Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s0734 Capsella rubella HOM05D004304 ORTHO05D005229 3.5e-70 268.1 126 100.0
BcaC05g29569 Brassica carinata HOM05D004304 ORTHO05D005229 5.0e-69 264.2 126 99.2
A05p40460 Brassica napus HOM05D004304 ORTHO05D005229 5.0e-69 264.2 126 99.2
C05p59560 Brassica napus HOM05D004304 ORTHO05D005229 5.0e-69 264.2 126 99.2
BolC5t34611H Brassica oleracea HOM05D004304 ORTHO05D005229 5.0e-69 264.2 126 99.2
BraA05t22779Z Brassica rapa HOM05D004304 ORTHO05D005229 5.0e-69 264.2 126 99.2
CARHR082470 Cardamine hirsuta HOM05D004304 ORTHO05D005229 8.5e-69 263.5 126 98.4
Thhalv10021767m.g Eutrema salsugineum HOM05D004304 ORTHO05D005229 8.5e-69 263.5 126 98.4
Sp3g06690 Schrenkiella parvula HOM05D004304 ORTHO05D005229 8.5e-69 263.5 126 98.4
AL3G19120 Arabidopsis lyrata HOM05D004304 ORTHO05D005229 5.5e-68 260.8 126 96.8
AT3G07760 Arabidopsis thaliana HOM05D004304 ORTHO05D005229 5.5e-68 260.8 126 96.8
BcaB03g14683 Brassica carinata HOM05D004304 ORTHO05D005229 2.7e-67 258.5 125 97.6
BcaB04g21271 Brassica carinata HOM05D004304 ORTHO05D005229 6.1e-67 257.3 127 97.6
BcaC09g47944 Brassica carinata HOM05D004304 ORTHO05D005229 6.1e-67 257.3 127 97.6
BolC1t05535H Brassica oleracea HOM05D004304 ORTHO05D005229 6.1e-67 257.3 127 97.6
BraA01t04365Z Brassica rapa HOM05D004304 ORTHO05D005229 8.0e-67 256.9 127 96.9
A03p35420 Brassica napus HOM05D004304 ORTHO05D005229 8.8e-66 253.4 126 95.2
BraA03t12719Z Brassica rapa HOM05D004304 ORTHO05D005229 1.5e-65 252.7 126 94.4
THA.LOC104819042 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 1.1e-63 246.5 124 92.7
Duzib138G0739 Durio zibethinus HOM05D004304 ORTHO05D005229 3.1e-63 245.0 126 90.5
Duzib138G1664 Durio zibethinus HOM05D004304 ORTHO05D005229 3.1e-63 245.0 126 90.5
Duzib133G1241 Durio zibethinus HOM05D004304 ORTHO05D005229 4.1e-63 244.6 124 91.9
DCAR_019709 Daucus carota HOM05D004304 ORTHO05D005229 5.4e-63 244.2 126 88.9
Prupe.3G200700 Prunus persica HOM05D004304 ORTHO05D005229 9.1e-63 243.4 124 91.1
Thecc.01G191600 Theobroma cacao HOM05D004304 ORTHO05D005229 1.2e-62 243.0 124 91.1
AUR62017517 Chenopodium quinoa HOM05D004304 ORTHO05D005229 2.0e-62 242.3 124 91.1
Gohir.A11G149700 Gossypium hirsutum HOM05D004304 ORTHO05D005229 2.0e-62 242.3 124 89.5
Gohir.D11G156380 Gossypium hirsutum HOM05D004304 ORTHO05D005229 2.0e-62 242.3 124 89.5
Gorai.007G166800 Gossypium raimondii HOM05D004304 ORTHO05D005229 2.0e-62 242.3 124 89.5
THA.LOC104826653 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 2.0e-62 242.3 124 91.1
Manes.12G061000 Manihot esculenta HOM05D004304 ORTHO05D005229 2.7e-62 241.9 124 90.3
FvH4_6g40920 Fragaria vesca HOM05D004304 ORTHO05D005229 4.5e-62 241.1 124 90.3
FAN02G3860 Fragaria x ananassa HOM05D004304 ORTHO05D005229 4.5e-62 241.1 124 90.3
FAN05G0096 Fragaria x ananassa HOM05D004304 ORTHO05D005229 4.5e-62 241.1 124 90.3
MD09G1123200 Malus domestica HOM05D004304 ORTHO05D005229 4.5e-62 241.1 124 90.3
Nitab4.5_0000441g0110 Nicotiana tabacum HOM05D004304 ORTHO05D005229 4.5e-62 241.1 124 89.5
RcHm_v2.0_Chr2g0156501 Rosa chinensis HOM05D004304 ORTHO05D005229 4.5e-62 241.1 124 90.3
GSVIVG01030050001 Vitis vinifera HOM05D004304 ORTHO05D005229 4.5e-62 241.1 124 89.5
Aa31LG5G18330 Aethionema arabicum HOM05D004304 ORTHO05D005229 7.7e-62 240.4 149 80.5
Ciclev10017178m.g Citrus clementina HOM05D004304 ORTHO05D005229 7.7e-62 240.4 124 90.3
Cc00_g07360 Coffea canephora HOM05D004304 ORTHO05D005229 1.0e-61 240.0 124 90.3
Nitab4.5_0004642g0020 Nicotiana tabacum HOM05D004304 ORTHO05D005229 1.0e-61 240.0 124 89.5
Atru.chr6.3369 Acer truncatum HOM05D004304 ORTHO05D005229 1.3e-61 239.6 124 90.3
CSS0022075 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 1.3e-61 239.6 124 89.5
CAN.G854.8 Capsicum annuum HOM05D004304 ORTHO05D005229 1.3e-61 239.6 124 89.5
Dinv07865 Davidia involucrata HOM05D004304 ORTHO05D005229 1.3e-61 239.6 124 90.3
FAN09G2975 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.3e-61 239.6 124 89.5
Actinidia21445 Actinidia chinensis HOM05D004304 ORTHO05D005229 1.7e-61 239.2 124 89.5
CANSAT64G1042 Cannabis sativa HOM05D004304 ORTHO05D005229 2.3e-61 238.8 124 89.5
PGR042G2803 Punica granatum HOM05D004304 ORTHO05D005229 2.9e-61 238.4 124 88.7
TWI75G1244 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 2.9e-61 238.4 124 89.5
FAN14G5814 Fragaria x ananassa HOM05D004304 ORTHO05D005229 3.8e-61 238.0 124 89.5
MD17G1113700 Malus domestica HOM05D004304 ORTHO05D005229 3.8e-61 238.0 124 89.5
TWI18G0278 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 3.8e-61 238.0 124 89.5
Os12g0514600 Oryza sativa ssp. japonica HOM05D004304 ORTHO05D005229 6.6e-61 237.3 124 89.5
Sopen07g024320 Solanum pennellii HOM05D004304 ORTHO05D005229 6.6e-61 237.3 124 87.9
PGSC0003DMG400006152 Solanum tuberosum HOM05D004304 ORTHO05D005229 6.6e-61 237.3 124 87.9
CiPaw.03G279300 Carya illinoinensis HOM05D004304 ORTHO05D005229 8.6e-61 236.9 124 88.7
Hma1.2p1_0133F.1_g061310 Hydrangea macrophylla HOM05D004304 ORTHO05D005229 8.6e-61 236.9 124 88.7
Aqoxy1G04225 Aquilegia oxysepala HOM05D004304 ORTHO05D005229 1.1e-60 236.5 124 87.9
Eucgr.A01049 Eucalyptus grandis HOM05D004304 ORTHO05D005229 1.1e-60 236.5 124 87.9
Gohir.D07G092500 Gossypium hirsutum HOM05D004304 ORTHO05D005229 1.1e-60 236.5 124 88.7
Gorai.001G099100 Gossypium raimondii HOM05D004304 ORTHO05D005229 1.1e-60 236.5 124 88.7
HanXRQChr03g0075261 Helianthus annuus HOM05D004304 ORTHO05D005229 1.1e-60 236.5 124 87.1
RcHm_v2.0_Chr7g0226381 Rosa chinensis HOM05D004304 ORTHO05D005229 1.1e-60 236.5 124 87.9
Sc20g0003970 Simmondsia chinensis HOM05D004304 ORTHO05D005229 1.5e-60 236.1 122 90.2
Gohir.A07G087600 Gossypium hirsutum HOM05D004304 ORTHO05D005229 1.9e-60 235.7 124 87.9
Potri.014G165300 Populus trichocarpa HOM05D004304 ORTHO05D005229 1.9e-60 235.7 124 87.1
vmacro12102 Vaccinium macrocarpon HOM05D004304 ORTHO05D005229 1.9e-60 235.7 124 87.1
ClCG02G009350 Citrullus lanatus HOM05D004304 ORTHO05D005229 2.5e-60 235.3 124 87.9
PGR142G2829 Punica granatum HOM05D004304 ORTHO05D005229 2.5e-60 235.3 124 88.7
Sed0000663 Sechium edule HOM05D004304 ORTHO05D005229 2.5e-60 235.3 124 87.9
Solyc12g006160.2 Solanum lycopersicum HOM05D004304 ORTHO05D005229 2.5e-60 235.3 124 87.9
Sopen12g002110 Solanum pennellii HOM05D004304 ORTHO05D005229 2.5e-60 235.3 124 87.9
MSTRG.14924 Avicennia marina HOM05D004304 ORTHO05D005229 3.3e-60 235.0 122 88.5
CAN.G294.16 Capsicum annuum HOM05D004304 ORTHO05D005229 3.3e-60 235.0 124 87.9
PGSC0003DMG400028823 Solanum tuberosum HOM05D004304 ORTHO05D005229 3.3e-60 235.0 124 87.1
Actinidia07885 Actinidia chinensis HOM05D004304 ORTHO05D005229 4.2e-60 234.6 124 86.3
CsaV3_6G009500 Cucumis sativus L. HOM05D004304 ORTHO05D005229 7.2e-60 233.8 124 87.1
vmacro09397 Vaccinium macrocarpon HOM05D004304 ORTHO05D005229 7.2e-60 233.8 124 85.5
CSS0042456 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 9.5e-60 233.4 124 87.1
Gohir.A07G170000 Gossypium hirsutum HOM05D004304 ORTHO05D005229 9.5e-60 233.4 126 85.7
Nn1g07447 Nelumbo nucifera HOM05D004304 ORTHO05D005229 1.2e-59 233.0 124 86.3
CiPaw.04G196300 Carya illinoinensis HOM05D004304 ORTHO05D005229 1.6e-59 232.6 126 84.9
FvH4_5g30980 Fragaria vesca HOM05D004304 ORTHO05D005229 1.6e-59 232.6 123 87.8
FAN08G1359 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.6e-59 232.6 123 87.8
FAN13G0518 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.6e-59 232.6 123 87.8
FAN18G2534 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.6e-59 232.6 123 87.8
MSTRG.6645 Avicennia marina HOM05D004304 ORTHO05D005229 2.1e-59 232.3 122 87.7
MELO3C025975.2 Cucumis melo HOM05D004304 ORTHO05D005229 2.8e-59 231.9 124 86.3
Nitab4.5_0001229g0110 Nicotiana tabacum HOM05D004304 ORTHO05D005229 2.8e-59 231.9 124 87.1
Nitab4.5_0005511g0040 Nicotiana tabacum HOM05D004304 ORTHO05D005229 2.8e-59 231.9 124 87.1
Gohir.D07G171200 Gossypium hirsutum HOM05D004304 ORTHO05D005229 8.0e-59 230.3 126 84.9
Gorai.001G191600 Gossypium raimondii HOM05D004304 ORTHO05D005229 8.0e-59 230.3 126 84.9
Zm00001eb166190 Zea mays HOM05D004304 ORTHO05D005229 8.0e-59 230.3 126 85.7
TAR627G0777 Trochodendron aralioides HOM05D004304 ORTHO05D005229 1.0e-58 229.9 124 85.5
Actinidia09779 Actinidia chinensis HOM05D004304 ORTHO05D005229 1.4e-58 229.6 124 84.7
Zm00001eb137890 Zea mays HOM05D004304 ORTHO05D005229 1.4e-58 229.6 124 84.7
Lalb_Chr10g0107601 Lupinus albus HOM05D004304 ORTHO05D005229 1.8e-58 229.2 124 85.5
PSO302G0206 Papaver somniferum HOM05D004304 ORTHO05D005229 1.8e-58 229.2 124 84.7
PSO210G6619 Papaver somniferum HOM05D004304 ORTHO05D005229 2.3e-58 228.8 124 83.9
TPR.G1269 Trifolium pratense HOM05D004304 ORTHO05D005229 2.3e-58 228.8 124 85.5
TAR624G1210 Trochodendron aralioides HOM05D004304 ORTHO05D005229 2.3e-58 228.8 124 84.7
Glyma.02G305100 Glycine max HOM05D004304 ORTHO05D005229 3.0e-58 228.4 124 85.5
Medtr5g097240 Medicago truncatula HOM05D004304 ORTHO05D005229 3.0e-58 228.4 124 85.5
Phvul.008G284800 Phaseolus vulgaris HOM05D004304 ORTHO05D005229 3.0e-58 228.4 124 85.5
ATR1149G091 Amborella trichopoda HOM05D004304 ORTHO05D005229 1.2e-57 226.5 124 83.9
Glyma.14G008300 Glycine max HOM05D004304 ORTHO05D005229 1.5e-57 226.1 124 84.7
Zm00001eb264410 Zea mays HOM05D004304 ORTHO05D005229 1.5e-57 226.1 124 83.9
LjContig00081g0006376 Lotus japonicus HOM05D004304 ORTHO05D005229 2.0e-57 225.7 124 83.9
Lalb_Chr04g0247321 Lupinus albus HOM05D004304 ORTHO05D005229 2.6e-57 225.3 124 83.9
Lalb_Chr04g0247511 Lupinus albus HOM05D004304 ORTHO05D005229 2.6e-57 225.3 124 83.9
Migut.M00031 Erythranthe guttata HOM05D004304 ORTHO05D005229 3.4e-57 224.9 118 89.8
Oeu012343.5 Olea europaea HOM05D005707 ORTHO05D007276 5.7e-57 224.2 122 83.6
arahy.Tifrunner.gnm1.ann1.40Z2MJ Arachis hypogaea HOM05D004304 ORTHO05D005229 9.8e-57 223.4 124 83.1
arahy.Tifrunner.gnm1.ann1.F2KZWM Arachis hypogaea HOM05D004304 ORTHO05D005229 9.8e-57 223.4 124 83.1
SGA_v2.0_scaffold181G39677 Striga asiatica HOM05D004304 ORTHO05D005229 2.2e-56 222.2 122 85.2
TWI36G1037 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 2.2e-56 222.2 155 71.6
HPP92_009568 Vanilla planifolia HOM05D004304 ORTHO05D005229 2.2e-56 222.2 118 86.4
HanXRQChr10g0306431 Helianthus annuus HOM05D004304 ORTHO05D005229 1.1e-55 219.9 126 82.5
ECA240G0131 Erigeron canadensis HOM05D001343 ORTHO05D002008 1.6e-54 216.1 112 86.6
SEGI_33416 Sequoiadendron giganteum HOM05D004304 ORTHO05D005229 4.6e-54 214.5 118 84.7
Rhsim04G0038800 Rhododendron simsii HOM05D004304 ORTHO05D005229 1.7e-53 212.6 169 63.3
CDE07G1815 Ceratophyllum demersum HOM05D004304 ORTHO05D005229 3.9e-53 211.5 124 78.2
SGA_v2.0_scaffold73G24513 Striga asiatica HOM05D004304 ORTHO05D005229 1.1e-52 209.9 128 78.1
CDE04G0517 Ceratophyllum demersum HOM05D004304 ORTHO05D005229 1.5e-52 209.5 124 76.6
Eucgr.K00654 Eucalyptus grandis HOM05D004304 ORTHO05D005229 5.6e-52 207.6 112 85.7
unitig_37.g12596 Utricularia gibba HOM05D004304 ORTHO05D005229 7.3e-52 207.2 126 79.4
SMO147G0193 Selaginella moellendorffii HOM05D004304 ORTHO05D005229 4.7e-51 204.5 124 75.0
MSTRG.12237 Avicennia marina HOM05D004304 ORTHO05D005229 1.0e-50 203.4 122 79.5
SEGI_10863 Sequoiadendron giganteum HOM05D004304 ORTHO05D005229 1.0e-50 203.4 124 73.4
MBI16_g26392_MAGBIO Magnolia biondii HOM05D004304 ORTHO05D005229 2.3e-50 202.2 112 84.8
Peaxi162Scf00047g02135 Petunia axillaris HOM05D004304 ORTHO05D005229 1.5e-49 199.5 110 85.5
TAR624G0596 Trochodendron aralioides HOM05D004304 ORTHO05D005229 2.0e-49 199.1 107 86.0
THA.LOC109116190 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 3.4e-49 198.4 106 89.6
BcaC01g04291 Brassica carinata HOM05D000074 ORTHO05D001293 6.0e-46 187.6 134 72.4
FAN04G0826 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.5e-44 183.0 147 64.6
Lsat_1_v5_gn_9_104560 Lactuca sativa HOM05D004304 ORTHO05D005229 6.8e-42 174.1 124 70.2
CSS0024587 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 1.1e-39 166.8 98 83.7
Dinv05830 Davidia involucrata HOM05D004304 ORTHO05D005229 2.4e-39 165.6 111 70.3
Dinv21270 Davidia involucrata HOM05D004304 ORTHO05D005229 4.6e-38 161.4 87 83.9
AUR62015060 Chenopodium quinoa HOM05D004304 ORTHO05D005229 1.0e-37 160.2 124 65.3
QL08p028475 Quercus lobata HOM05D004304 ORTHO05D005229 1.0e-37 160.2 82 89.0
Manes.13G062800 Manihot esculenta HOM05D004304 ORTHO05D005229 2.3e-37 159.1 82 87.8
BcaB04g17145 Brassica carinata HOM05D004304 ORTHO05D000003 3.0e-37 158.7 80 93.8
Haze_12682 Corylus avellana HOM05D004304 ORTHO05D005229 6.6e-37 157.5 82 87.8
Sed0023039 Sechium edule HOM05D004304 ORTHO05D005229 1.5e-36 156.4 85 83.5
DCAR_012907 Daucus carota HOM05D004304 ORTHO05D005229 5.6e-36 154.5 77 92.2
VMungo0647G2439 Vigna mungo HOM05D004304 ORTHO05D005229 2.1e-35 152.5 82 85.4
SalBow7G0104 Salvia bowleyana HOM05D004304 ORTHO05D005229 1.8e-34 149.4 76 89.5
Psat2g004600 Pisum sativum HOM05D004304 ORTHO05D005229 4.0e-34 148.3 82 81.7
BcaB01g01337 Brassica carinata HOM05D004304 ORTHO05D005229 5.2e-34 147.9 73 93.2
Oeu040468.1 Olea europaea HOM05D004304 ORTHO05D005229 5.2e-34 147.9 76 90.8
DCAR_021105 Daucus carota HOM05D004304 ORTHO05D005229 8.9e-34 147.1 126 60.3
FAN04G0834 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.2e-33 146.7 177 47.5
Sabra14G0125900 Salix brachista HOM05D004304 ORTHO05D005229 2.2e-32 142.5 110 64.5
Oeu063643.1 Olea europaea HOM05D004304 ORTHO05D005229 8.4e-32 140.6 76 86.8
unitig_46.g18340 Utricularia gibba HOM05D004304 ORTHO05D005229 1.9e-31 139.4 127 57.5
C03p43050 Brassica napus HOM05D004304 ORTHO05D005229 1.3e-29 133.3 123 58.5
BolC3t16573H Brassica oleracea HOM05D004304 ORTHO05D005229 1.3e-29 133.3 123 58.5
Cpa.g.c46948 Carica papaya HOM05D004304 ORTHO05D005229 6.2e-27 124.4 64 90.6
SHI10146 Sapria himalayana HOM05D004304 ORTHO05D005229 2.4e-26 122.5 70 82.9
Hund21536 Selenicereus undatus HOM05D004304 ORTHO05D005229 1.1e-23 113.6 58 86.2
BcaB03g16127 Brassica carinata HOM05D004304 ORTHO05D005229 1.9e-23 112.8 57 91.2
Ah.01g002230 Amaranthus hybridus HOM05D004304 ORTHO05D005229 3.9e-21 105.1 74 68.9
Nn1g03242 Nelumbo nucifera HOM05D004304 ORTHO05D005229 7.1e-15 84.3 42 92.9


User provided reference genes

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