Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s0765 Capsella rubella HOM05D003920 ORTHO05D004877 2.6e-186 655.2 327 100.0
AT3G08505 Arabidopsis thaliana HOM05D003920 ORTHO05D004877 6.3e-164 580.9 330 89.4
AL3G19480 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 4.2e-160 568.2 330 88.2
Sp3g06990 Schrenkiella parvula HOM05D003920 ORTHO05D004877 7.7e-146 520.8 341 81.2
Thhalv10021103m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 1.0e-145 520.4 338 80.5
CARHR082810 Cardamine hirsuta HOM05D003920 ORTHO05D004877 1.7e-140 503.1 330 78.5
BcaB04g21254 Brassica carinata HOM05D003920 ORTHO05D004877 4.8e-132 474.9 330 75.8
BraA03t12740Z Brassica rapa HOM05D003920 ORTHO05D004877 1.4e-131 473.4 323 75.2
BcaB03g11569 Brassica carinata HOM05D003920 ORTHO05D004877 2.4e-131 472.6 329 74.5
BcaC09g47976 Brassica carinata HOM05D003920 ORTHO05D004877 9.1e-131 470.7 328 75.0
A03p35650 Brassica napus HOM05D003920 ORTHO05D004877 2.0e-130 469.5 318 75.5
BraA01t04343Z Brassica rapa HOM05D003920 ORTHO05D004877 4.5e-130 468.4 327 75.2
BolC3t16599H Brassica oleracea HOM05D003920 ORTHO05D004877 1.9e-128 463.0 326 75.2
BcaC01g04265 Brassica carinata HOM05D003920 ORTHO05D004877 3.3e-128 462.2 319 75.5
C03p43290 Brassica napus HOM05D003920 ORTHO05D004877 7.2e-128 461.1 317 75.7
THA.LOC104827426 Tarenaya hassleriana HOM05D003920 ORTHO05D004877 1.8e-126 456.4 347 70.0
THA.LOC104819067 Tarenaya hassleriana HOM05D003920 ORTHO05D004877 2.8e-124 449.1 357 68.3
BraA08t33064Z Brassica rapa HOM05D003920 ORTHO05D004877 3.6e-119 432.2 334 68.3
BcaC07g37767 Brassica carinata HOM05D003920 ORTHO05D004877 6.1e-119 431.4 332 68.4
Aa31LG5G18640 Aethionema arabicum HOM05D003920 ORTHO05D004877 4.4e-117 425.2 239 82.4
Gohir.A08G027700 Gossypium hirsutum HOM05D003920 ORTHO05D004877 2.9e-116 422.5 358 64.8
Gohir.D08G038400 Gossypium hirsutum HOM05D003920 ORTHO05D004877 2.9e-116 422.5 358 64.8
Lj3g0003225 Lotus japonicus HOM05D003920 ORTHO05D004877 4.9e-116 421.8 357 62.7
Gorai.004G036900 Gossypium raimondii HOM05D003920 ORTHO05D004877 1.1e-115 420.6 357 64.7
Dinv43454 Davidia involucrata HOM05D003920 ORTHO05D004877 3.2e-115 419.1 360 62.8
CARHR291420 Cardamine hirsuta HOM05D003920 ORTHO05D004877 7.0e-115 417.9 344 64.8
Ca_27172_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 7.0e-115 417.9 355 63.1
Psat5g204200 Pisum sativum HOM05D003920 ORTHO05D004877 7.0e-115 417.9 355 61.7
Sp1g00020 Schrenkiella parvula HOM05D003920 ORTHO05D004877 1.6e-114 416.8 356 63.5
A08p28590 Brassica napus HOM05D003920 ORTHO05D004877 2.7e-114 416.0 318 67.0
Manes.10G144700 Manihot esculenta HOM05D003920 ORTHO05D004877 2.7e-114 416.0 359 63.0
Potri.001G268200 Populus trichocarpa HOM05D003920 ORTHO05D004877 2.7e-114 416.0 363 63.1
ECA248G0446 Erigeron canadensis HOM05D003920 ORTHO05D004877 4.6e-114 415.2 345 63.5
Potri.009G062600 Populus trichocarpa HOM05D003920 ORTHO05D004877 4.6e-114 415.2 363 62.3
TPR.G12140 Trifolium pratense HOM05D003920 ORTHO05D004877 6.0e-114 414.8 339 63.1
Medtr3g028190 Medicago truncatula HOM05D003920 ORTHO05D004877 7.8e-114 414.5 355 62.3
Sabra09G0046300 Salix brachista HOM05D003920 ORTHO05D004877 1.3e-113 413.7 356 61.8
Sabra16G0164300 Salix brachista HOM05D003920 ORTHO05D004877 3.0e-113 412.5 358 62.0
Phvul.005G019900 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 3.9e-113 412.1 364 60.4
Glyma.15G272400 Glycine max HOM05D003920 ORTHO05D004877 5.0e-113 411.8 361 60.7
TWI73G0359 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 8.6e-113 411.0 379 59.4
Nn2g15431 Nelumbo nucifera HOM05D003920 ORTHO05D004877 1.1e-112 410.6 352 62.5
Prupe.2G011700 Prunus persica HOM05D003920 ORTHO05D004877 1.9e-112 409.8 365 59.5
arahy.Tifrunner.gnm1.ann1.Z50281 Arachis hypogaea HOM05D003920 ORTHO05D004877 2.5e-112 409.5 359 62.1
Thhalv10010518m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 3.3e-112 409.1 342 64.3
Glyma.08G153800 Glycine max HOM05D003920 ORTHO05D004877 3.3e-112 409.1 361 60.9
DCAR_003208 Daucus carota HOM05D003920 ORTHO05D004877 4.3e-112 408.7 357 61.1
Peaxi162Scf00428g00618 Petunia axillaris HOM05D003920 ORTHO05D004877 1.6e-111 406.8 359 59.6
Rhsim07G0054700 Rhododendron simsii HOM05D003920 ORTHO05D004877 1.6e-111 406.8 356 61.8
MD02G1313900 Malus domestica HOM05D003920 ORTHO05D004877 2.8e-111 406.0 360 59.7
Aqoxy2G00138 Aquilegia oxysepala HOM05D003920 ORTHO05D004877 4.7e-111 405.2 357 60.2
HanXRQChr01g0016141 Helianthus annuus HOM05D003920 ORTHO05D004877 4.7e-111 405.2 347 60.5
Eucgr.J01264 Eucalyptus grandis HOM05D003920 ORTHO05D004877 1.1e-110 404.1 360 60.6
FAN06G2354 Fragaria x ananassa HOM05D003920 ORTHO05D004877 1.1e-110 404.1 359 59.6
Nn7g36164 Nelumbo nucifera HOM05D003920 ORTHO05D004877 1.1e-110 404.1 353 61.8
FvH4_7g00890 Fragaria vesca HOM05D003920 ORTHO05D004877 1.8e-110 403.3 359 59.3
arahy.Tifrunner.gnm1.ann1.LBVL0K Arachis hypogaea HOM05D003920 ORTHO05D004877 2.3e-110 402.9 340 63.5
MSTRG.5016 Avicennia marina HOM05D003920 ORTHO05D004877 6.8e-110 401.4 313 66.5
MD07G1008500 Malus domestica HOM05D003920 ORTHO05D004877 6.8e-110 401.4 360 59.7
VMungo1080G0709 Vigna mungo HOM05D003920 ORTHO05D004877 8.9e-110 401.0 361 59.3
Lalb_Chr01g0015291 Lupinus albus HOM05D003920 ORTHO05D004877 1.2e-109 400.6 355 60.6
Peaxi162Scf00407g00639 Petunia axillaris HOM05D003920 ORTHO05D004877 1.5e-109 400.2 358 57.8
PSO384G3532 Papaver somniferum HOM05D003920 ORTHO05D004877 2.0e-109 399.8 366 58.5
A08p10660 Brassica napus HOM05D003920 ORTHO05D004877 5.8e-109 398.3 300 70.0
PSO339G5616 Papaver somniferum HOM05D003920 ORTHO05D004877 5.8e-109 398.3 366 58.2
CDE04G0006 Ceratophyllum demersum HOM05D003920 ORTHO05D004877 9.8e-109 397.5 347 57.1
BolC8t48154H Brassica oleracea HOM05D003920 ORTHO05D004877 1.7e-108 396.7 298 69.8
Migut.N01471 Erythranthe guttata HOM05D003920 ORTHO05D004877 3.7e-108 395.6 345 60.3
Gorai.004G173300 Gossypium raimondii HOM05D003920 ORTHO05D004877 6.4e-108 394.8 353 59.8
Nitab4.5_0000634g0100 Nicotiana tabacum HOM05D003920 ORTHO05D004877 1.1e-107 394.0 342 58.5
COL.COLO4_23923 Corchorus olitorius HOM05D003920 ORTHO05D004877 2.4e-107 392.9 347 56.2
HPP92_005768 Vanilla planifolia HOM05D003920 ORTHO05D004877 3.2e-107 392.5 370 57.8
CAN.G709.1 Capsicum annuum HOM05D003920 ORTHO05D004877 4.1e-107 392.1 349 59.6
Sed0011667 Sechium edule HOM05D003920 ORTHO05D004877 4.1e-107 392.1 360 58.3
Solyc10g038000.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 4.1e-107 392.1 359 58.2
Thecc.01G412100 Theobroma cacao HOM05D003920 ORTHO05D004877 4.1e-107 392.1 324 65.1
DCAR_022405 Daucus carota HOM05D003920 ORTHO05D004877 5.4e-107 391.7 356 59.8
Zm00001eb381600 Zea mays HOM05D003920 ORTHO05D004877 3.5e-106 389.0 370 57.0
BolC8t49780H Brassica oleracea HOM05D003920 ORTHO05D004877 4.6e-106 388.7 298 67.4
Sopen10g011530 Solanum pennellii HOM05D003920 ORTHO05D004877 4.6e-106 388.7 359 57.9
AL5G46410 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 1.7e-105 386.7 318 64.5
QL04p007133 Quercus lobata HOM05D003920 ORTHO05D004877 1.7e-105 386.7 330 61.5
Ciclev10031666m.g Citrus clementina HOM05D003920 ORTHO05D004877 5.1e-105 385.2 317 57.4
MBI04_g13623_MAGBIO Magnolia biondii HOM05D003920 ORTHO05D004877 5.1e-105 385.2 342 59.6
SGA_v2.0_scaffold167G38446 Striga asiatica HOM05D003920 ORTHO05D004877 5.1e-105 385.2 335 62.4
SEGI_34678 Sequoiadendron giganteum HOM05D003920 ORTHO05D004877 1.1e-104 384.0 340 59.7
Sc10g0000010 Simmondsia chinensis HOM05D003920 ORTHO05D004877 1.1e-104 384.0 333 61.6
Lj9C630T11 Lonicera japonica HOM05D003920 ORTHO05D004877 1.5e-104 383.6 325 56.6
PGR044G2195 Punica granatum HOM05D003920 ORTHO05D004877 1.9e-104 383.3 365 58.1
TAR369G0176 Trochodendron aralioides HOM05D003920 ORTHO05D004877 1.9e-104 383.3 363 57.9
Sopen01g034110 Solanum pennellii HOM05D003920 ORTHO05D004877 2.5e-104 382.9 357 57.1
Aa31LG10G17420 Aethionema arabicum HOM05D003920 ORTHO05D004877 3.3e-104 382.5 315 64.1
EL10Ac2g04315 Beta vulgaris HOM05D003920 ORTHO05D004877 3.3e-104 382.5 333 61.6
Carub.0005s3016 Capsella rubella HOM05D003920 ORTHO05D004877 5.6e-104 381.7 315 65.1
Solyc01g087030.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 7.3e-104 381.3 361 56.5
ATR0605G260 Amborella trichopoda HOM05D003920 ORTHO05D004877 9.5e-104 380.9 330 59.4
Nitab4.5_0011837g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 1.6e-103 380.2 370 55.9
vmacro13655 Vaccinium macrocarpon HOM05D003920 ORTHO05D004877 3.6e-103 379.0 400 53.2
SalBow5G4770 Salvia bowleyana HOM05D003920 ORTHO05D004877 1.1e-102 377.5 339 59.6
unitig_85.g27216 Utricularia gibba HOM05D003920 ORTHO05D004877 1.4e-102 377.1 341 53.4
Atru.chr11.2647 Acer truncatum HOM05D003920 ORTHO05D004877 1.8e-102 376.7 316 61.4
CSS0030964 Camellia sinensis var. sinensis HOM05D003920 ORTHO05D004877 5.2e-102 375.2 326 61.3
AUR62009376 Chenopodium quinoa HOM05D003920 ORTHO05D004877 1.3e-100 370.5 335 57.9
Haze_03212 Corylus avellana HOM05D003920 ORTHO05D004877 4.9e-100 368.6 326 60.1
TAR633G1074 Trochodendron aralioides HOM05D003920 ORTHO05D004877 4.9e-100 368.6 321 53.9
Lsat_1_v5_gn_1_107981 Lactuca sativa HOM05D003920 ORTHO05D004877 1.2e-98 364.0 318 60.7
CsaV3_7G031170 Cucumis sativus L. HOM05D003920 ORTHO05D004877 2.1e-98 363.2 317 60.9
RcHm_v2.0_Chr1g0315781 Rosa chinensis HOM05D003920 ORTHO05D004877 2.1e-98 363.2 325 58.8
MELO3C023541.2 Cucumis melo HOM05D003920 ORTHO05D004877 2.7e-98 362.8 322 60.2
FAN01G3017 Fragaria x ananassa HOM05D003920 ORTHO05D004877 2.7e-98 362.8 325 58.8
FAN03G2194 Fragaria x ananassa HOM05D003920 ORTHO05D004877 2.7e-98 362.8 325 58.8
Thhalv10023829m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 3.0e-97 359.4 346 59.5
Cc02_g27790 Coffea canephora HOM05D003920 ORTHO05D004877 5.1e-97 358.6 336 56.8
Gohir.D08G166100 Gossypium hirsutum HOM05D003920 ORTHO05D004877 5.6e-96 355.1 218 72.5
MSTRG.20593 Avicennia marina HOM05D003920 ORTHO05D004877 1.5e-93 347.1 333 56.8
C08p21410 Brassica napus HOM05D003920 ORTHO05D004877 7.1e-91 338.2 198 73.7
ClCG09G004250 Citrullus lanatus HOM05D003920 ORTHO05D004877 8.7e-89 331.3 253 61.3
SMO203G0245 Selaginella moellendorffii HOM05D003920 ORTHO05D004877 2.1e-87 326.6 313 55.9
TWI53G1741 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 4.8e-87 325.5 190 74.7
BcaC07g39147 Brassica carinata HOM05D003920 ORTHO05D004877 1.1e-86 324.3 305 53.4
PGR044G2672 Punica granatum HOM05D003920 ORTHO05D004877 2.4e-86 323.2 364 50.0
Sp5g00030 Schrenkiella parvula HOM05D003920 ORTHO05D004877 3.1e-86 322.8 328 56.1
Pp3c5_25680 Physcomitrium patens HOM05D003920 ORTHO05D004877 9.0e-86 321.2 340 45.9
Manes.07G005000 Manihot esculenta HOM05D003920 ORTHO05D004877 2.2e-84 316.6 296 60.5
Zm00001eb252860 Zea mays HOM05D003920 ORTHO05D004877 4.2e-83 312.4 327 47.4
Lj7A569G59 Lonicera japonica HOM05D003920 ORTHO05D004877 1.6e-82 310.5 188 70.2
Hund03665 Selenicereus undatus HOM05D003920 ORTHO05D004877 2.3e-81 306.6 317 55.5
Mapoly0042s0020 Marchantia polymorpha HOM05D003920 ORTHO05D004877 5.1e-81 305.4 413 42.1
SGA_v2.0_scaffold24G10678 Striga asiatica HOM05D003920 ORTHO05D004877 2.5e-80 303.1 327 52.3
Actinidia24671 Actinidia chinensis HOM05D003920 ORTHO05D004877 9.6e-80 301.2 255 57.3
Potri.004G134400 Populus trichocarpa HOM05D003920 ORTHO05D004877 9.6e-80 301.2 297 55.6
Gohir.A08G145200 Gossypium hirsutum HOM05D003920 ORTHO05D004877 2.1e-79 300.1 291 57.0
Peaxi162Scf00148g00610 Petunia axillaris HOM05D003920 ORTHO05D004877 9.0e-78 294.7 298 49.7
Lalb_Chr20g0108061 Lupinus albus HOM05D003920 ORTHO05D004877 1.2e-77 294.3 314 53.5
Nitab4.5_0004786g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 2.0e-77 293.5 336 51.8
AUR62023057 Chenopodium quinoa HOM05D003920 ORTHO05D004877 3.4e-77 292.7 290 56.6
Glyma.15G273000 Glycine max HOM05D003920 ORTHO05D004877 1.4e-75 287.3 310 52.9
Lalb_Chr01g0015331 Lupinus albus HOM05D003920 ORTHO05D004877 1.4e-75 287.3 311 53.1
TPR.G12281 Trifolium pratense HOM05D003920 ORTHO05D004877 3.2e-75 286.2 301 53.2
Sabra04G0083700 Salix brachista HOM05D003920 ORTHO05D004877 7.1e-75 285.0 184 67.9
Phvul.005G020000 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 9.3e-75 284.6 337 49.9
VMungo1080G1751 Vigna mungo HOM05D003920 ORTHO05D004877 1.6e-74 283.9 316 53.2
arahy.Tifrunner.gnm1.ann1.3CZ6TN Arachis hypogaea HOM05D003920 ORTHO05D004877 3.5e-74 282.7 317 52.1
Lj3g0002246 Lotus japonicus HOM05D003920 ORTHO05D004877 6.0e-74 282.0 320 49.4
vmacro08182 Vaccinium macrocarpon HOM05D003920 ORTHO05D004877 3.0e-73 279.6 299 54.5
arahy.Tifrunner.gnm1.ann1.NHZH5I Arachis hypogaea HOM05D003920 ORTHO05D004877 6.7e-73 278.5 312 52.2
Medtr3g028170 Medicago truncatula HOM05D003920 ORTHO05D004877 8.7e-73 278.1 306 52.6
Glyma.08G154100 Glycine max HOM05D003920 ORTHO05D004877 2.5e-72 276.6 313 51.8
AagrBONN_evm.TU.Sc2ySwM_344.3645 Anthoceros agrestis HOM05D003920 ORTHO05D004877 3.3e-72 276.2 316 49.1
Ca_14370_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 3.1e-70 269.6 314 50.6
Psat5g204240 Pisum sativum HOM05D003920 ORTHO05D004877 4.5e-69 265.8 321 48.9
Nitab4.5_0001299g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 7.6e-69 265.0 322 44.7
Actinidia31057 Actinidia chinensis HOM05D003920 ORTHO05D004877 7.4e-64 248.4 330 50.6
Actinidia36714 Actinidia chinensis HOM05D003920 ORTHO05D004877 1.3e-63 247.7 330 42.4
Nitab4.5_0000254g0170 Nicotiana tabacum HOM05D003920 ORTHO05D004877 6.9e-62 241.9 265 47.2
Cre06.g278136 Chlamydomonas reinhardtii HOM05D003920 ORTHO05D004877 3.7e-55 219.5 220 45.0
arahy.Tifrunner.gnm1.ann1.HIY6S0 Arachis hypogaea HOM05D003920 ORTHO05D004877 6.3e-55 218.8 350 40.6
arahy.Tifrunner.gnm1.ann1.YQ2HRW Arachis hypogaea HOM05D003920 ORTHO05D004877 2.0e-53 213.8 356 39.9
PRCOL_00005356 Prasinoderma coloniale HOM05D003920 ORTHO05D004877 1.9e-51 207.2 317 41.0
unitig_26.g8826 Utricularia gibba HOM05D003920 ORTHO05D004877 4.3e-48 196.1 285 41.4
Nitab4.5_0003190g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 2.8e-47 193.4 242 42.6
GSVIVG01032073001 Vitis vinifera HOM05D003920 ORTHO05D004877 1.4e-43 181.0 108 75.0
Oeu039134.1 Olea europaea HOM05D003920 ORTHO05D004877 3.9e-41 172.9 108 71.3
Phvul.011G110100 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 2.0e-40 170.6 93 79.6
TPR.G31394 Trifolium pratense HOM05D002628 ORTHO05D002785 7.5e-16 89.0 126 35.7
QL04p032014 Quercus lobata HOM05D003920 ORTHO05D004877 6.6e-12 75.9 38 78.9
QL04p032319 Quercus lobata HOM05D003920 ORTHO05D004877 8.6e-12 75.5 48 64.6
QL04p005704 Quercus lobata HOM05D003920 ORTHO05D004877 9.8e-08 62.0 57 61.4


User provided reference genes

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