Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s0703 Capsella rubella HOM05D006548 ORTHO05D008064 1.2e-83 313.2 160 100.0
AL3G18800 Arabidopsis lyrata HOM05D006548 ORTHO05D008064 5.0e-82 307.8 160 97.5
AT3G07480 Arabidopsis thaliana HOM05D006548 ORTHO05D008064 5.0e-82 307.8 160 97.5
CARHR082130 Cardamine hirsuta HOM05D006548 ORTHO05D008064 4.9e-77 291.2 164 90.9
Sp3g06390 Schrenkiella parvula HOM05D006548 ORTHO05D008064 4.9e-77 291.2 165 91.5
Aa31LG5G18040 Aethionema arabicum HOM05D006548 ORTHO05D008064 1.9e-73 279.3 163 87.1
BcaC05g29539 Brassica carinata HOM05D006548 ORTHO05D008064 3.3e-73 278.5 162 89.5
Thhalv10021677m.g Eutrema salsugineum HOM05D006548 ORTHO05D008064 5.6e-73 277.7 161 88.2
A05p40730 Brassica napus HOM05D006548 ORTHO05D008064 2.6e-70 268.9 160 88.1
C05p59840 Brassica napus HOM05D006548 ORTHO05D008064 2.6e-70 268.9 160 88.8
BolC5t34638H Brassica oleracea HOM05D006548 ORTHO05D008064 2.6e-70 268.9 160 88.1
BraA05t22804Z Brassica rapa HOM05D006548 ORTHO05D008064 2.6e-70 268.9 160 88.1
BcaB03g14699 Brassica carinata HOM05D006548 ORTHO05D008064 2.9e-69 265.4 160 83.8
THA.LOC104819003 Tarenaya hassleriana HOM05D006548 ORTHO05D008064 6.0e-67 257.7 167 79.6
PGR083G0463 Punica granatum HOM05D006548 ORTHO05D008064 1.4e-60 236.5 159 76.1
COL.COLO4_06931 Corchorus olitorius HOM05D006548 ORTHO05D008064 2.4e-60 235.7 159 74.2
Sabra14G0135300 Salix brachista HOM05D006548 ORTHO05D008064 4.1e-60 235.0 160 75.6
Potri.002G239000 Populus trichocarpa HOM05D006548 ORTHO05D008064 7.0e-60 234.2 164 74.4
Sabra02G0182000 Salix brachista HOM05D006548 ORTHO05D008064 7.0e-60 234.2 164 75.0
Gorai.007G160300 Gossypium raimondii HOM05D006548 ORTHO05D008064 9.2e-60 233.8 158 73.4
Gohir.A11G143200 Gossypium hirsutum HOM05D006548 ORTHO05D008064 1.6e-59 233.0 158 73.4
Rhsim13G0053600 Rhododendron simsii HOM05D006548 ORTHO05D008064 3.5e-59 231.9 162 72.8
TAR362G1118 Trochodendron aralioides HOM05D006548 ORTHO05D008064 3.5e-59 231.9 160 74.4
Gohir.D11G149500 Gossypium hirsutum HOM05D006548 ORTHO05D008064 6.0e-59 231.1 158 72.8
Lj2P1115T39 Lonicera japonica HOM05D006548 ORTHO05D008064 7.8e-59 230.7 159 74.8
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 1.7e-58 229.6 164 73.2
Ciclev10017030m.g Citrus clementina HOM05D006548 ORTHO05D008064 3.0e-58 228.8 161 73.3
Potri.014G177100 Populus trichocarpa HOM05D006548 ORTHO05D008064 3.0e-58 228.8 161 73.3
Manes.13G055300 Manihot esculenta HOM05D006548 ORTHO05D008064 3.9e-58 228.4 161 72.0
PSO017G5831 Papaver somniferum HOM05D006548 ORTHO05D008064 1.5e-57 226.5 157 75.8
Nitab4.5_0001348g0010 Nicotiana tabacum HOM05D006548 ORTHO05D008064 2.5e-57 225.7 160 72.5
Nitab4.5_0007144g0040 Nicotiana tabacum HOM05D006548 ORTHO05D008064 2.5e-57 225.7 160 72.5
Gohir.D07G202600 Gossypium hirsutum HOM05D006548 ORTHO05D008064 4.3e-57 224.9 158 70.9
CiPaw.13G058400 Carya illinoinensis HOM05D006548 ORTHO05D008064 5.6e-57 224.6 156 71.2
Peaxi162Scf00372g00041 Petunia axillaris HOM05D006548 ORTHO05D008064 7.3e-57 224.2 156 74.4
Gorai.001G228000 Gossypium raimondii HOM05D006548 ORTHO05D008064 1.2e-56 223.4 158 70.3
Manes.12G059600 Manihot esculenta HOM05D006548 ORTHO05D008064 1.2e-56 223.4 161 70.2
Nitab4.5_0011925g0010 Nicotiana tabacum HOM05D006548 ORTHO05D008064 1.2e-56 223.4 159 71.7
vmacro02826 Vaccinium macrocarpon HOM05D006548 ORTHO05D008064 1.2e-56 223.4 162 71.6
Atru.chr6.3534 Acer truncatum HOM05D006548 ORTHO05D008064 1.6e-56 223.0 162 72.2
Sed0004612 Sechium edule HOM05D006548 ORTHO05D008064 3.6e-56 221.9 150 72.0
FvH4_2g17650 Fragaria vesca HOM05D006548 ORTHO05D008064 4.7e-56 221.5 157 70.1
Hma1.2p1_0161F.1_g071510 Hydrangea macrophylla HOM05D006548 ORTHO05D008064 4.7e-56 221.5 159 69.2
Nn3g18599 Nelumbo nucifera HOM05D006548 ORTHO05D008064 6.2e-56 221.1 160 72.5
PSO675G8742 Papaver somniferum HOM05D006548 ORTHO05D008064 6.2e-56 221.1 157 74.5
FAN27G0042 Fragaria x ananassa HOM05D006548 ORTHO05D008064 1.1e-55 220.3 157 69.4
FAN27G0390 Fragaria x ananassa HOM05D006548 ORTHO05D008064 1.1e-55 220.3 157 69.4
FAN24G3284 Fragaria x ananassa HOM05D006548 ORTHO05D008064 1.4e-55 219.9 156 69.9
Ah.11g050830 Amaranthus hybridus HOM05D006548 ORTHO05D008064 2.3e-55 219.2 159 70.4
CSS0021481 Camellia sinensis var. sinensis HOM05D006548 ORTHO05D008064 3.1e-55 218.8 159 71.1
Duzib138G0849 Durio zibethinus HOM05D006548 ORTHO05D008064 4.0e-55 218.4 158 69.6
Prupe.8G188900 Prunus persica HOM05D006548 ORTHO05D008064 4.0e-55 218.4 162 69.8
CAN.G874.34 Capsicum annuum HOM05D006548 ORTHO05D008064 6.8e-55 217.6 159 72.3
Migut.N00670 Erythranthe guttata HOM05D006548 ORTHO05D008064 6.8e-55 217.6 161 67.1
Nitab4.5_0002311g0090 Nicotiana tabacum HOM05D006548 ORTHO05D008064 6.8e-55 217.6 158 73.4
ClCG09G007890 Citrullus lanatus HOM05D006548 ORTHO05D008064 1.2e-54 216.9 156 70.5
MBI08_g14954_MAGBIO Magnolia biondii HOM05D006659 ORTHO05D008064 1.5e-54 216.5 156 71.2
RcHm_v2.0_Chr6g0282621 Rosa chinensis HOM05D006548 ORTHO05D008064 2.0e-54 216.1 157 68.2
AUR62028648 Chenopodium quinoa HOM05D006548 ORTHO05D008064 2.6e-54 215.7 164 68.3
Cc01_g16030 Coffea canephora HOM05D006548 ORTHO05D008064 3.4e-54 215.3 159 69.2
Lalb_Chr03g0040981 Lupinus albus HOM05D006548 ORTHO05D008064 5.8e-54 214.5 155 71.6
Oeu051515.1 Olea europaea HOM05D006548 ORTHO05D008064 5.8e-54 214.5 161 68.3
MSTRG.17967 Avicennia marina HOM05D006548 ORTHO05D008064 7.5e-54 214.2 158 70.3
Sopen06g034400 Solanum pennellii HOM05D006548 ORTHO05D008064 9.9e-54 213.8 156 71.8
Cfa010631 Carpinus fangiana HOM05D006548 ORTHO05D008064 1.3e-53 213.4 160 70.0
DCAR_030798 Daucus carota HOM05D006548 ORTHO05D008064 1.7e-53 213.0 156 70.5
Nn4g25121 Nelumbo nucifera HOM05D006548 ORTHO05D008064 2.2e-53 212.6 160 71.2
Solyc06g007630.1 Solanum lycopersicum HOM05D006548 ORTHO05D008064 2.9e-53 212.2 121 82.6
Sopen06g002520 Solanum pennellii HOM05D006548 ORTHO05D008064 2.9e-53 212.2 121 82.6
PGSC0003DMG400027686 Solanum tuberosum HOM05D006548 ORTHO05D008064 3.7e-53 211.8 156 70.5
SGA_v2.0_scaffold95G28706 Striga asiatica HOM05D006548 ORTHO05D008064 3.7e-53 211.8 160 68.1
Haze_03573 Corylus avellana HOM05D006548 ORTHO05D008064 6.4e-53 211.1 162 68.5
PGSC0003DMG400020639 Solanum tuberosum HOM05D006548 ORTHO05D008064 6.4e-53 211.1 121 82.6
MD10G1150500 Malus domestica HOM05D006548 ORTHO05D008064 2.4e-52 209.1 159 71.1
QL09p047049 Quercus lobata HOM05D006548 ORTHO05D008064 2.4e-52 209.1 155 67.7
arahy.Tifrunner.gnm1.ann1.C7NXRU Arachis hypogaea HOM05D006548 ORTHO05D008064 4.1e-52 208.4 162 67.3
TWI18G0731 Tripterygium wilfordii HOM05D006548 ORTHO05D008064 5.4e-52 208.0 160 67.5
Duzib211G0675 Durio zibethinus HOM05D006548 ORTHO05D008064 1.2e-51 206.8 158 64.6
HanXRQChr08g0231851 Helianthus annuus HOM05D006548 ORTHO05D008064 2.1e-51 206.1 156 67.3
TWI75G1339 Tripterygium wilfordii HOM05D006548 ORTHO05D008064 2.1e-51 206.1 157 67.5
Aqoxy2G04054 Aquilegia oxysepala HOM05D006548 ORTHO05D008064 2.7e-51 205.7 156 66.7
TWI36G0698 Tripterygium wilfordii HOM05D006548 ORTHO05D008064 3.5e-51 205.3 160 66.9
arahy.Tifrunner.gnm1.ann1.I0E60T Arachis hypogaea HOM05D006548 ORTHO05D008064 4.6e-51 204.9 162 66.0
VMungo1383G2587 Vigna mungo HOM05D006548 ORTHO05D008064 6.0e-51 204.5 156 67.3
unitig_61.g26345 Utricularia gibba HOM05D006548 ORTHO05D008064 7.8e-51 204.1 161 65.8
Glyma.08G343100 Glycine max HOM05D006548 ORTHO05D008064 1.3e-50 203.4 156 65.4
Lalb_Chr01g0021941 Lupinus albus HOM05D006548 ORTHO05D008064 1.3e-50 203.4 156 67.3
Zm00001eb102720 Zea mays HOM05D006548 ORTHO05D008064 1.3e-50 203.4 160 63.1
HPP92_002744 Vanilla planifolia HOM05D006548 ORTHO05D008064 5.1e-50 201.4 156 64.7
Os09g0514600 Oryza sativa ssp. japonica HOM05D006548 ORTHO05D008064 6.6e-50 201.1 131 71.8
Phvul.008G137800 Phaseolus vulgaris HOM05D006548 ORTHO05D008064 8.6e-50 200.7 157 65.0
MELO3C015717.2 Cucumis melo HOM05D006548 ORTHO05D008064 1.1e-49 200.3 155 63.2
CSS0032607 Camellia sinensis var. sinensis HOM05D006548 ORTHO05D008064 1.9e-49 199.5 161 65.2
ECA247G0922 Erigeron canadensis HOM05D006548 ORTHO05D008064 1.2e-48 196.8 138 71.0
Lj1g0008534 Lotus japonicus HOM05D006548 ORTHO05D008064 2.1e-48 196.1 155 65.8
Thecc.01G209700 Theobroma cacao HOM05D006548 ORTHO05D008064 2.1e-48 196.1 142 69.7
Glyma.18G153900 Glycine max HOM05D006548 ORTHO05D008064 2.8e-48 195.7 156 63.5
CANSAT01G2941 Cannabis sativa HOM05D006548 ORTHO05D008064 3.6e-48 195.3 164 62.2
ATR0824G029 Amborella trichopoda HOM05D006548 ORTHO05D008064 4.7e-48 194.9 157 66.2
Ca_07442_v3 Cicer arietinum L. HOM05D006548 ORTHO05D008064 1.4e-47 193.4 150 65.3
GSVIVG01003797001 Vitis vinifera HOM05D006548 ORTHO05D008064 1.4e-47 193.4 137 67.2
Psat3g151760 Pisum sativum HOM05D006548 ORTHO05D008064 2.4e-47 192.6 149 64.4
TPR.G26806 Trifolium pratense HOM05D006548 ORTHO05D008064 2.4e-47 192.6 155 65.2
Medtr7g051230 Medicago truncatula HOM05D006548 ORTHO05D008064 1.5e-46 189.9 142 66.9
Lsat_1_v5_gn_9_16480 Lactuca sativa HOM05D006548 ORTHO05D008064 1.9e-44 183.0 164 62.8
Zm00001eb318350 Zea mays HOM05D006548 ORTHO05D008064 1.9e-44 183.0 119 72.3
Sc05g0001680 Simmondsia chinensis HOM05D006548 ORTHO05D008064 1.1e-41 173.7 140 65.0
BcaC05g29538 Brassica carinata HOM05D006548 ORTHO05D008064 2.1e-40 169.5 108 84.3
EL10Ac5g10597 Beta vulgaris HOM05D006548 ORTHO05D008064 3.6e-40 168.7 152 59.9
CsaV3_7G027180 Cucumis sativus L. HOM05D006548 ORTHO05D008064 4.7e-40 168.3 139 61.2
Gohir.A07G196200 Gossypium hirsutum HOM05D006548 ORTHO05D008064 3.2e-36 155.6 91 80.2
Pp3c2_31000 Physcomitrium patens HOM05D006548 ORTHO05D008064 3.9e-34 148.7 120 57.5
AagrBONN_evm.TU.Sc2ySwM_362.984 Anthoceros agrestis HOM05D006548 ORTHO05D008064 1.8e-31 139.8 155 45.2
C03p67920 Brassica napus HOM05D006548 ORTHO05D008064 3.8e-29 132.1 90 74.4
BcaC01g02172 Brassica carinata HOM05D006548 ORTHO05D008064 1.9e-28 129.8 90 73.3
Ciclev10013747m.g Citrus clementina HOM05D006548 ORTHO05D008064 4.2e-28 128.6 82 74.4
CDE12G0850 Ceratophyllum demersum HOM05D006548 ORTHO05D008064 5.4e-28 128.3 77 72.7
Mapoly0085s0036 Marchantia polymorpha HOM05D006548 ORTHO05D008064 5.1e-26 121.7 158 43.7
SEGI_16405 Sequoiadendron giganteum HOM05D002489 ORTHO05D002653 1.6e-19 100.1 74 64.9
CBR_g34314 Chara braunii HOM05D006548 ORTHO05D008064 4.8e-16 88.6 138 39.1
BolC3t19017H Brassica oleracea HOM05D006548 ORTHO05D008064 8.2e-16 87.8 49 83.7
BraA03t13759Z Brassica rapa HOM05D006548 ORTHO05D008064 1.8e-15 86.7 49 85.7
Actinidia30005 Actinidia chinensis HOM05D006548 ORTHO05D008064 3.1e-15 85.9 164 43.3
SMO119G0279 Selaginella moellendorffii HOM05D006548 ORTHO05D008064 1.9e-12 76.6 118 35.6
Mapoly0113s0043 Marchantia polymorpha HOM05D006548 ORTHO05D008064 7.4e-09 64.7 133 33.8


User provided reference genes

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