Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s0791 Capsella rubella HOM05D006207 ORTHO05D007868 1.3e-171 606.3 314 100.0
AT3G08780 Arabidopsis thaliana HOM05D006207 ORTHO05D007868 1.5e-151 539.7 314 88.5
AL3G19780 Arabidopsis lyrata HOM05D006207 ORTHO05D007868 2.6e-151 538.9 314 88.9
Thhalv10021171m.g Eutrema salsugineum HOM05D006207 ORTHO05D007868 3.1e-144 515.4 314 84.7
CARHR083100 Cardamine hirsuta HOM05D006207 ORTHO05D007868 2.9e-142 508.8 314 83.8
Sp3g07200 Schrenkiella parvula HOM05D006207 ORTHO05D007868 1.7e-137 493.0 315 82.2
Aa31LG5G18780 Aethionema arabicum HOM05D006207 ORTHO05D007868 5.9e-127 458.0 297 78.8
C05p59060 Brassica napus HOM05D006207 ORTHO05D007868 5.9e-127 458.0 318 75.5
BolC5t34558H Brassica oleracea HOM05D006207 ORTHO05D007868 6.7e-123 444.5 317 74.1
A05p40020 Brassica napus HOM05D006207 ORTHO05D007868 1.6e-119 433.3 317 72.6
BraA05t22911Z Brassica rapa HOM05D006207 ORTHO05D007868 5.9e-119 431.4 318 72.0
THA.LOC104823306 Tarenaya hassleriana HOM05D006207 ORTHO05D007868 1.0e-118 430.6 315 70.5
BcaC05g29617 Brassica carinata HOM05D006207 ORTHO05D007868 1.3e-102 377.1 271 73.8
Cpa.g.sc5.234 Carica papaya HOM05D006207 ORTHO05D007868 2.3e-102 376.3 314 63.1
CANSAT35G0048 Cannabis sativa HOM05D006207 ORTHO05D007868 5.8e-90 335.1 312 57.7
Manes.09G111300 Manihot esculenta HOM05D006207 ORTHO05D007868 7.8e-87 324.7 316 56.3
CsaV3_4G026760 Cucumis sativus L. HOM05D006207 ORTHO05D007868 4.7e-84 315.5 326 55.2
MELO3C026025.2 Cucumis melo HOM05D006207 ORTHO05D007868 5.2e-83 312.0 324 55.2
Sed0003544 Sechium edule HOM05D006207 ORTHO05D007868 5.2e-83 312.0 320 55.3
ClCG04G006690 Citrullus lanatus HOM05D006207 ORTHO05D007868 1.5e-82 310.5 320 54.1
Actinidia29070 Actinidia chinensis HOM05D006207 ORTHO05D007868 3.5e-79 299.3 316 52.8
Duzib093G0843 Durio zibethinus HOM05D006207 ORTHO05D007868 7.8e-79 298.1 313 54.6
Ciclev10012309m.g Citrus clementina HOM05D006207 ORTHO05D007868 3.0e-78 296.2 312 52.9
Dinv35401 Davidia involucrata HOM05D006207 ORTHO05D007868 6.6e-78 295.0 321 51.7
Actinidia11552 Actinidia chinensis HOM05D006207 ORTHO05D007868 8.6e-78 294.7 315 52.1
GSVIVG01030275001 Vitis vinifera HOM05D006207 ORTHO05D002478 1.5e-77 293.9 313 53.0
Sed0019485 Sechium edule HOM05D006207 ORTHO05D007868 2.5e-77 293.1 325 51.4
CiPaw.09G215000 Carya illinoinensis HOM05D006207 ORTHO05D007868 4.3e-77 292.4 313 53.0
Thecc.05G007100 Theobroma cacao HOM05D006207 ORTHO05D007868 5.6e-77 292.0 313 53.0
Gohir.A01G229800 Gossypium hirsutum HOM05D006207 ORTHO05D007868 7.3e-77 291.6 313 53.0
CSS0029336 Camellia sinensis var. sinensis HOM05D006207 ORTHO05D007868 6.2e-76 288.5 323 51.4
Gohir.D01G219700 Gossypium hirsutum HOM05D006207 ORTHO05D007868 1.4e-75 287.3 313 52.4
RcHm_v2.0_Chr3g0461671 Rosa chinensis HOM05D006207 ORTHO05D007868 1.4e-75 287.3 314 51.0
Gohir.A09G167800 Gossypium hirsutum HOM05D006207 ORTHO05D007868 2.3e-75 286.6 313 52.7
Gorai.002G266400 Gossypium raimondii HOM05D006207 ORTHO05D007868 3.1e-75 286.2 313 52.4
COL.COLO4_14454 Corchorus olitorius HOM05D006207 ORTHO05D007868 4.0e-75 285.8 312 51.9
Prupe.6G284500 Prunus persica HOM05D006207 ORTHO05D007868 1.5e-74 283.9 317 51.1
TAR623G0507 Trochodendron aralioides HOM05D006207 ORTHO05D007868 1.5e-74 283.9 313 52.4
TAR633G0541 Trochodendron aralioides HOM05D006207 ORTHO05D007868 4.4e-74 282.3 313 50.8
Gorai.006G185200 Gossypium raimondii HOM05D006207 ORTHO05D007868 1.3e-73 280.8 313 51.1
Atru.chr8.2331 Acer truncatum HOM05D006207 ORTHO05D007868 6.4e-73 278.5 322 48.8
Duzib106G1231 Durio zibethinus HOM05D006207 ORTHO05D007868 6.4e-73 278.5 301 52.8
Dinv12164 Davidia involucrata HOM05D006207 ORTHO05D007868 7.1e-72 275.0 326 49.4
Aqoxy1G01290 Aquilegia oxysepala HOM05D006207 ORTHO05D007868 3.5e-71 272.7 336 49.7
Gohir.D09G163700 Gossypium hirsutum HOM05D006207 ORTHO05D007868 4.6e-71 272.3 313 50.8
TWI53G1221 Tripterygium wilfordii HOM05D006207 ORTHO05D007868 7.8e-71 271.6 313 49.5
Lsat_1_v5_gn_8_103441 Lactuca sativa HOM05D006207 ORTHO05D007868 1.0e-70 271.2 315 48.6
PGR031G0899 Punica granatum HOM05D006207 ORTHO05D007868 1.0e-70 271.2 317 49.5
Nn2g11009 Nelumbo nucifera HOM05D006207 ORTHO05D007868 1.3e-70 270.8 301 50.5
vmacro08907 Vaccinium macrocarpon HOM05D006207 ORTHO05D007868 1.9e-69 266.9 314 48.4
Lalb_Chr12g0207271 Lupinus albus HOM05D006207 ORTHO05D007868 2.5e-69 266.5 318 48.7
arahy.Tifrunner.gnm1.ann1.S95MPE Arachis hypogaea HOM05D006207 ORTHO05D007868 7.3e-69 265.0 336 47.9
TWI74G1498 Tripterygium wilfordii HOM05D006207 ORTHO05D007868 9.6e-69 264.6 311 47.3
FAN05G3975 Fragaria x ananassa HOM05D006207 ORTHO05D007868 1.6e-68 263.8 315 48.3
FAN05G5543 Fragaria x ananassa HOM05D006207 ORTHO05D007868 3.6e-68 262.7 315 48.3
Lj3g0024527 Lotus japonicus HOM05D006207 ORTHO05D007868 4.7e-68 262.3 316 49.1
Psat7g249160 Pisum sativum HOM05D006207 ORTHO05D007868 8.1e-68 261.5 330 48.5
Glyma.U032705 Glycine max HOM05D006207 ORTHO05D007868 9.9e-66 254.6 319 47.6
FvH4_6g10650 Fragaria vesca HOM05D006207 ORTHO05D007868 1.7e-65 253.8 315 47.0
FAN14G5611 Fragaria x ananassa HOM05D006207 ORTHO05D007868 1.7e-65 253.8 315 47.0
Glyma.01G125600 Glycine max HOM05D006207 ORTHO05D007868 1.7e-65 253.8 316 47.5
arahy.Tifrunner.gnm1.ann1.WBCD4G Arachis hypogaea HOM05D006207 ORTHO05D007868 6.4e-65 251.9 337 46.0
FAN09G2678 Fragaria x ananassa HOM05D006207 ORTHO05D007868 1.1e-64 251.1 315 47.3
Phvul.010G064400 Phaseolus vulgaris HOM05D006207 ORTHO05D007868 1.9e-64 250.4 324 49.1
Sabra16G0120700 Salix brachista HOM05D006207 ORTHO05D007868 2.4e-64 250.0 320 46.6
Potri.016G126200 Populus trichocarpa HOM05D006207 ORTHO05D007868 2.1e-63 246.9 320 45.9
SHI12871 Sapria himalayana HOM05D006207 ORTHO05D007868 3.5e-63 246.1 306 49.0
QL07p033964 Quercus lobata HOM05D006207 ORTHO05D007868 6.0e-63 245.4 320 44.4
HanXRQChr16g0510291 Helianthus annuus HOM05D006207 ORTHO05D007868 6.6e-62 241.9 313 47.0
Sc01g0005970 Simmondsia chinensis HOM05D006207 ORTHO05D007868 2.1e-60 236.9 317 46.4
PGSC0003DMG400017108 Solanum tuberosum HOM05D006207 ORTHO05D007868 2.4e-59 233.4 319 42.0
vmacro20324 Vaccinium macrocarpon HOM05D006207 ORTHO05D007868 6.9e-59 231.9 307 44.3
EL10Ac5g12487 Beta vulgaris HOM05D006207 ORTHO05D007868 2.6e-58 229.9 315 43.2
Sopen09g008460 Solanum pennellii HOM05D006207 ORTHO05D007868 3.4e-58 229.6 319 42.0
VMungo0331G1865 Vigna mungo HOM05D006207 ORTHO05D007868 3.4e-58 229.6 311 45.0
Rhsim04G0125000 Rhododendron simsii HOM05D006207 ORTHO05D007868 9.9e-58 228.0 313 45.0
Cc06_g00770 Coffea canephora HOM05D006207 ORTHO05D002478 4.9e-57 225.7 318 42.5
CDE07G0940 Ceratophyllum demersum HOM05D006207 ORTHO05D007868 1.9e-56 223.8 311 46.3
Cfa017117 Carpinus fangiana HOM05D006207 ORTHO05D007868 2.4e-56 223.4 298 45.3
Oeu057638.1 Olea europaea HOM05D006207 ORTHO05D007868 2.4e-56 223.4 310 41.0
CAN.G967.4 Capsicum annuum HOM05D006207 ORTHO05D007868 5.4e-56 222.2 318 40.9
Nitab4.5_0000230g0180 Nicotiana tabacum HOM05D006207 ORTHO05D007868 5.4e-56 222.2 302 42.7
Nitab4.5_0015157g0010 Nicotiana tabacum HOM05D006207 ORTHO05D007868 1.6e-55 220.7 301 42.5
DCAR_023998 Daucus carota HOM05D006207 ORTHO05D007868 6.0e-55 218.8 312 42.0
Oeu038722.1 Olea europaea HOM05D006207 ORTHO05D007868 1.3e-54 217.6 310 41.9
PSO765G0078 Papaver somniferum HOM05D006207 ORTHO05D007868 1.7e-54 217.2 319 41.7
TPR.G5270 Trifolium pratense HOM05D006207 ORTHO05D007868 1.7e-54 217.2 325 42.8
Peaxi162Scf00744g00339 Petunia axillaris HOM05D006207 ORTHO05D007868 7.4e-53 211.8 329 39.5
ECA236G5132 Erigeron canadensis HOM05D006207 ORTHO05D007868 1.1e-51 208.0 309 41.4
Migut.J00099 Erythranthe guttata HOM05D006207 ORTHO05D007868 1.8e-51 207.2 310 40.3
MSTRG.5544 Avicennia marina HOM05D006207 ORTHO05D007868 2.9e-49 199.9 314 38.5
HPP92_019707 Vanilla planifolia HOM05D006207 ORTHO05D007868 4.9e-49 199.1 320 40.3
MBI03_g07303_MAGBIO Magnolia biondii HOM05D006207 ORTHO05D007868 9.3e-48 194.9 308 41.9
Medtr4g014250 Medicago truncatula HOM05D006207 ORTHO05D007868 1.3e-46 191.0 308 40.6
unitig_27.g24873 Utricularia gibba HOM05D006207 ORTHO05D007868 3.9e-46 189.5 312 39.4
Ah.12g059050 Amaranthus hybridus HOM05D006207 ORTHO05D007868 1.1e-45 188.0 302 38.7
CDE06G0694 Ceratophyllum demersum HOM05D006207 ORTHO05D007868 3.3e-45 186.4 309 41.1
Lj2C67T4 Lonicera japonica HOM05D006207 ORTHO05D007868 5.3e-43 179.1 200 48.5
ATR0594G098 Amborella trichopoda HOM05D006207 ORTHO05D007868 1.4e-40 171.0 301 39.2
Pp3c3_16910 Physcomitrium patens HOM05D006207 ORTHO05D007868 1.8e-38 164.1 355 33.8
SEGI_14997 Sequoiadendron giganteum HOM05D006207 ORTHO05D007868 5.7e-37 159.1 392 30.4
Solyc09g015180.4 Solanum lycopersicum HOM05D006207 ORTHO05D007868 2.8e-36 156.8 244 39.3
Lj3P946T49 Lonicera japonica HOM05D006207 ORTHO05D007868 4.8e-36 156.0 186 45.7
Rhsim05G0225500 Rhododendron simsii HOM05D006207 ORTHO05D007868 7.6e-34 148.7 181 45.9
AUR62030762 Chenopodium quinoa HOM05D006207 ORTHO05D007868 1.4e-32 144.4 298 35.2
Os07g0540200 Oryza sativa ssp. japonica HOM05D006207 ORTHO05D007868 6.7e-30 135.6 307 34.5
Zm00001eb163300 Zea mays HOM05D006207 ORTHO05D007868 1.6e-28 131.0 305 33.8
Duzib128G0456 Durio zibethinus HOM05D006207 ORTHO05D007868 3.1e-27 126.7 180 44.4
AagrBONN_evm.TU.Sc2ySwM_368.1939 Anthoceros agrestis HOM05D006207 ORTHO05D007868 5.9e-26 122.5 390 25.9
MD04G1166200 Malus domestica HOM05D006207 ORTHO05D007868 2.2e-25 120.6 169 43.8
CBR_g48858 Chara braunii HOM05D006207 ORTHO05D007868 2.9e-25 120.2 196 38.3
Os04g0479300 Oryza sativa ssp. japonica HOM05D006207 ORTHO05D007868 1.4e-24 117.9 304 32.2
AUR62030533 Chenopodium quinoa HOM05D006207 ORTHO05D007868 2.5e-24 117.1 133 44.4
Zm00001eb421620 Zea mays HOM05D006207 ORTHO05D007868 2.6e-18 97.1 264 33.3
Ca_20352_v3 Cicer arietinum L. HOM05D006207 ORTHO05D007868 5.0e-17 92.8 91 53.8
SalBow6G1507 Salvia bowleyana HOM05D000800 ORTHO05D000658 2.6e-13 80.5 96 41.7
Mapoly0060s0108 Marchantia polymorpha HOM05D006207 ORTHO05D007868 9.7e-13 78.6 125 37.6
MD04G1166100 Malus domestica HOM05D006207 ORTHO05D007868 4.8e-12 76.3 65 58.5
VMungo1215G0839 Vigna mungo HOM05D006207 ORTHO05D007868 8.5e-09 65.5 77 42.9
BraA04t16351Z Brassica rapa HOM05D006207 ORTHO05D007868 2.5e-08 63.9 45 71.1


User provided reference genes

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