Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s0670 Capsella rubella HOM05D005553 ORTHO05D006866 0.0e+00 1216.8 605 100.0
Sp3g06120 Schrenkiella parvula HOM05D005553 ORTHO05D006866 0.0e+00 1116.3 605 90.7
AL3G18430 Arabidopsis lyrata HOM05D005553 ORTHO05D006866 0.0e+00 1107.0 605 91.1
CARHR081820 Cardamine hirsuta HOM05D005553 ORTHO05D006866 0.0e+00 1095.1 605 89.6
AT3G07180 Arabidopsis thaliana HOM05D005553 ORTHO05D006866 0.0e+00 1089.7 605 89.6
Thhalv10020331m.g Eutrema salsugineum HOM05D005553 ORTHO05D006866 0.0e+00 1078.2 605 87.8
AL384U10020 Arabidopsis lyrata HOM05D005553 ORTHO05D006866 5.0e-311 1070.5 581 91.2
BcaC05g29748 Brassica carinata HOM05D005553 ORTHO05D006866 2.4e-302 1041.6 604 85.8
A05p41030 Brassica napus HOM05D005553 ORTHO05D006866 5.4e-302 1040.4 607 86.0
BraA05t22829Z Brassica rapa HOM05D005553 ORTHO05D006866 1.7e-300 1035.4 607 85.5
BcaC05g29847 Brassica carinata HOM05D005553 ORTHO05D006866 3.4e-296 1021.1 606 84.8
C05p60190 Brassica napus HOM05D005553 ORTHO05D006866 3.4e-296 1021.1 606 84.7
BolC5t34669H Brassica oleracea HOM05D005553 ORTHO05D006866 2.2e-295 1018.5 606 84.5
Aa31LG5G17740 Aethionema arabicum HOM05D005553 ORTHO05D006866 7.0e-294 1013.4 609 82.4
THA.LOC104818968 Tarenaya hassleriana HOM05D005553 ORTHO05D006866 6.2e-282 973.8 606 78.5
Cpa.g.sc8.131 Carica papaya HOM05D005553 ORTHO05D006866 2.7e-237 825.5 584 70.0
Cfa002842 Carpinus fangiana HOM05D005553 ORTHO05D006866 2.7e-221 772.3 588 66.5
Manes.13G047900 Manihot esculenta HOM05D005553 ORTHO05D006866 4.6e-221 771.5 595 65.2
MD10G1161200 Malus domestica HOM05D005553 ORTHO05D006866 6.9e-217 757.7 590 64.7
COL.COLO4_15644 Corchorus olitorius HOM05D005553 ORTHO05D006866 1.5e-216 756.5 590 65.4
Thecc.01G222300 Theobroma cacao HOM05D005553 ORTHO05D006866 2.6e-216 755.7 583 66.4
TWI36G0825 Tripterygium wilfordii HOM05D005553 ORTHO05D006866 2.9e-215 752.3 587 65.6
Prupe.8G200200 Prunus persica HOM05D005553 ORTHO05D006866 5.0e-215 751.5 588 64.3
CANSAT01G0440 Cannabis sativa HOM05D005553 ORTHO05D006866 3.2e-214 748.8 581 63.2
Gorai.001G232700 Gossypium raimondii HOM05D005553 ORTHO05D006866 1.6e-213 746.5 590 65.6
Dinv12662 Davidia involucrata HOM05D005553 ORTHO05D006866 1.0e-212 743.8 603 63.0
Gohir.D07G206400 Gossypium hirsutum HOM05D005553 ORTHO05D006866 1.0e-212 743.8 589 65.4
Gohir.A07G200000 Gossypium hirsutum HOM05D005553 ORTHO05D006866 8.8e-212 740.7 589 65.7
Duzib138G1946 Durio zibethinus HOM05D005553 ORTHO05D006866 1.1e-211 740.3 589 64.9
Potri.002G245000 Populus trichocarpa HOM05D005553 ORTHO05D006866 5.7e-211 738.0 600 63.3
Sabra02G0186400 Salix brachista HOM05D005553 ORTHO05D006866 2.8e-210 735.7 599 62.6
CSS0002030 Camellia sinensis var. sinensis HOM05D005553 ORTHO05D006866 4.8e-210 734.9 595 62.5
PGR044G2083 Punica granatum HOM05D005553 ORTHO05D006866 6.3e-210 734.6 590 62.0
RcHm_v2.0_Chr6g0284311 Rosa chinensis HOM05D005553 ORTHO05D006866 1.4e-209 733.4 593 62.6
FAN27G0725 Fragaria x ananassa HOM05D005553 ORTHO05D006866 8.5e-207 724.2 591 62.1
CsaV3_6G002380 Cucumis sativus L. HOM05D005553 ORTHO05D006866 1.9e-206 723.0 599 60.8
vmacro14742 Vaccinium macrocarpon HOM05D005553 ORTHO05D006866 2.5e-206 722.6 618 60.4
Hma1.2p1_1018F.1_g248400 Hydrangea macrophylla HOM05D005553 ORTHO05D006866 3.2e-206 722.2 574 63.8
PSO063G5023 Papaver somniferum HOM05D005553 ORTHO05D006866 7.2e-206 721.1 609 59.3
Ciclev10019403m.g Citrus clementina HOM05D005553 ORTHO05D006866 4.7e-205 718.4 589 63.5
Eucgr.K02143 Eucalyptus grandis HOM05D005553 ORTHO05D006866 1.0e-204 717.2 612 59.8
Atru.chr6.1417 Acer truncatum HOM05D005553 ORTHO05D006866 1.4e-204 716.8 584 63.9
PSO782G3165 Papaver somniferum HOM05D005553 ORTHO05D006866 1.4e-204 716.8 609 58.9
GSVIVG01038357001 Vitis vinifera HOM05D005553 ORTHO05D006866 1.8e-204 716.5 581 63.5
FAN24G0205 Fragaria x ananassa HOM05D005553 ORTHO05D006866 8.8e-204 714.1 599 61.4
FvH4_2g18680 Fragaria vesca HOM05D005553 ORTHO05D006866 2.0e-203 713.0 599 61.3
QL09p052121 Quercus lobata HOM05D005553 ORTHO05D006866 3.3e-203 712.2 584 63.9
QL09p052989 Quercus lobata HOM05D005553 ORTHO05D006866 1.7e-202 709.9 584 64.2
MSTRG.17999 Avicennia marina HOM05D005553 ORTHO05D006866 1.1e-201 707.2 606 60.1
Nn1g07927 Nelumbo nucifera HOM05D005553 ORTHO05D006866 1.4e-201 706.8 591 60.9
Sc05g0002010 Simmondsia chinensis HOM05D005553 ORTHO05D006866 1.8e-201 706.4 614 61.1
Lalb_Chr03g0041571 Lupinus albus HOM05D005553 ORTHO05D006866 4.1e-201 705.3 596 60.7
Medtr7g056117 Medicago truncatula HOM05D005553 ORTHO05D006866 1.6e-200 703.4 595 60.3
Hund05570 Selenicereus undatus HOM05D005553 ORTHO05D006866 1.6e-200 703.4 606 60.1
Glyma.18G166600 Glycine max HOM05D005553 ORTHO05D006866 2.2e-199 699.5 610 60.2
arahy.Tifrunner.gnm1.ann1.K25WW2 Arachis hypogaea HOM05D005553 ORTHO05D006866 1.9e-198 696.4 594 59.6
Ah.08g214520 Amaranthus hybridus HOM05D005553 ORTHO05D006866 2.5e-198 696.0 591 60.2
arahy.Tifrunner.gnm1.ann1.T3HSIJ Arachis hypogaea HOM05D005553 ORTHO05D006866 1.2e-197 693.7 594 59.4
Cc01_g16820 Coffea canephora HOM05D005553 ORTHO05D006866 2.7e-197 692.6 579 61.1
Ca_24091_v3 Cicer arietinum L. HOM05D005553 ORTHO05D006866 6.1e-197 691.4 604 59.3
CSS0038931 Camellia sinensis var. sinensis HOM05D005553 ORTHO05D006866 1.4e-196 690.3 595 60.5
Oeu023098.1 Olea europaea HOM05D005553 ORTHO05D006866 4.0e-196 688.7 595 59.0
Glyma.08G349700 Glycine max HOM05D005553 ORTHO05D006866 6.7e-196 688.0 586 60.6
VMungo1383G1602 Vigna mungo HOM05D005553 ORTHO05D006866 1.7e-194 683.3 602 59.3
Phvul.008G130400 Phaseolus vulgaris HOM05D005553 ORTHO05D006866 2.2e-194 682.9 608 59.5
Lj1g0021333 Lotus japonicus HOM05D005553 ORTHO05D006866 8.2e-194 681.0 588 59.7
Aqoxy2G03234 Aquilegia oxysepala HOM05D005553 ORTHO05D006866 1.2e-192 677.2 597 56.8
CiPaw.03G146800 Carya illinoinensis HOM05D005553 ORTHO05D006866 1.2e-192 677.2 538 65.2
PGSC0003DMG400017493 Solanum tuberosum HOM05D005553 ORTHO05D006866 1.6e-192 676.8 587 58.4
Migut.N00626 Erythranthe guttata HOM05D005553 ORTHO05D006866 4.5e-192 675.2 606 57.9
Sopen09g022770 Solanum pennellii HOM05D005553 ORTHO05D006866 5.9e-192 674.9 588 58.5
PSO339G3667 Papaver somniferum HOM05D005553 ORTHO05D006866 2.2e-191 672.9 581 59.0
Sed0021986 Sechium edule HOM05D005553 ORTHO05D006866 3.8e-191 672.2 558 61.1
Solyc09g059600.4 Solanum lycopersicum HOM05D005553 ORTHO05D006866 3.8e-191 672.2 596 57.6
HanXRQChr07g0189551 Helianthus annuus HOM05D005553 ORTHO05D006866 1.5e-190 670.2 600 57.7
Nitab4.5_0000045g0420 Nicotiana tabacum HOM05D005553 ORTHO05D006866 4.2e-190 668.7 626 55.8
DCAR_023559 Daucus carota HOM05D005553 ORTHO05D006866 7.2e-190 667.9 553 61.5
CAN.G5.44 Capsicum annuum HOM05D005553 ORTHO05D006866 1.8e-188 663.3 601 55.9
Psat3g147960 Pisum sativum HOM05D005553 ORTHO05D006866 3.4e-187 659.1 602 57.5
Lj2A1127T50 Lonicera japonica HOM05D005553 ORTHO05D006866 4.4e-187 658.7 580 60.3
Lsat_1_v5_gn_9_13060 Lactuca sativa HOM05D005553 ORTHO05D006866 9.8e-187 657.5 592 57.1
EL10Ac7g17878 Beta vulgaris HOM05D005553 ORTHO05D006866 4.8e-186 655.2 589 57.4
Duzib211G0174 Durio zibethinus HOM05D005553 ORTHO05D006866 1.8e-185 653.3 515 66.0
Haze_24835 Corylus avellana HOM05D005553 ORTHO05D006866 1.7e-183 646.7 576 60.4
ClCG09G008830 Citrullus lanatus HOM05D005553 ORTHO05D006866 1.1e-182 644.0 596 57.2
FAN15G3597 Fragaria x ananassa HOM05D005553 ORTHO05D006866 1.5e-182 643.7 642 53.9
MBI06_g04543_MAGBIO Magnolia biondii HOM05D005553 ORTHO05D006866 5.2e-180 635.2 602 55.8
MELO3C020015.2 Cucumis melo HOM05D005553 ORTHO05D006866 6.8e-180 634.8 545 59.6
ECA247G0750 Erigeron canadensis HOM05D005553 ORTHO05D006866 2.2e-178 629.8 581 57.1
Nitab4.5_0000345g0010 Nicotiana tabacum HOM05D005553 ORTHO05D006866 2.3e-175 619.8 672 50.4
arahy.Tifrunner.gnm1.ann1.84RPTF Arachis hypogaea HOM05D005553 ORTHO05D006866 3.8e-175 619.0 601 54.2
Rhsim01G0254300 Rhododendron simsii HOM05D005553 ORTHO05D006866 8.6e-175 617.8 563 57.7
AUR62001118 Chenopodium quinoa HOM05D005553 ORTHO05D006866 1.8e-172 610.1 590 54.6
arahy.Tifrunner.gnm1.ann1.62F6YN Arachis hypogaea HOM05D005553 ORTHO05D006866 8.9e-172 607.8 587 54.9
CDE08G1475 Ceratophyllum demersum HOM05D005553 ORTHO05D006866 2.2e-170 603.2 599 52.9
Actinidia09473 Actinidia chinensis HOM05D005553 ORTHO05D006866 3.7e-170 602.4 588 54.6
Haze_24838 Corylus avellana HOM05D005553 ORTHO05D006866 8.3e-170 601.3 588 56.1
ATR0609G062 Amborella trichopoda HOM05D005553 ORTHO05D006866 2.6e-163 579.7 589 52.6
Zm00001eb365330 Zea mays HOM05D005553 ORTHO05D006866 2.4e-161 573.2 610 51.8
Peaxi162Scf00238g00217 Petunia axillaris HOM05D005553 ORTHO05D006866 7.0e-161 571.6 583 53.0
Os01g0907300 Oryza sativa ssp. japonica HOM05D005553 ORTHO05D006866 1.1e-158 564.3 609 50.6
Actinidia23714 Actinidia chinensis HOM05D005553 ORTHO05D006866 1.5e-158 563.9 585 53.3
AUR62016558 Chenopodium quinoa HOM05D005553 ORTHO05D006866 4.3e-158 562.4 594 51.0
TPR.G6452 Trifolium pratense HOM05D005553 ORTHO05D006866 4.6e-152 542.3 552 54.0
SHI14561 Sapria himalayana HOM05D005553 ORTHO05D006866 4.3e-150 535.8 546 53.5
arahy.Tifrunner.gnm1.ann1.B0WXN9 Arachis hypogaea HOM05D005553 ORTHO05D006866 1.6e-149 533.9 604 49.2
DCAR_000631 Daucus carota HOM05D005553 ORTHO05D006866 2.1e-149 533.5 553 52.8
Potri.002G244801 Populus trichocarpa HOM05D005553 ORTHO05D006866 2.8e-149 533.1 343 74.3
TAR365G1156 Trochodendron aralioides HOM05D005553 ORTHO05D006866 4.7e-149 532.3 450 60.9
SalBow3G3653 Salvia bowleyana HOM05D005553 ORTHO05D006866 3.2e-137 493.0 455 55.8
Dinv19184 Davidia involucrata HOM05D005553 ORTHO05D006866 1.5e-134 484.2 450 56.4
Pp3c13_19160 Physcomitrium patens HOM05D005553 ORTHO05D006866 1.0e-127 461.5 605 42.8
Mapoly0045s0104 Marchantia polymorpha HOM05D005553 ORTHO05D006866 4.3e-110 402.9 609 37.8
unitig_0.g372 Utricularia gibba HOM05D005553 ORTHO05D006866 1.4e-108 397.9 496 45.2
AagrBONN_evm.TU.Sc2ySwM_117.1632 Anthoceros agrestis HOM05D005553 ORTHO05D006866 5.9e-107 392.5 564 38.5
SMO353G0187 Selaginella moellendorffii HOM05D005553 ORTHO05D006866 3.9e-103 379.8 573 36.8
arahy.Tifrunner.gnm1.ann1.ET68I8 Arachis hypogaea HOM05D005553 ORTHO05D006866 6.5e-90 335.9 365 50.7
QL05p022419 Quercus lobata HOM05D005553 ORTHO05D006866 9.4e-89 332.0 257 63.8
arahy.Tifrunner.gnm1.ann1.SPK719 Arachis hypogaea HOM05D005553 ORTHO05D006866 2.0e-83 314.3 388 46.4
arahy.Tifrunner.gnm1.ann1.YI9T1V Arachis hypogaea HOM05D005553 ORTHO05D006866 4.8e-77 293.1 399 44.6
QL02p097148 Quercus lobata HOM05D005553 ORTHO05D006866 1.2e-75 288.5 223 65.5
HPP92_001419 Vanilla planifolia HOM05D005553 ORTHO05D008496 4.0e-71 273.5 231 59.7
CBR_g46590 Chara braunii HOM05D005553 ORTHO05D006866 3.7e-69 266.9 447 34.5
arahy.Tifrunner.gnm1.ann1.DF0SS3 Arachis hypogaea HOM05D005553 ORTHO05D006866 5.0e-58 229.9 314 44.9
HPP92_001410 Vanilla planifolia HOM05D005553 ORTHO05D006866 2.1e-56 224.6 207 57.0
arahy.Tifrunner.gnm1.ann1.3A36EA Arachis hypogaea HOM05D005553 ORTHO05D006866 4.4e-54 216.9 189 59.3
EL10Ac7g17877 Beta vulgaris HOM05D005553 ORTHO05D006866 5.6e-33 146.7 202 45.5
SEGI_34191 Sequoiadendron giganteum HOM05D005553 ORTHO05D006866 4.0e-31 140.6 147 46.3
A05p41020 Brassica napus HOM05D005553 ORTHO05D006866 5.2e-31 140.2 222 45.9
SEGI_35984 Sequoiadendron giganteum HOM05D005553 ORTHO05D006866 1.3e-29 135.6 267 35.2
unitig_0.g371 Utricularia gibba HOM05D005553 ORTHO05D006866 1.7e-21 108.6 76 73.7
Cfa026900 Carpinus fangiana HOM05D005553 ORTHO05D006866 5.4e-20 103.6 329 26.7
Cre01.g013400 Chlamydomonas reinhardtii HOM05D005553 ORTHO05D006866 6.0e-19 100.1 418 23.4
arahy.Tifrunner.gnm1.ann1.UUY44J Arachis hypogaea HOM05D005553 ORTHO05D006866 2.3e-18 98.2 236 31.8
TAR365G0595 Trochodendron aralioides HOM05D005553 ORTHO05D006866 1.4e-15 89.0 67 67.2
TPR.G39542 Trifolium pratense HOM05D005553 ORTHO05D006866 7.6e-14 83.2 50 70.0
MCO09G019 Micromonas commoda HOM05D005553 ORTHO05D006866 9.9e-14 82.8 166 31.9
VMungo1383G0327 Vigna mungo HOM05D005553 ORTHO05D006866 1.6e-08 65.5 56 55.4


User provided reference genes

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