 71.0
MBI10_g27417_MAGBIO Magnolia biondii HOM05D004264 ORTHO05D004680 7.5e-32 141.4 187 38.5
Phvul.008G094300 Phaseolus vulgaris HOM05D004264 ORTHO05D004680 2.4e-30 136.3 214 35.0
VMungo1383G0682 Vigna mungo HOM05D004264 ORTHO05D004680 7.8e-29 131.3 271 30.6
Psat3g124240 Pisum sativum HOM05D004264 ORTHO05D004680 1.1e-27 127.5 199 36.7
SEGI_36861 Sequoiadendron giganteum HOM05D004264 ORTHO05D004680 4.3e-27 125.6 194 31.4
Cc05_g01720 Coffea canephora HOM05D004264 ORTHO05D004680 1.2e-24 117.5 187 34.8
C03p54850 Brassica napus HOM05D004264 ORTHO05D004680 1.5e-24 117.1 103 63.1
BcaC04g20357 Brassica carinata HOM05D004264 ORTHO05D004680 2.6e-24 116.3 102 64.7
BcaNung00021 Brassica carinata HOM05D004264 ORTHO05D004680 9.9e-24 114.4 103 65.0
A03p36330 Brassica napus HOM05D004264 ORTHO05D004680 9.9e-24 114.4 102 63.7
BraA03t12802Z Brassica rapa HOM05D004264 ORTHO05D004680 9.9e-24 114.4 102 64.7
EL10Ac5g12510 Beta vulgaris HOM05D004264 ORTHO05D004680 6.4e-23 111.7 192 32.8
A03p61420 Brassica napus HOM05D004264 ORTHO05D004680 1.4e-22 110.5 102 62.7
Ah.12g058940 Amaranthus hybridus HOM05D004264 ORTHO05D004680 1.9e-22 110.2 190 33.7
BcaB05g23097 Brassica carinata HOM05D004264 ORTHO05D004680 1.9e-22 110.2 102 60.8
AUR62030782 Chenopodium quinoa HOM05D004264 ORTHO05D004680 3.2e-22 109.4 191 30.9
AUR62030512 Chenopodium quinoa HOM05D004264 ORTHO05D004680 1.2e-21 107.5 191 31.4
Peaxi162Scf00522g00315 Petunia axillaris HOM05D004264 ORTHO05D004680 2.1e-21 106.7 135 40.7
Zm00001eb068100 Zea mays HOM05D004264 ORTHO05D004680 3.5e-21 105.9 190 32.1
Sabra16G0118000 Salix brachista HOM05D004264 ORTHO05D004680 4.6e-21 105.5 186 32.3
QL07p034201 Quercus lobata HOM05D004264 ORTHO05D004680 7.8e-21 104.8 106 52.8
MBI03_g10315_MAGBIO Magnolia biondii HOM05D004264 ORTHO05D004680 6.6e-20 101.7 178 33.1
RcHm_v2.0_Chr3g0462171 Rosa chinensis HOM05D004264 ORTHO05D004680 7.3e-19 98.2 86 47.7
FvH4_6g10921 Fragaria vesca HOM05D004264 ORTHO05D004680 2.1e-18 96.7 86 46.5
Haze_21059 Corylus avellana HOM05D004264 ORTHO05D004680 4.7e-18 95.5 106 50.0
Rhsim05G0223700 Rhododendron simsii HOM05D004264 ORTHO05D004680 1.1e-17 94.4 91 45.1
unitig_0.g2545 Utricularia gibba HOM05D004264 ORTHO05D004680 1.2e-16 90.9 92 44.6
Oeu005191.1 Olea europaea HOM05D004264 ORTHO05D004680 1.5e-16 90.5 57 64.9
Zm00001eb423320 Zea mays HOM05D004264 ORTHO05D004680 2.6e-16 89.7 163 31.9
Prupe.6G283000 Prunus persica HOM05D004264 ORTHO05D004680 7.6e-16 88.2 106 45.3
GSVIVG01030301001 Vitis vinifera HOM05D004264 ORTHO05D004680 1.7e-15 87.0 104 43.3
Ciclev10013172m.g Citrus clementina HOM05D004264 ORTHO05D004680 6.4e-15 85.1 104 40.4
arahy.Tifrunner.gnm1.ann1.IC5F1T Arachis hypogaea HOM05D004264 ORTHO05D004680 1.9e-14 83.6 81 45.7
Sc09g0006620 Simmondsia chinensis HOM05D004264 ORTHO05D004680 4.2e-14 82.4 134 37.3
arahy.Tifrunner.gnm1.ann1.G0I7HS Arachis hypogaea HOM05D004264 ORTHO05D004680 7.1e-14 81.6 81 44.4
Aqoxy3G03064 Aquilegia oxysepala HOM05D004264 ORTHO05D004680 9.3e-14 81.3 92 33.7
DCAR_018676 Daucus carota HOM05D004264 ORTHO05D004680 9.3e-14 81.3 106 44.3
PGSC0003DMG400031135 Solanum tuberosum HOM05D004264 ORTHO05D004680 9.3e-14 81.3 57 56.1
HanXRQChr13g0390251 Helianthus annuus HOM05D004264 ORTHO05D004680 1.6e-13 80.5 62 53.2
VMungo1215G3396 Vigna mungo HOM05D004264 ORTHO05D004680 3.5e-13 79.3 57 52.6
A03p65180 Brassica napus HOM05D007568 ORTHO05D009779 6.0e-13 78.6 72 63.9
Potri.012G107200 Populus trichocarpa HOM05D004264 ORTHO05D004680 6.0e-13 78.6 60 55.0
Sopen04g028370 Solanum pennellii HOM05D004264 ORTHO05D004680 7.8e-13 78.2 106 40.6
TPR.G1155 Trifolium pratense HOM05D004264 ORTHO05D004680 1.0e-12 77.8 66 50.0
RcHm_v2.0_Chr3g0462181 Rosa chinensis HOM05D004264 ORTHO05D004680 1.3e-12 77.4 106 41.5
Eucgr.G00894 Eucalyptus grandis HOM05D004264 ORTHO05D004680 1.7e-12 77.0 99 41.4
A03p65190 Brassica napus HOM05D024600 ORTHO05D004680 2.3e-12 76.6 63 68.3
Ca_07679_v3 Cicer arietinum L. HOM05D004264 ORTHO05D004680 3.0e-12 76.3 56 53.6
A07p04740 Brassica napus HOM05D004264 ORTHO05D004680 3.9e-12 75.9 72 62.5
BraA07t28261Z Brassica rapa HOM05D004264 ORTHO05D004680 3.9e-12 75.9 72 62.5
vmacro20314 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 3.9e-12 75.9 106 39.6
Gohir.D11G227700 Gossypium hirsutum HOM05D004264 ORTHO05D004680 5.1e-12 75.5 104 38.5
Rhsim05G0223600 Rhododendron simsii HOM05D004264 ORTHO05D004680 5.1e-12 75.5 106 38.7
SEGI_24150 Sequoiadendron giganteum HOM05D004264 ORTHO05D004680 6.6e-12 75.1 87 33.3
CAN.G564.4 Capsicum annuum HOM05D004264 ORTHO05D004680 8.7e-12 74.7 157 30.6
HanXRQChr02g0036821 Helianthus annuus HOM05D004264 ORTHO05D004680 8.7e-12 74.7 61 47.5
A03p36320 Brassica napus HOM05D024600 ORTHO05D004680 1.1e-11 74.3 69 63.8
Cpa.g.sc120.22 Carica papaya HOM05D004264 ORTHO05D004680 1.1e-11 74.3 110 40.0
CSS0010779 Camellia sinensis var. sinensis HOM05D004264 ORTHO05D004680 1.9e-11 73.6 74 43.2
Haze_21060 Corylus avellana HOM05D004264 ORTHO05D004680 1.9e-11 73.6 58 51.7
Gohir.D10G240300 Gossypium hirsutum HOM05D004264 ORTHO05D004680 1.9e-11 73.6 104 38.5
Gorai.011G276000 Gossypium raimondii HOM05D004264 ORTHO05D004680 2.5e-11 73.2 104 38.5
MELO3C026013.2 Cucumis melo HOM05D004264 ORTHO05D004680 3.3e-11 72.8 96 39.6
A06p35970 Brassica napus HOM05D004264 ORTHO05D004680 4.3e-11 72.4 106 47.2
unitig_88.g27662 Utricularia gibba HOM05D004264 ORTHO05D004680 9.6e-11 71.2 203 26.6
HanXRQChr13g0390241 Helianthus annuus HOM05D004264 ORTHO05D004680 2.1e-10 70.1 99 38.4
vmacro05226 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 2.1e-10 70.1 106 35.8
vmacro05245 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 2.1e-10 70.1 106 35.8
DCAR_018675 Daucus carota HOM05D004264 ORTHO05D004680 2.8e-10 69.7 58 53.4
FAN14G2539 Fragaria x ananassa HOM05D004264 ORTHO05D004680 2.8e-10 69.7 106 36.8
HanXRQChr02g0036811 Helianthus annuus HOM05D004264 ORTHO05D004680 2.8e-10 69.7 104 38.5
BraA07t28331Z Brassica rapa HOM05D004264 ORTHO05D004680 4.8e-10 68.9 67 59.7
A02p28890 Brassica napus HOM05D004264 ORTHO05D004680 6.2e-10 68.6 73 58.9
PSO782G0806 Papaver somniferum HOM05D004264 ORTHO05D004680 8.1e-10 68.2 66 48.5
A05p35220 Brassica napus HOM05D024600 ORTHO05D004680 1.1e-09 67.8 58 62.1
FvH4_6g10920 Fragaria vesca HOM05D004264 ORTHO05D004680 1.1e-09 67.8 106 35.8
MSTRG.5553 Avicennia marina HOM05D004264 ORTHO05D004680 1.4e-09 67.4 104 37.5
C09p21930 Brassica napus HOM05D024600 ORTHO05D004680 1.4e-09 67.4 58 62.1
BolC9t57329H Brassica oleracea HOM05D004264 ORTHO05D004680 1.4e-09 67.4 72 59.7
Gorai.004G074900 Gossypium raimondii HOM05D004264 ORTHO05D004680 2.4e-09 66.6 121 34.7
Gohir.D12G051300 Gossypium hirsutum HOM05D004264 ORTHO05D004680 1.5e-08 63.9 96 35.4
Aqoxy3G03065 Aquilegia oxysepala HOM05D004264 ORTHO05D004680 2.0e-08 63.5 99 35.4
Migut.J00116 Erythranthe guttata HOM05D004264 ORTHO05D004680 2.0e-08 63.5 57 50.9
Oeu041877.1 Olea europaea HOM05D004264 ORTHO05D004680 2.0e-08 63.5 52 48.1
Oeu041878.1 Olea europaea HOM05D004264 ORTHO05D004680 2.0e-08 63.5 52 48.1
Gorai.004G095600 Gossypium raimondii HOM05D004264 ORTHO05D004680 2.6e-08 63.2 108 34.3
BolC3t16664H Brassica oleracea HOM05D004264 ORTHO05D004680 4.5e-08 62.4 35 85.7
Gohir.D04G142200 Gossypium hirsutum HOM05D004264 ORTHO05D004680 5.8e-08 62.0 112 33.9
Gohir.D01G029100 Gossypium hirsutum HOM05D004264 ORTHO05D004680 7.6e-08 61.6 101 33.7
A05p35200 Brassica napus HOM05D004264 ORTHO05D004680 1.3e-07 60.8 48 72.9
TAR209G0008 Trochodendron aralioides HOM05D004264 ORTHO05D004680 1.3e-07 60.8 105 30.5
Cpa.g.sc82.40 Carica papaya HOM05D004264 ORTHO05D004680 3.8e-07 59.3 87 37.9
Gorai.011G076200 Gossypium raimondii HOM05D004264 ORTHO05D004680 3.8e-07 59.3 73 38.4
SEGI_29872 Sequoiadendron giganteum HOM05D004264 ORTHO05D004680 3.8e-07 59.3 94 33.0
BolC9t57328H Brassica oleracea HOM05D024600 ORTHO05D004680 4.9e-07 58.9 63 58.7
Os04g0445400 Oryza sativa ssp. japonica HOM05D004264 ORTHO05D004680 1.1e-06 57.8 190 21.1
HPP92_011366 Vanilla planifolia HOM05D004264 ORTHO05D004680 1.4e-06 57.4 99 36.4


User provided reference genes

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