Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s0731 Capsella rubella HOM05D009282 ORTHO05D003486 7.0e-287 989.9 508 100.0
AL3G19090 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 8.5e-160 567.8 551 63.0
AT3G07730 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 1.6e-142 510.4 519 61.3
AT4G01170 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 7.0e-138 495.0 471 63.7
CARHR082440 Cardamine hirsuta HOM05D009282 ORTHO05D003486 2.7e-129 466.5 495 59.2
Sp3g06660 Schrenkiella parvula HOM05D009282 ORTHO05D003486 5.3e-101 372.5 546 46.7
Thhalv10020550m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 1.1e-95 354.8 501 46.7
BolC1t05537H Brassica oleracea HOM05D009282 ORTHO05D003486 8.5e-75 285.4 469 44.3
SpUn0522_0010 Schrenkiella parvula HOM05D009282 ORTHO05D003486 1.4e-69 268.1 363 47.9
BraA01t04367Z Brassica rapa HOM05D009282 ORTHO05D003486 4.1e-69 266.5 498 40.2
C05p59590 Brassica napus HOM05D009282 ORTHO05D003486 2.5e-58 230.7 512 38.1
BraA05t22782Z Brassica rapa HOM05D009282 ORTHO05D003486 7.2e-58 229.2 510 37.5
A05p40490 Brassica napus HOM05D009282 ORTHO05D003486 1.2e-57 228.4 527 36.4
BcaB04g21273 Brassica carinata HOM05D009282 ORTHO05D003486 1.8e-56 224.6 520 36.5
BolC5t34614H Brassica oleracea HOM05D009282 ORTHO05D003486 3.0e-56 223.8 513 36.5
BcaC05g29566 Brassica carinata HOM05D009282 ORTHO05D003486 2.6e-55 220.7 254 53.9
Aa31LG7G5540 Aethionema arabicum HOM05D012602 ORTHO05D003486 1.8e-37 161.4 328 35.7
Carub.0001s2100 Capsella rubella HOM05D012602 ORTHO05D003486 6.6e-35 152.9 250 40.4
AL1G34710 Arabidopsis lyrata HOM05D012602 ORTHO05D003486 1.6e-33 148.3 231 39.8
CARHR021930 Cardamine hirsuta HOM05D012602 ORTHO05D003486 1.0e-32 145.6 223 38.6
Thhalv10007934m.g Eutrema salsugineum HOM05D012602 ORTHO05D003486 3.0e-32 144.1 323 35.0
AT1G21560 Arabidopsis thaliana HOM05D012602 ORTHO05D003486 7.5e-31 139.4 226 39.4
AL2G37450 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 5.0e-27 126.7 302 32.8
Thhalv10018476m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 5.0e-27 126.7 515 27.8
BcaB05g25029 Brassica carinata HOM05D009282 ORTHO05D003486 1.5e-26 125.2 221 37.6
Sp5g32440 Schrenkiella parvula HOM05D009282 ORTHO05D003486 3.3e-26 124.0 386 29.8
Carub.0002s2415 Capsella rubella HOM05D009282 ORTHO05D003486 4.3e-26 123.6 301 31.9
CARHR070750 Cardamine hirsuta HOM05D009282 ORTHO05D003486 9.5e-26 122.5 340 31.5
AT1G77270 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 8.0e-25 119.4 491 28.1
THA.LOC104813683 Tarenaya hassleriana HOM05D009282 ORTHO05D003486 1.8e-24 118.2 190 39.5
THA.LOC104812078 Tarenaya hassleriana HOM05D006236 ORTHO05D003486 2.3e-24 117.9 330 33.3
BolC2t09471H Brassica oleracea HOM05D009282 ORTHO05D003486 3.1e-24 117.5 160 41.9
Sp1g19100 Schrenkiella parvula HOM05D012602 ORTHO05D003486 3.1e-24 117.5 248 33.1
BcaC05g26073 Brassica carinata HOM05D012602 ORTHO05D003486 2.0e-23 114.8 243 33.7
C02p34410 Brassica napus HOM05D009282 ORTHO05D003486 2.6e-23 114.4 345 28.7
BraA02t07136Z Brassica rapa HOM05D009282 ORTHO05D003486 2.6e-23 114.4 373 29.0
BcaC03g15725 Brassica carinata HOM05D009282 ORTHO05D003486 4.4e-23 113.6 345 28.7
C05p20560 Brassica napus HOM05D012602 ORTHO05D003486 7.5e-23 112.8 243 33.3
BolC5t30754H Brassica oleracea HOM05D012602 ORTHO05D003486 7.5e-23 112.8 243 33.3
Sp7g09570 Schrenkiella parvula HOM05D009282 ORTHO05D003486 2.2e-22 111.3 144 51.4
A02p21190 Brassica napus HOM05D009282 ORTHO05D003486 8.3e-22 109.4 383 27.7
Manes.02G169100 Manihot esculenta HOM05D006236 ORTHO05D003486 5.4e-21 106.7 162 37.7
A06p17650 Brassica napus HOM05D012602 ORTHO05D003486 2.0e-20 104.8 121 44.6
BraA06t24857Z Brassica rapa HOM05D012602 ORTHO05D003486 2.0e-20 104.8 121 44.6
Aa31LG4G7280 Aethionema arabicum HOM05D009282 ORTHO05D003486 3.0e-19 100.9 145 40.7
CiPaw.03G184300 Carya illinoinensis HOM05D006236 ORTHO05D003486 5.0e-19 100.1 165 38.2
Oeu047174.1 Olea europaea HOM05D006236 ORTHO05D003486 5.6e-18 96.7 118 40.7
CAN.G1187.8 Capsicum annuum HOM05D012804 ORTHO05D003486 7.3e-18 96.3 116 41.4
Gohir.D02G077800 Gossypium hirsutum HOM05D006236 ORTHO05D003486 7.3e-18 96.3 161 37.3
TAR625G0695 Trochodendron aralioides HOM05D006236 ORTHO05D003486 7.3e-18 96.3 153 39.9
PGR044G2319 Punica granatum HOM05D006236 ORTHO05D003486 4.7e-17 93.6 159 34.0
GSVIVG01008800001 Vitis vinifera HOM05D006236 ORTHO05D003486 6.2e-17 93.2 156 37.2
Thecc.08G133800 Theobroma cacao HOM05D006236 ORTHO05D003486 8.1e-17 92.8 155 40.0
Potri.002G077500 Populus trichocarpa HOM05D006236 ORTHO05D003486 1.1e-16 92.4 148 38.5
Nn5g28446 Nelumbo nucifera HOM05D006236 ORTHO05D003486 1.4e-16 92.0 141 41.1
SGA_v2.0_scaffold28G11968 Striga asiatica HOM05D006236 ORTHO05D003486 2.3e-16 91.3 111 45.9
Atru.chr13.1589 Acer truncatum HOM05D006236 ORTHO05D003486 1.2e-15 89.0 144 41.7
Medtr1g026790 Medicago truncatula HOM05D006236 ORTHO05D003486 1.5e-15 88.6 192 34.9
Peaxi162Scf00234g00718 Petunia axillaris HOM05D012804 ORTHO05D003486 4.4e-15 87.0 103 39.8
QL09p032233 Quercus lobata HOM05D006236 ORTHO05D003486 5.8e-15 86.7 149 38.9
Manes.18G083050 Manihot esculenta HOM05D006236 ORTHO05D003486 7.5e-15 86.3 160 33.8
Psat0s1315g0200 Pisum sativum HOM05D006236 ORTHO05D003486 9.8e-15 85.9 260 29.2
Dinv14700 Davidia involucrata HOM05D006236 ORTHO05D003486 1.7e-14 85.1 182 35.2
SpUn0565_0010 Schrenkiella parvula HOM05D009282 ORTHO05D003486 2.2e-14 84.7 134 47.0
Migut.N03258 Erythranthe guttata HOM05D006236 ORTHO05D003486 3.7e-14 84.0 111 42.3
TWI60G0548 Tripterygium wilfordii HOM05D006236 ORTHO05D003486 6.4e-14 83.2 172 35.5
Cfa012635 Carpinus fangiana HOM05D006236 ORTHO05D003486 8.3e-14 82.8 99 41.4
DCAR_028204 Daucus carota HOM05D006236 ORTHO05D003486 8.3e-14 82.8 150 36.0
Medtr2g010820 Medicago truncatula HOM05D006236 ORTHO05D003486 8.3e-14 82.8 185 34.6
TPR.G32494 Trifolium pratense HOM05D006236 ORTHO05D003486 1.1e-13 82.4 151 34.4
Eucgr.E01002 Eucalyptus grandis HOM05D006236 ORTHO05D003486 1.9e-13 81.6 122 43.4
Nitab4.5_0000205g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 1.9e-13 81.6 101 38.6
CiPaw.11G076600 Carya illinoinensis HOM05D006236 ORTHO05D003486 4.1e-13 80.5 153 35.3
Oeu016130.1 Olea europaea HOM05D006236 ORTHO05D003486 5.4e-13 80.1 153 32.7
Phvul.001G067500 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 5.4e-13 80.1 165 32.7
Ciclev10000428m.g Citrus clementina HOM05D006236 ORTHO05D003486 7.1e-13 79.7 143 35.0
FAN15G3020 Fragaria x ananassa HOM05D006236 ORTHO05D003486 7.1e-13 79.7 155 34.8
Glyma.06G159000 Glycine max HOM05D006236 ORTHO05D003486 9.2e-13 79.3 149 36.9
Glyma.14G156000 Glycine max HOM05D006236 ORTHO05D003486 9.2e-13 79.3 214 29.9
MSTRG.24177 Avicennia marina HOM05D006236 ORTHO05D003486 2.7e-12 77.8 148 32.4
Sabra02G0060900 Salix brachista HOM05D006236 ORTHO05D003486 2.7e-12 77.8 511 25.6
VMungo1309G0219 Vigna mungo HOM05D006236 ORTHO05D003486 2.7e-12 77.8 100 44.0
ATR0824G107 Amborella trichopoda HOM05D049392 ORTHO05D003486 4.6e-12 77.0 118 39.8
RcHm_v2.0_Chr6g0296811 Rosa chinensis HOM05D006236 ORTHO05D003486 4.6e-12 77.0 156 35.3
Glyma.13G034700 Glycine max HOM05D006236 ORTHO05D003486 6.0e-12 76.6 272 28.3
HPP92_008975 Vanilla planifolia HOM05D006236 ORTHO05D003486 1.0e-11 75.9 99 38.4
Phvul.009G156700 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 1.7e-11 75.1 199 32.7
Gorai.005G087400 Gossypium raimondii HOM05D006236 ORTHO05D003486 2.3e-11 74.7 134 36.6
Oeu042695.1 Olea europaea HOM05D006236 ORTHO05D003486 2.3e-11 74.7 88 45.5
TPR.G24541 Trifolium pratense HOM05D006236 ORTHO05D003486 3.0e-11 74.3 153 33.3
Duzib093G1452 Durio zibethinus HOM05D006236 ORTHO05D003486 3.9e-11 73.9 251 30.7
Glyma.04G206551 Glycine max HOM05D006236 ORTHO05D003486 3.9e-11 73.9 143 33.6
Haze_03510 Corylus avellana HOM05D006236 ORTHO05D003486 5.1e-11 73.6 135 33.3
CDE02G3425 Ceratophyllum demersum HOM05D006236 ORTHO05D003486 6.6e-11 73.2 115 41.7
QL12p002389 Quercus lobata HOM05D006236 ORTHO05D003486 6.6e-11 73.2 99 39.4
Os05g0423200 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 8.6e-11 72.8 99 42.4
Sed0000792 Sechium edule HOM05D006236 ORTHO05D003486 8.6e-11 72.8 115 35.7
Prupe.1G488800 Prunus persica HOM05D006236 ORTHO05D003486 1.1e-10 72.4 251 27.9
Solyc11g072250.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 1.1e-10 72.4 103 34.0
Sopen11g029920 Solanum pennellii HOM05D012804 ORTHO05D003486 1.1e-10 72.4 103 34.0
Lj1g0007441 Lotus japonicus HOM05D006236 ORTHO05D003486 1.5e-10 72.0 157 35.7
SalBow2G2217 Salvia bowleyana HOM05D006236 ORTHO05D003486 1.5e-10 72.0 174 30.5
ClCG09G021830 Citrullus lanatus HOM05D006236 ORTHO05D003486 1.9e-10 71.6 155 32.9
CANSAT78G2054 Cannabis sativa HOM05D006236 ORTHO05D003486 2.5e-10 71.2 211 28.0
Gohir.A02G070600 Gossypium hirsutum HOM05D006236 ORTHO05D003486 2.5e-10 71.2 172 30.8
Medtr1g026800 Medicago truncatula HOM05D006236 ORTHO05D003486 2.5e-10 71.2 135 35.6
Mapoly0015s0190 Marchantia polymorpha HOM05D006236 ORTHO05D003486 4.3e-10 70.5 103 37.9
Nitab4.5_0011766g0010 Nicotiana tabacum HOM05D012804 ORTHO05D003486 4.3e-10 70.5 158 31.6
PSO528G0175 Papaver somniferum HOM05D020877 ORTHO05D003486 4.3e-10 70.5 105 36.2
CsaV3_7G022170 Cucumis sativus L. HOM05D006236 ORTHO05D003486 5.6e-10 70.1 154 31.2
Pp3c8_15980 Physcomitrium patens HOM05D006236 ORTHO05D003486 5.6e-10 70.1 99 37.4
Medtr1g026810 Medicago truncatula HOM05D006236 ORTHO05D003486 7.3e-10 69.7 179 31.8
PGSC0003DMG400004651 Solanum tuberosum HOM05D012804 ORTHO05D003486 7.3e-10 69.7 110 37.3
Nitab4.5_0001925g0210 Nicotiana tabacum HOM05D012804 ORTHO05D003486 9.5e-10 69.3 158 31.6
PSO170G3037 Papaver somniferum HOM05D020877 ORTHO05D003486 9.5e-10 69.3 119 33.6
CANSAT78G1984 Cannabis sativa HOM05D006236 ORTHO05D003486 1.2e-09 68.9 122 35.2
Lalb_Chr08g0237871 Lupinus albus HOM05D006236 ORTHO05D003486 1.2e-09 68.9 99 35.4
SMO147G0016 Selaginella moellendorffii HOM05D006236 ORTHO05D003486 1.2e-09 68.9 160 28.8
PSO528G0080 Papaver somniferum HOM05D020877 ORTHO05D003486 1.6e-09 68.6 115 38.3
Peaxi162Scf00062g00089 Petunia axillaris HOM05D012804 ORTHO05D003486 1.6e-09 68.6 92 38.0
SMO196G0029 Selaginella moellendorffii HOM05D002377 ORTHO05D003486 1.6e-09 68.6 99 38.4
Solyc12g099920.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 1.6e-09 68.6 110 36.4
Ca_17011_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 2.1e-09 68.2 99 38.4
MD15G1133200 Malus domestica HOM05D006236 ORTHO05D003486 2.1e-09 68.2 111 36.0
Sopen12g034540 Solanum pennellii HOM05D012804 ORTHO05D003486 2.8e-09 67.8 110 36.4
MSTRG.25355 Avicennia marina HOM05D006236 ORTHO05D003486 3.6e-09 67.4 147 32.7
COL.COLO4_33391 Corchorus olitorius HOM05D006236 ORTHO05D003486 3.6e-09 67.4 143 34.3
Os04g0221000 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 3.6e-09 67.4 102 34.3
PSO170G0742 Papaver somniferum HOM05D020877 ORTHO05D003486 3.6e-09 67.4 115 37.4
Pp3c14_13780 Physcomitrium patens HOM05D002377 ORTHO05D003486 3.6e-09 67.4 99 39.4
Cfa010576 Carpinus fangiana HOM05D006236 ORTHO05D003486 4.7e-09 67.0 117 38.5
Dinv27264 Davidia involucrata HOM05D006236 ORTHO05D003486 1.1e-08 65.9 150 32.7
FvH4_2g27980 Fragaria vesca HOM05D006236 ORTHO05D003486 1.4e-08 65.5 159 32.1
CANSAT78G0622 Cannabis sativa HOM05D006236 ORTHO05D003486 1.8e-08 65.1 124 31.5
FvH4_2g27990 Fragaria vesca HOM05D006236 ORTHO05D003486 1.8e-08 65.1 162 30.2
RcHm_v2.0_Chr6g0296801 Rosa chinensis HOM05D006236 ORTHO05D003486 1.8e-08 65.1 157 31.2
Os04g0539100 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 2.3e-08 64.7 102 35.3
Sed0021928 Sechium edule HOM05D006236 ORTHO05D003486 2.3e-08 64.7 196 27.6
Zm00001eb385310 Zea mays HOM05D006236 ORTHO05D003486 2.3e-08 64.7 146 33.6
CAN.G484.6 Capsicum annuum HOM05D012804 ORTHO05D003486 3.1e-08 64.3 152 30.3
Psat5g058120 Pisum sativum HOM05D006236 ORTHO05D003486 6.8e-08 63.2 149 32.9
TPR.G28699 Trifolium pratense HOM05D006236 ORTHO05D003486 6.8e-08 63.2 99 37.4
Actinidia15208 Actinidia chinensis HOM05D006236 ORTHO05D003486 8.9e-08 62.8 176 30.7
TPR.G28151 Trifolium pratense HOM05D006236 ORTHO05D003486 8.9e-08 62.8 190 30.5
SEGI_20168 Sequoiadendron giganteum HOM05D029892 ORTHO05D003486 1.5e-07 62.0 114 33.3
SEGI_21165 Sequoiadendron giganteum HOM05D029892 ORTHO05D003486 1.5e-07 62.0 99 38.4
AagrBONN_evm.TU.Sc2ySwM_228.1542 Anthoceros agrestis HOM05D002377 ORTHO05D003486 2.0e-07 61.6 103 36.9
Aqoxy6G00303 Aquilegia oxysepala HOM05D020429 ORTHO05D023582 2.0e-07 61.6 123 35.0
Ca_12735_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 2.0e-07 61.6 149 34.9
Ca_12741_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 2.0e-07 61.6 149 34.9
Cc00_g10350 Coffea canephora HOM05D006236 ORTHO05D003486 2.0e-07 61.6 216 28.2
PSO528G0025 Papaver somniferum HOM05D020877 ORTHO05D003486 3.4e-07 60.8 105 37.1
Ciclev10003901m.g Citrus clementina HOM05D006236 ORTHO05D003486 4.4e-07 60.5 139 36.7
Nitab4.5_0003471g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 9.9e-07 59.3 110 34.5
SGA_v2.0_scaffold52G18912 Striga asiatica HOM05D006236 ORTHO05D003486 9.9e-07 59.3 103 31.1
Hund17351 Selenicereus undatus HOM05D031599 ORTHO05D003486 1.3e-06 58.9 97 36.1
arahy.Tifrunner.gnm1.ann1.BNP26P Arachis hypogaea HOM05D006236 ORTHO05D003486 2.9e-06 57.8 243 25.9
FAN20G3074 Fragaria x ananassa HOM05D006236 ORTHO05D003486 2.9e-06 57.8 427 23.9
arahy.Tifrunner.gnm1.ann1.710PNE Arachis hypogaea HOM05D006236 ORTHO05D003486 3.7e-06 57.4 240 25.8
SalBow7G0481 Salvia bowleyana HOM05D006236 ORTHO05D003486 3.7e-06 57.4 140 27.1
SalBow7G2443 Salvia bowleyana HOM05D006236 ORTHO05D003486 3.7e-06 57.4 148 27.0
Lsat_1_v5_gn_6_110341 Lactuca sativa HOM05D006236 ORTHO05D003486 8.4e-06 56.2 121 35.5


User provided reference genes

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