Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s0737 Capsella rubella HOM05D005917 ORTHO05D007517 2.2e-280 968.4 510 100.0
AT3G07790 Arabidopsis thaliana HOM05D005917 ORTHO05D007517 2.0e-270 935.3 510 95.1
AL3G19160 Arabidopsis lyrata HOM05D005917 ORTHO05D007517 3.3e-268 927.9 510 92.9
CARHR082500 Cardamine hirsuta HOM05D005917 ORTHO05D007517 2.3e-258 895.2 511 89.6
Thhalv10022183m.g Eutrema salsugineum HOM05D005917 ORTHO05D007517 7.5e-257 890.2 511 89.8
Sp3g06720 Schrenkiella parvula HOM05D005917 ORTHO05D007517 1.4e-255 885.9 510 88.8
Aa31LG5G18370 Aethionema arabicum HOM05D005917 ORTHO05D007517 9.6e-244 846.7 509 84.9
BraA01t04362Z Brassica rapa HOM05D005917 ORTHO05D007517 9.0e-226 786.9 517 83.2
BolC1t05532H Brassica oleracea HOM05D005917 ORTHO05D007517 9.9e-225 783.5 517 81.4
BcaC09g47947 Brassica carinata HOM05D005917 ORTHO05D007517 2.2e-224 782.3 518 81.5
BolC5t34607H Brassica oleracea HOM05D005917 ORTHO05D007517 2.1e-219 765.8 514 80.4
THA.LOC104802624 Tarenaya hassleriana HOM05D005917 ORTHO05D007517 8.2e-219 763.8 509 78.0
C05p59510 Brassica napus HOM05D005917 ORTHO05D007517 2.4e-218 762.3 514 80.2
BcaC05g29571 Brassica carinata HOM05D005917 ORTHO05D007517 3.4e-217 758.4 516 79.3
BraA05t22776Z Brassica rapa HOM05D005917 ORTHO05D007517 5.8e-217 757.7 513 79.7
A05p40430 Brassica napus HOM05D005917 ORTHO05D007517 1.3e-216 756.5 513 79.5
Duzib133G0758 Durio zibethinus HOM05D005917 ORTHO05D007517 5.7e-212 741.1 512 74.6
COL.COLO4_33026 Corchorus olitorius HOM05D005917 ORTHO05D007517 9.6e-212 740.3 512 75.8
Gorai.007G167200 Gossypium raimondii HOM05D005917 ORTHO05D007517 1.3e-208 729.9 512 74.2
Gohir.D11G156700 Gossypium hirsutum HOM05D005917 ORTHO05D007517 1.9e-207 726.1 514 74.3
Gohir.A11G150200 Gossypium hirsutum HOM05D005917 ORTHO05D007517 4.2e-207 724.9 512 73.6
Thecc.01G189700 Theobroma cacao HOM05D005917 ORTHO05D007517 3.6e-206 721.8 512 73.0
Cpa.g.sc136.15 Carica papaya HOM05D005917 ORTHO05D007517 1.8e-202 709.5 512 72.5
QL08p028769 Quercus lobata HOM05D005917 ORTHO05D007517 9.7e-196 687.2 518 69.9
CsaV3_7G002690 Cucumis sativus L. HOM05D005917 ORTHO05D007517 1.7e-195 686.4 510 69.8
ClCG02G002680 Citrullus lanatus HOM05D005917 ORTHO05D007517 6.3e-195 684.5 510 69.8
TWI36G1171 Tripterygium wilfordii HOM05D005917 ORTHO05D007517 1.4e-194 683.3 513 69.4
PGR042G1386 Punica granatum HOM05D005917 ORTHO05D007517 5.9e-193 677.9 512 70.9
Manes.13G063400 Manihot esculenta HOM05D005917 ORTHO05D007517 7.7e-193 677.6 513 69.2
Potri.002G222100 Populus trichocarpa HOM05D005917 ORTHO05D007517 1.7e-192 676.4 513 68.4
Cfa014247 Carpinus fangiana HOM05D005917 ORTHO05D007517 1.6e-190 669.8 516 70.2
Haze_12696 Corylus avellana HOM05D005917 ORTHO05D007517 1.6e-190 669.8 522 69.7
Sabra02G0169500 Salix brachista HOM05D005917 ORTHO05D007517 1.6e-190 669.8 513 68.2
Eucgr.K00656 Eucalyptus grandis HOM05D005917 ORTHO05D007517 4.7e-190 668.3 513 69.2
TWI18G0259 Tripterygium wilfordii HOM05D005917 ORTHO05D007517 4.7e-190 668.3 509 68.8
CiPaw.04G195700 Carya illinoinensis HOM05D005917 ORTHO05D007517 7.9e-190 667.5 514 69.5
Prupe.3G202200 Prunus persica HOM05D005917 ORTHO05D007517 1.1e-188 663.7 509 69.2
Sed0016848 Sechium edule HOM05D005917 ORTHO05D007517 9.7e-188 660.6 514 67.7
Atru.chr6.3353 Acer truncatum HOM05D005917 ORTHO05D007517 2.2e-184 649.4 515 68.0
MD09G1121500 Malus domestica HOM05D005917 ORTHO05D007517 5.0e-184 648.3 509 68.0
LjContig00081g0012334 Lotus japonicus HOM05D005917 ORTHO05D007517 4.7e-182 641.7 516 66.3
Ciclev10014942m.g Citrus clementina HOM05D005917 ORTHO05D007517 1.0e-181 640.6 516 66.7
arahy.Tifrunner.gnm1.ann1.V8M1HU Arachis hypogaea HOM05D005917 ORTHO05D007517 3.0e-181 639.0 522 65.7
arahy.Tifrunner.gnm1.ann1.410RPC Arachis hypogaea HOM05D005917 ORTHO05D007517 8.8e-181 637.5 522 65.9
MD17G1112500 Malus domestica HOM05D005917 ORTHO05D007517 1.5e-180 636.7 511 66.7
Manes.12G062101 Manihot esculenta HOM05D005917 ORTHO05D007517 2.6e-180 636.0 508 65.7
Potri.014G164200 Populus trichocarpa HOM05D005917 ORTHO05D007517 3.3e-180 635.6 518 65.4
FAN05G4769 Fragaria x ananassa HOM05D005917 ORTHO05D007517 4.4e-180 635.2 511 67.5
FAN09G3123 Fragaria x ananassa HOM05D005917 ORTHO05D007517 8.2e-179 630.9 512 66.2
FvH4_6g41230 Fragaria vesca HOM05D005917 ORTHO05D007517 1.4e-178 630.2 512 66.2
Lalb_Chr17g0349121 Lupinus albus HOM05D005917 ORTHO05D007517 2.4e-178 629.4 516 66.3
FAN14G0404 Fragaria x ananassa HOM05D005917 ORTHO05D007517 4.1e-178 628.6 512 66.2
Psat0s736g0080 Pisum sativum HOM05D005917 ORTHO05D007517 4.1e-178 628.6 511 65.6
Nn1g08522 Nelumbo nucifera HOM05D005917 ORTHO05D007517 1.6e-177 626.7 519 64.2
Lsat_1_v5_gn_7_96161 Lactuca sativa HOM05D005917 ORTHO05D007517 5.9e-177 624.8 518 65.8
Medtr5g097510 Medicago truncatula HOM05D005917 ORTHO05D007517 1.3e-176 623.6 515 65.2
VMungo0647G1382 Vigna mungo HOM05D005917 ORTHO05D007517 5.0e-176 621.7 505 64.8
Ca_06463_v3 Cicer arietinum L. HOM05D005917 ORTHO05D007517 1.1e-175 620.5 512 64.6
Glyma.14G006700 Glycine max HOM05D005917 ORTHO05D007517 1.9e-175 619.8 515 64.9
TPR.G15058 Trifolium pratense HOM05D005917 ORTHO05D007517 1.9e-175 619.8 511 64.6
Lj1P791T65 Lonicera japonica HOM05D005917 ORTHO05D007517 3.2e-175 619.0 514 65.2
Hma1.2p1_0405F.1_g145810 Hydrangea macrophylla HOM05D005917 ORTHO05D007517 9.4e-175 617.5 511 65.2
Ah.14g082780 Amaranthus hybridus HOM05D005917 ORTHO05D007517 6.1e-174 614.8 518 64.5
Sc21g0000840 Simmondsia chinensis HOM05D005917 ORTHO05D007517 2.0e-172 609.8 514 65.0
EL10Ac9g22738 Beta vulgaris HOM05D005917 ORTHO05D007517 4.4e-172 608.6 512 65.8
Glyma.02G306400 Glycine max HOM05D005917 ORTHO05D007517 4.4e-172 608.6 515 64.7
Sopen07g024410 Solanum pennellii HOM05D005917 ORTHO05D007517 5.7e-172 608.2 513 64.3
PGSC0003DMG400006133 Solanum tuberosum HOM05D005917 ORTHO05D007517 1.3e-171 607.1 514 64.4
Phvul.008G286200 Phaseolus vulgaris HOM05D005917 ORTHO05D007517 2.2e-171 606.3 512 63.5
RcHm_v2.0_Chr2g0156781 Rosa chinensis HOM05D005917 ORTHO05D007517 2.2e-171 606.3 511 64.4
Nitab4.5_0000441g0160 Nicotiana tabacum HOM05D005917 ORTHO05D007517 2.8e-171 605.9 517 66.2
Peaxi162Scf00776g00033 Petunia axillaris HOM05D005917 ORTHO05D007517 4.8e-171 605.1 515 65.4
Nitab4.5_0005699g0010 Nicotiana tabacum HOM05D005917 ORTHO05D007517 8.3e-171 604.4 518 64.5
Cc02_g11180 Coffea canephora HOM05D005917 ORTHO05D007517 1.4e-170 603.6 534 64.2
Solyc07g047980.3 Solanum lycopersicum HOM05D005917 ORTHO05D007517 1.8e-170 603.2 514 64.4
CAN.G854.3 Capsicum annuum HOM05D005917 ORTHO05D007517 2.4e-170 602.8 520 64.8
DCAR_019712 Daucus carota HOM05D005917 ORTHO05D007517 3.1e-170 602.4 512 63.9
SHI10119 Sapria himalayana HOM05D005917 ORTHO05D007517 3.1e-170 602.4 513 63.2
AUR62017525 Chenopodium quinoa HOM05D005917 ORTHO05D007517 1.6e-169 600.1 514 64.2
Rhsim06G0173900 Rhododendron simsii HOM05D005917 ORTHO05D007517 1.3e-168 597.0 515 63.5
TAR624G1058 Trochodendron aralioides HOM05D005917 ORTHO05D007517 2.9e-168 595.9 525 61.7
HanXRQChr04g0126661 Helianthus annuus HOM05D005917 ORTHO05D007517 6.5e-168 594.7 515 64.5
vmacro12107 Vaccinium macrocarpon HOM05D005917 ORTHO05D007517 6.5e-168 594.7 513 63.2
MBI16_g11554_MAGBIO Magnolia biondii HOM05D005917 ORTHO05D007517 4.2e-167 592.0 520 60.6
Aqoxy1G02033 Aquilegia oxysepala HOM05D005917 ORTHO05D007517 6.8e-165 584.7 516 61.6
AUR62015069 Chenopodium quinoa HOM05D005917 ORTHO05D007517 1.5e-164 583.6 467 67.0
Dinv07857 Davidia involucrata HOM05D005917 ORTHO05D007517 2.0e-164 583.2 512 63.7
ECA236G4414 Erigeron canadensis HOM05D005917 ORTHO05D007517 5.7e-164 581.6 524 61.6
FAN02G4512 Fragaria x ananassa HOM05D005917 ORTHO05D007517 3.1e-162 575.9 511 62.8
SGA_v2.0_scaffold302G47853 Striga asiatica HOM05D005917 ORTHO05D000086 3.1e-162 575.9 527 60.5
MSTRG.14928 Avicennia marina HOM05D005917 ORTHO05D007517 4.1e-162 575.5 524 60.9
PSO700G0235 Papaver somniferum HOM05D005917 ORTHO05D007517 1.1e-159 567.4 503 60.6
SalBow2G0814 Salvia bowleyana HOM05D005917 ORTHO05D007517 4.3e-159 565.5 522 60.7
TAR626G1403 Trochodendron aralioides HOM05D005917 ORTHO05D007517 6.1e-158 561.6 476 63.9
SalBow2G2149 Salvia bowleyana HOM05D005917 ORTHO05D007517 8.0e-158 561.2 517 60.3
PSO761G0708 Papaver somniferum HOM05D005917 ORTHO05D007517 6.8e-157 558.1 516 59.7
Oeu012341.1 Olea europaea HOM05D005917 ORTHO05D007517 6.4e-155 551.6 492 61.6
CDE02G0007 Ceratophyllum demersum HOM05D005917 ORTHO05D007517 1.9e-151 540.0 512 58.2
Migut.M00025 Erythranthe guttata HOM05D005917 ORTHO05D007517 8.0e-150 534.6 524 58.2
unitig_747.g21169 Utricularia gibba HOM05D005917 ORTHO05D007517 2.0e-145 520.0 524 55.9
HPP92_002896 Vanilla planifolia HOM05D005917 ORTHO05D007517 7.8e-145 518.1 536 55.6
HPP92_002885 Vanilla planifolia HOM05D005917 ORTHO05D007517 1.1e-143 514.2 532 55.1
CSS0026358 Camellia sinensis var. sinensis HOM05D005917 ORTHO05D007517 1.2e-140 504.2 516 57.0
Os06g0502900 Oryza sativa ssp. japonica HOM05D005917 ORTHO05D007517 1.9e-138 496.9 490 57.8
Actinidia09775 Actinidia chinensis HOM05D005917 ORTHO05D007517 4.1e-138 495.7 457 60.4
Zm00001eb403830 Zea mays HOM05D005917 ORTHO05D007517 5.2e-133 478.8 522 55.0
Zm00001eb209430 Zea mays HOM05D005917 ORTHO05D007517 2.6e-132 476.5 491 56.2
Zm00001eb209420 Zea mays HOM05D005917 ORTHO05D007517 3.4e-132 476.1 491 55.8
GSVIVG01030044001 Vitis vinifera HOM05D005917 ORTHO05D000188 1.0e-128 464.5 478 56.7
Manes.12G052600 Manihot esculenta HOM05D005917 ORTHO05D007517 2.0e-124 450.3 512 51.6
SEGI_07273 Sequoiadendron giganteum HOM05D005917 ORTHO05D007517 5.8e-124 448.7 532 49.8
ATR0665G318 Amborella trichopoda HOM05D005917 ORTHO05D007517 1.4e-117 427.6 511 50.7
Mapoly0016s0028 Marchantia polymorpha HOM05D005917 ORTHO05D007517 8.4e-115 418.3 503 49.9
Pp3c5_28640 Physcomitrium patens HOM05D005917 ORTHO05D007517 1.4e-114 417.5 531 49.5
CDE09G1298 Ceratophyllum demersum HOM05D005917 ORTHO05D007517 2.5e-111 406.8 293 68.3
MELO3C024210.2 Cucumis melo HOM05D005917 ORTHO05D007517 1.3e-107 394.4 291 69.1
SMO347G0414 Selaginella moellendorffii HOM05D005917 ORTHO05D007517 4.0e-101 372.9 493 47.7
CBR_g39617 Chara braunii HOM05D005917 ORTHO05D007517 1.9e-87 327.4 548 41.2
Migut.L01336 Erythranthe guttata HOM05D005917 ORTHO05D007517 5.1e-80 302.8 513 42.3
HanXRQChr11g0328131 Helianthus annuus HOM05D005917 ORTHO05D007517 1.6e-60 238.0 283 49.1
AagrBONN_evm.TU.Sc2ySwM_344.1277 Anthoceros agrestis HOM05D005917 ORTHO05D007517 2.9e-51 207.2 341 40.2
Sed0013022 Sechium edule HOM05D005917 ORTHO05D007517 2.9e-51 207.2 202 57.9
TPR.G18819 Trifolium pratense HOM05D005917 ORTHO05D007517 3.4e-39 167.2 279 39.4
Prupe.3G225800 Prunus persica HOM05D005917 ORTHO05D007517 6.2e-25 119.8 100 65.0
Cre11.g482050 Chlamydomonas reinhardtii HOM05D005917 ORTHO05D007517 8.9e-24 115.9 492 26.6
FAN14G5926 Fragaria x ananassa HOM05D005917 ORTHO05D007517 1.3e-22 112.1 81 65.4
MCO15G396 Micromonas commoda HOM05D005917 ORTHO05D007517 5.4e-21 106.7 445 26.7
Manes.16G064350 Manihot esculenta HOM05D005917 ORTHO05D007517 8.6e-19 99.4 72 72.2
FAN02G4549 Fragaria x ananassa HOM05D005917 ORTHO05D007517 3.8e-14 84.0 56 69.6
CAN.G244.10 Capsicum annuum HOM05D000180 ORTHO05D000099 4.2e-13 80.5 79 49.4
Nn6g32049 Nelumbo nucifera HOM05D005917 ORTHO05D007517 2.1e-12 78.2 63 57.1
Cfa024500 Carpinus fangiana HOM05D005917 ORTHO05D007517 4.8e-09 67.0 178 29.8
Nn6g32048 Nelumbo nucifera HOM05D005917 ORTHO05D007517 9.0e-08 62.8 49 71.4


User provided reference genes

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