Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s0574 Capsella rubella HOM05D004069 ORTHO05D004699 2.2e-60 235.3 109 100.0
AL3G17240 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 2.6e-58 228.4 109 96.3
AT3G06310 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 7.7e-58 226.9 109 95.4
CARHR080830 Cardamine hirsuta HOM05D004069 ORTHO05D004699 1.0e-57 226.5 109 95.4
Thhalv10021810m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 6.1e-55 217.2 107 92.5
Sp3g05220 Schrenkiella parvula HOM05D004069 ORTHO05D004699 8.8e-54 213.4 107 91.6
AL6G30150 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 2.0e-53 212.2 106 91.5
AT5G18800 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 2.0e-53 212.2 106 91.5
Carub.0006s1710 Capsella rubella HOM05D004069 ORTHO05D004699 2.0e-53 212.2 106 91.5
BcaB01g05275 Brassica carinata HOM05D004069 ORTHO05D004699 4.4e-53 211.1 106 90.6
BcaC03g13618 Brassica carinata HOM05D004069 ORTHO05D004699 4.4e-53 211.1 106 90.6
A03p09140 Brassica napus HOM05D004069 ORTHO05D004699 4.4e-53 211.1 106 90.6
A10p20810 Brassica napus HOM05D004069 ORTHO05D004699 4.4e-53 211.1 106 90.6
C03p10670 Brassica napus HOM05D004069 ORTHO05D004699 4.4e-53 211.1 106 90.6
BolC2t06916H Brassica oleracea HOM05D004069 ORTHO05D004699 4.4e-53 211.1 106 90.6
BolC3t13543H Brassica oleracea HOM05D004069 ORTHO05D004699 4.4e-53 211.1 106 90.6
BraA03t10237Z Brassica rapa HOM05D004069 ORTHO05D004699 4.4e-53 211.1 106 90.6
BraA10t44146Z Brassica rapa HOM05D004069 ORTHO05D004699 4.4e-53 211.1 106 90.6
CARHR194200 Cardamine hirsuta HOM05D004069 ORTHO05D004699 5.7e-53 210.7 106 90.6
Sp6g25590 Schrenkiella parvula HOM05D004069 ORTHO05D004699 5.7e-53 210.7 106 90.6
BcaB08g36643 Brassica carinata HOM05D004069 ORTHO05D004699 1.3e-52 209.5 106 89.6
Thhalv10015085m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 1.3e-52 209.5 106 89.6
C09p57690 Brassica napus HOM05D004069 ORTHO05D004699 1.7e-52 209.1 106 88.7
BraA02t05469Z Brassica rapa HOM05D004069 ORTHO05D004699 1.7e-52 209.1 104 91.3
BcaC04g18646 Brassica carinata HOM05D004069 ORTHO05D004699 4.8e-52 207.6 106 87.7
BolC9t58640H Brassica oleracea HOM05D004069 ORTHO05D004699 4.8e-52 207.6 106 87.7
Aa31LG11G10890 Aethionema arabicum HOM05D004069 ORTHO05D004699 6.3e-52 207.2 105 89.5
BcaB01g04889 Brassica carinata HOM05D004069 ORTHO05D004699 6.3e-52 207.2 103 90.3
Manes.03G189600 Manihot esculenta HOM05D004069 ORTHO05D004699 3.4e-50 201.4 105 85.7
Sabra08G0163600 Salix brachista HOM05D004069 ORTHO05D004699 3.4e-50 201.4 107 85.0
THA.LOC104818836 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 3.4e-50 201.4 105 85.7
A02p05100 Brassica napus HOM05D000415 ORTHO05D002707 4.5e-50 201.1 101 90.1
C02p10150 Brassica napus HOM05D000415 ORTHO05D002707 4.5e-50 201.1 101 90.1
Cpa.g.sc16.88 Carica papaya HOM05D004069 ORTHO05D004699 1.7e-49 199.1 105 84.8
Cfa015517 Carpinus fangiana HOM05D004069 ORTHO05D004699 5.0e-49 197.6 105 83.8
Manes.15G019000 Manihot esculenta HOM05D004069 ORTHO05D004699 1.1e-48 196.4 105 82.9
Potri.008G196600 Populus trichocarpa HOM05D004069 ORTHO05D004699 1.1e-48 196.4 107 82.2
Potri.010G026000 Populus trichocarpa HOM05D004069 ORTHO05D004699 2.5e-48 195.3 107 82.2
CiPaw.01G155300 Carya illinoinensis HOM05D004069 ORTHO05D004699 1.6e-47 192.6 105 81.9
Sabra10G0013600 Salix brachista HOM05D004069 ORTHO05D004699 1.6e-47 192.6 107 82.2
THA.LOC104827125 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 2.7e-47 191.8 103 84.5
CiPaw.02G087900 Carya illinoinensis HOM05D004069 ORTHO05D004699 3.6e-47 191.4 105 81.9
PGR004G0388 Punica granatum HOM05D004069 ORTHO05D004699 3.6e-47 191.4 103 84.5
TPR.G36608 Trifolium pratense HOM05D004069 ORTHO05D004699 6.1e-47 190.7 107 81.3
Psat4g149640 Pisum sativum HOM05D004069 ORTHO05D004699 1.0e-46 189.9 107 81.3
PGR031G1560 Punica granatum HOM05D004069 ORTHO05D004699 1.0e-46 189.9 101 85.1
GSVIVG01017834001 Vitis vinifera HOM05D004069 ORTHO05D004699 1.0e-46 189.9 105 81.0
Medtr8g035900 Medicago truncatula HOM05D004069 ORTHO05D004699 1.4e-46 189.5 106 81.1
Eucgr.H03663 Eucalyptus grandis HOM05D004069 ORTHO05D004699 1.8e-46 189.1 105 81.0
Atru.chr4.2722 Acer truncatum HOM05D004069 ORTHO05D004699 2.3e-46 188.7 105 80.0
Lj3g0025312 Lotus japonicus HOM05D004069 ORTHO05D004699 2.3e-46 188.7 105 81.9
Ciclev10006197m.g Citrus clementina HOM05D004069 ORTHO05D004699 3.0e-46 188.3 109 76.1
Glyma.01G145000 Glycine max HOM05D004069 ORTHO05D004699 3.0e-46 188.3 105 81.0
TWI73G0788 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 3.9e-46 188.0 106 77.4
VMungo0331G0279 Vigna mungo HOM05D004069 ORTHO05D004699 3.9e-46 188.0 105 80.0
TWI09G1514 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 5.2e-46 187.6 106 77.4
CSS0012120 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 1.1e-45 186.4 107 78.5
CANSAT54G0205 Cannabis sativa HOM05D004069 ORTHO05D004699 1.5e-45 186.0 104 80.8
Eucgr.B01248 Eucalyptus grandis HOM05D004069 ORTHO05D004699 1.5e-45 186.0 102 80.4
Glyma.03G021800 Glycine max HOM05D004069 ORTHO05D004699 1.5e-45 186.0 105 80.0
RcHm_v2.0_Chr4g0420511 Rosa chinensis HOM05D004069 ORTHO05D004699 1.5e-45 186.0 105 81.0
QL06p006731 Quercus lobata HOM05D004069 ORTHO05D004699 2.0e-45 185.7 105 77.1
Eucgr.B01240 Eucalyptus grandis HOM05D004069 ORTHO05D004699 7.4e-45 183.7 102 79.4
FAN07G2596 Fragaria x ananassa HOM05D004069 ORTHO05D004699 7.4e-45 183.7 105 80.0
FAN22G1255 Fragaria x ananassa HOM05D004069 ORTHO05D004699 7.4e-45 183.7 105 80.0
Cc03_g02560 Coffea canephora HOM05D004069 ORTHO05D004699 9.7e-45 183.3 101 80.2
CsaV3_1G037430 Cucumis sativus L. HOM05D004069 ORTHO05D004699 9.7e-45 183.3 105 77.1
Prupe.1G144300 Prunus persica HOM05D004069 ORTHO05D004699 9.7e-45 183.3 103 79.6
MD10G1048000 Malus domestica HOM05D004069 ORTHO05D004699 1.3e-44 183.0 103 80.6
Actinidia23443 Actinidia chinensis HOM05D004069 ORTHO05D004699 1.7e-44 182.6 103 78.6
FvH4_4g16930 Fragaria vesca HOM05D004069 ORTHO05D004699 1.7e-44 182.6 105 79.0
FAN12G1790 Fragaria x ananassa HOM05D004069 ORTHO05D004699 1.7e-44 182.6 105 79.0
FAN12G4073 Fragaria x ananassa HOM05D004069 ORTHO05D004699 1.7e-44 182.6 105 79.0
FAN17G0096 Fragaria x ananassa HOM05D004069 ORTHO05D004699 1.7e-44 182.6 105 80.0
VMungo0331G0995 Vigna mungo HOM05D004069 ORTHO05D004699 1.7e-44 182.6 105 77.1
arahy.Tifrunner.gnm1.ann1.EYX6XU Arachis hypogaea HOM05D004069 ORTHO05D004699 2.2e-44 182.2 105 77.1
PGR031G3162 Punica granatum HOM05D004069 ORTHO05D004699 2.2e-44 182.2 107 78.5
arahy.Tifrunner.gnm1.ann1.J8E67M Arachis hypogaea HOM05D004069 ORTHO05D004699 2.8e-44 181.8 105 77.1
MD05G1041600 Malus domestica HOM05D004069 ORTHO05D004699 2.8e-44 181.8 103 80.6
Sc11g0003950 Simmondsia chinensis HOM05D004069 ORTHO05D004699 2.8e-44 181.8 105 77.1
HPP92_001127 Vanilla planifolia HOM05D004069 ORTHO05D004699 2.8e-44 181.8 105 75.2
MD13G1175600 Malus domestica HOM05D004069 ORTHO05D004699 3.7e-44 181.4 103 80.6
vmacro08226 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 3.7e-44 181.4 107 76.6
EL10Ac9g21174 Beta vulgaris HOM05D004069 ORTHO05D004699 4.8e-44 181.0 109 77.1
Gohir.D10G164800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 6.3e-44 180.6 101 78.2
Ah.01g005950 Amaranthus hybridus HOM05D004069 ORTHO05D004699 8.2e-44 180.3 109 76.1
Gorai.011G184000 Gossypium raimondii HOM05D004069 ORTHO05D004699 8.2e-44 180.3 106 75.5
Nn3g21235 Nelumbo nucifera HOM05D004069 ORTHO05D004699 8.2e-44 180.3 106 74.5
Phvul.010G048500 Phaseolus vulgaris HOM05D004069 ORTHO05D004699 8.2e-44 180.3 105 76.2
Actinidia32378 Actinidia chinensis HOM05D004069 ORTHO05D004699 1.4e-43 179.5 106 74.5
Sed0000717 Sechium edule HOM05D004069 ORTHO05D004699 2.4e-43 178.7 105 76.2
Actinidia40204 Actinidia chinensis HOM05D004069 ORTHO05D004699 3.1e-43 178.3 101 79.2
Nn4g26079 Nelumbo nucifera HOM05D004069 ORTHO05D004699 3.1e-43 178.3 102 75.5
Sed0022789 Sechium edule HOM05D004069 ORTHO05D004699 4.1e-43 177.9 103 76.7
Gohir.A10G103600 Gossypium hirsutum HOM05D004069 ORTHO05D004699 5.3e-43 177.6 101 77.2
Hma1.2p1_0078F.1_g040910 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 7.0e-43 177.2 101 78.2
Nitab4.5_0001714g0140 Nicotiana tabacum HOM05D004069 ORTHO05D004699 9.1e-43 176.8 103 74.8
Nitab4.5_0009882g0010 Nicotiana tabacum HOM05D004069 ORTHO05D004699 9.1e-43 176.8 103 74.8
Hund07638 Selenicereus undatus HOM05D004069 ORTHO05D004699 9.1e-43 176.8 105 75.2
Peaxi162Scf00620g00918 Petunia axillaris HOM05D004069 ORTHO05D004699 2.0e-42 175.6 103 74.8
Hma1.2p1_1671F.1_g296710 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 2.6e-42 175.3 101 77.2
Actinidia00062 Actinidia chinensis HOM05D004069 ORTHO05D004699 3.5e-42 174.9 102 74.5
MD16G1177400 Malus domestica HOM05D004069 ORTHO05D004699 3.5e-42 174.9 103 77.7
Thecc.04G274500 Theobroma cacao HOM05D004069 ORTHO05D004699 3.5e-42 174.9 105 73.3
Solyc08g080240.3 Solanum lycopersicum HOM05D004069 ORTHO05D004699 4.5e-42 174.5 103 73.8
Sopen08g028590 Solanum pennellii HOM05D004069 ORTHO05D004699 4.5e-42 174.5 103 73.8
PGSC0003DMG400022739 Solanum tuberosum HOM05D004069 ORTHO05D004699 4.5e-42 174.5 104 73.1
Zm00001eb396890 Zea mays HOM05D004069 ORTHO05D004699 4.5e-42 174.5 105 70.5
CAN.G981.42 Capsicum annuum HOM05D004069 ORTHO05D004699 5.9e-42 174.1 102 74.5
Lalb_Chr13g0291661 Lupinus albus HOM05D004069 ORTHO05D004699 5.9e-42 174.1 105 72.4
Os03g0295500 Oryza sativa ssp. japonica HOM05D004069 ORTHO05D004699 5.9e-42 174.1 105 70.5
Gohir.A09G232800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 7.7e-42 173.7 103 73.8
AUR62022250 Chenopodium quinoa HOM05D004069 ORTHO05D004699 1.0e-41 173.3 109 73.4
Gohir.D09G233900 Gossypium hirsutum HOM05D004069 ORTHO05D004699 1.0e-41 173.3 103 73.8
HanXRQChr13g0410171 Helianthus annuus HOM05D004069 ORTHO05D004699 1.0e-41 173.3 105 73.3
Hma1.2p1_0643F.1_g194630 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 1.0e-41 173.3 102 76.5
Lalb_Chr07g0189611 Lupinus albus HOM05D004069 ORTHO05D004699 1.0e-41 173.3 106 69.8
Hund24899 Selenicereus undatus HOM05D004069 ORTHO05D004699 1.3e-41 172.9 97 77.3
Duzib151G0641 Durio zibethinus HOM05D004069 ORTHO05D004699 1.7e-41 172.6 103 72.8
Gorai.006G256800 Gossypium raimondii HOM05D004069 ORTHO05D004699 1.7e-41 172.6 103 72.8
ATR0208G034 Amborella trichopoda HOM05D004069 ORTHO05D004699 2.9e-41 171.8 103 73.8
Aqoxy2G03156 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 2.9e-41 171.8 103 73.8
ECA240G0933 Erigeron canadensis HOM05D004069 ORTHO05D004699 2.9e-41 171.8 105 71.4
TAR362G0867 Trochodendron aralioides HOM05D004069 ORTHO05D004699 6.5e-41 170.6 103 72.8
DCAR_002434 Daucus carota HOM05D004069 ORTHO05D004699 8.5e-41 170.2 103 72.8
vmacro15276 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 8.5e-41 170.2 108 73.1
Duzib052G0156 Durio zibethinus HOM05D004069 ORTHO05D004699 1.1e-40 169.9 103 70.9
Zm00001eb013640 Zea mays HOM05D004069 ORTHO05D004699 1.1e-40 169.9 111 67.6
HanXRQChr03g0079731 Helianthus annuus HOM05D004069 ORTHO05D004699 1.5e-40 169.5 104 73.1
Lsat_1_v5_gn_5_49720 Lactuca sativa HOM05D004069 ORTHO05D004699 2.5e-40 168.7 103 71.8
Duzib212G0467 Durio zibethinus HOM05D004069 ORTHO05D004699 3.2e-40 168.3 103 69.9
Aqoxy5G00598 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 9.4e-40 166.8 106 70.8
Migut.F02022 Erythranthe guttata HOM05D004069 ORTHO05D004699 9.4e-40 166.8 103 70.9
PSO832G3814 Papaver somniferum HOM05D004069 ORTHO05D004699 9.4e-40 166.8 100 77.0
PSO210G4490 Papaver somniferum HOM05D004069 ORTHO05D004699 1.6e-39 166.0 100 76.0
CDE09G1375 Ceratophyllum demersum HOM05D004069 ORTHO05D004699 2.7e-39 165.2 101 71.3
MSTRG.9205 Avicennia marina HOM05D004069 ORTHO05D004699 4.7e-39 164.5 97 73.2
SEGI_25177 Sequoiadendron giganteum HOM05D004069 ORTHO05D004699 8.0e-39 163.7 96 71.9
Sc19g0004820 Simmondsia chinensis HOM05D004069 ORTHO05D004699 8.0e-39 163.7 105 68.6
TAR633G1540 Trochodendron aralioides HOM05D004069 ORTHO05D004699 1.4e-38 162.9 86 81.4
Rhsim02G0014600 Rhododendron simsii HOM05D004069 ORTHO05D004699 2.3e-38 162.2 107 68.2
unitig_46.g18583 Utricularia gibba HOM05D004069 ORTHO05D004699 4.0e-38 161.4 101 69.3
Oeu007709.1 Olea europaea HOM05D004069 ORTHO05D004699 5.2e-38 161.0 102 68.6
unitig_37.g12295 Utricularia gibba HOM05D004069 ORTHO05D004699 8.8e-38 160.2 97 69.1
Rhsim04G0214300 Rhododendron simsii HOM05D004069 ORTHO05D004699 4.4e-37 157.9 172 49.4
HanXRQChr03g0080011 Helianthus annuus HOM05D004069 ORTHO05D004699 2.2e-36 155.6 88 75.0
Haze_01035 Corylus avellana HOM05D004069 ORTHO05D004699 1.4e-35 152.9 85 81.2
THA.LOC104802732 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 7.7e-34 147.1 79 83.5
Pp3c10_17050 Physcomitrium patens HOM05D004069 ORTHO05D004699 1.0e-33 146.7 105 61.9
Pp3c3_33480 Physcomitrium patens HOM05D004069 ORTHO05D004699 3.2e-32 141.7 94 63.8
Mapoly0119s0025 Marchantia polymorpha HOM05D004069 ORTHO05D004699 4.2e-32 141.4 95 62.1
Pp3c4_6220 Physcomitrium patens HOM05D004069 ORTHO05D004699 7.2e-32 140.6 97 60.8
CBR_g31386 Chara braunii HOM05D004069 ORTHO05D004699 2.7e-31 138.7 103 59.2
Lsat_1_v5_gn_5_51221 Lactuca sativa HOM05D004069 ORTHO05D004699 8.0e-31 137.1 77 74.0
Dinv44442 Davidia involucrata HOM05D004069 ORTHO05D004699 5.7e-29 131.0 100 62.0
Dinv38340 Davidia involucrata HOM05D004069 ORTHO05D004699 1.3e-28 129.8 103 58.3
CDE02G1037 Ceratophyllum demersum HOM05D003181 ORTHO05D003689 4.1e-27 124.8 78 70.5
SMO146G0136 Selaginella moellendorffii HOM05D004069 ORTHO05D004699 1.0e-25 120.2 99 48.5
CSS0016731 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 4.7e-23 111.3 69 73.9
Ca_23836_v3 Cicer arietinum L. HOM05D004069 ORTHO05D004699 8.9e-22 107.1 61 80.3
MCO10G196 Micromonas commoda HOM05D004069 ORTHO05D004699 2.6e-21 105.5 92 48.9
PGSC0003DMG400012496 Solanum tuberosum HOM05D004069 ORTHO05D004699 2.6e-21 105.5 71 67.6
CANSAT54G1967 Cannabis sativa HOM05D004069 ORTHO05D004699 1.2e-18 96.7 59 74.6
ClCG03G006350 Citrullus lanatus HOM05D004069 ORTHO05D004699 2.7e-18 95.5 65 64.6
MELO3C035505.2 Cucumis melo HOM05D004069 ORTHO05D004699 5.9e-18 94.4 61 67.2
PRCOL_00002240 Prasinoderma coloniale HOM05D004069 ORTHO05D004699 3.8e-17 91.7 90 43.3
Oeu055049.1 Olea europaea HOM05D005940 ORTHO05D007027 5.0e-17 91.3 67 62.7
AUR62031965 Chenopodium quinoa HOM05D004069 ORTHO05D004699 1.1e-16 90.1 65 67.7
Ah.01g017180 Amaranthus hybridus HOM05D004069 ORTHO05D004699 7.3e-16 87.4 55 67.3
HanXRQChr05g0152631 Helianthus annuus HOM05D001685 ORTHO05D007488 9.5e-16 87.0 57 68.4
Solyc08g007805.1 Solanum lycopersicum HOM05D004069 ORTHO05D004699 1.6e-15 86.3 54 68.5
Ah.01g017190 Amaranthus hybridus HOM05D004069 ORTHO05D004699 2.1e-15 85.9 59 69.5
MBI18_g15803_MAGBIO Magnolia biondii HOM05D004069 ORTHO05D004699 2.1e-15 85.9 41 85.4
SGA_v2.0_scaffold122G33247 Striga asiatica HOM05D002362 ORTHO05D002465 1.8e-14 82.8 52 67.3
Lsat_1_v5_gn_5_162901 Lactuca sativa HOM05D004069 ORTHO05D004699 2.3e-14 82.4 61 60.7
VMungo0251G3681 Vigna mungo HOM05D039118 ORTHO05D004699 4.0e-14 81.6 44 79.5
VMungo0720G1128 Vigna mungo HOM05D004069 ORTHO05D004699 5.8e-13 77.8 61 59.0
Cre07.g333900 Chlamydomonas reinhardtii HOM05D004069 ORTHO05D004699 1.0e-09 67.0 94 33.0
Cfa025682 Carpinus fangiana HOM05D004069 ORTHO05D122540 6.2e-07 57.8 92 34.8


User provided reference genes

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