Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s0573 Capsella rubella HOM05D004201 ORTHO05D014863 3.5e-169 598.2 300 100.0
AL3G17220 Arabidopsis lyrata HOM05D004201 ORTHO05D014863 3.3e-103 379.0 301 69.8
CARHR080810 Cardamine hirsuta HOM05D004201 ORTHO05D014863 5.0e-99 365.2 266 72.9
BraA01t04445Z Brassica rapa HOM05D014826 ORTHO05D014863 6.7e-88 328.2 298 62.1
BNapus_Darmor_BZH_scaffold_118p00220 Brassica napus HOM05D014826 ORTHO05D014863 1.6e-81 307.0 322 56.8
BcaC05g30039 Brassica carinata HOM05D014826 ORTHO05D014863 6.1e-73 278.5 298 56.0
A05p41720 Brassica napus HOM05D014826 ORTHO05D014863 3.7e-70 269.2 290 54.5
BraA05t22891Z Brassica rapa HOM05D014826 ORTHO05D014863 4.8e-70 268.9 290 54.5
AL3G17200 Arabidopsis lyrata HOM05D004201 ORTHO05D014863 4.1e-61 239.2 298 48.7
BcaC05g29805 Brassica carinata HOM05D014826 ORTHO05D014863 2.1e-57 226.9 243 53.1
C05p60930 Brassica napus HOM05D014826 ORTHO05D014863 9.5e-42 174.9 173 54.3
BolC5t34749H Brassica oleracea HOM05D014826 ORTHO05D014863 9.5e-42 174.9 173 54.3
AL1G13240 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 1.4e-29 134.4 220 39.1
AL1G13250 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 3.2e-29 133.3 212 40.1
A10p02260 Brassica napus HOM05D004201 ORTHO05D012052 4.1e-29 132.9 181 41.4
BraA10t42492Z Brassica rapa HOM05D004201 ORTHO05D012052 4.1e-29 132.9 181 41.4
BraA10t42489Z Brassica rapa HOM05D004201 ORTHO05D012052 1.2e-28 131.3 181 42.0
C05p02080 Brassica napus HOM05D004201 ORTHO05D012052 2.1e-28 130.6 176 41.5
BolC5t28985H Brassica oleracea HOM05D004201 ORTHO05D012052 2.1e-28 130.6 176 41.5
A10p02210 Brassica napus HOM05D004201 ORTHO05D012052 2.7e-28 130.2 181 41.4
Thhalv10008370m.g Eutrema salsugineum HOM05D004201 ORTHO05D012052 6.0e-28 129.0 227 40.5
AL1G13230 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 7.8e-28 128.6 165 42.4
AT1G03710 Arabidopsis thaliana HOM05D004201 ORTHO05D012052 1.3e-27 127.9 206 40.8
AL1G13200 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 6.6e-27 125.6 188 41.0
AL1G13220 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 6.6e-27 125.6 167 42.5
THA.LOC104809407 Tarenaya hassleriana HOM05D004201 ORTHO05D012052 7.3e-26 122.1 225 40.9
THA.LOC104809406 Tarenaya hassleriana HOM05D004201 ORTHO05D012052 4.7e-25 119.4 225 40.0
BcaB02g06909 Brassica carinata HOM05D004201 ORTHO05D012052 1.8e-24 117.5 355 30.1
BcaC05g24515 Brassica carinata HOM05D004201 ORTHO05D012052 1.7e-22 110.9 161 39.8
THA.LOC104801147 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 4.2e-21 106.3 231 35.9
Carub.0001s0281 Capsella rubella HOM05D004201 ORTHO05D012052 1.6e-20 104.4 173 38.2
THA.LOC104801148 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 1.7e-19 100.9 238 34.5
AT4G03565 Arabidopsis thaliana HOM05D012310 ORTHO05D012594 2.5e-18 97.1 183 37.2
BcaB08g36118 Brassica carinata HOM05D004201 ORTHO05D009648 4.0e-16 89.7 226 36.3
CARHR080820 Cardamine hirsuta HOM05D014826 ORTHO05D014863 4.0e-16 89.7 75 66.7
Carub.0006s3348 Capsella rubella HOM05D004201 ORTHO05D009648 5.3e-16 89.4 202 37.6
THA.LOC104801562 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 5.3e-16 89.4 226 32.7
BcaC01g06645 Brassica carinata HOM05D004201 ORTHO05D009648 6.9e-16 89.0 187 38.0
Carub.0006s3349 Capsella rubella HOM05D004201 ORTHO05D009648 6.9e-16 89.0 180 37.2
AL3G16360 Arabidopsis lyrata HOM05D004201 ORTHO05D031360 1.2e-15 88.2 203 36.0
AL6G49270 Arabidopsis lyrata HOM05D012310 ORTHO05D012594 1.5e-15 87.8 174 36.2
Thhalv10029282m.g Eutrema salsugineum HOM05D012310 ORTHO05D012594 1.5e-15 87.8 188 35.1
BcaB01g04954 Brassica carinata HOM05D004201 ORTHO05D009648 2.0e-15 87.4 217 35.9
Thhalv10021511m.g Eutrema salsugineum HOM05D004201 ORTHO05D011677 5.8e-15 85.9 192 35.4
Carub.0006s3347 Capsella rubella HOM05D004201 ORTHO05D009648 9.9e-15 85.1 201 35.3
AL304U10030 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 1.3e-14 84.7 188 35.6
A03p20510 Brassica napus HOM05D004201 ORTHO05D009648 2.2e-14 84.0 225 34.7
AT5G17090 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 2.9e-14 83.6 166 36.1
Carub.0006s1532 Capsella rubella HOM05D004201 ORTHO05D009648 2.9e-14 83.6 208 35.6
Carub.0006s1528 Capsella rubella HOM05D004201 ORTHO05D009648 3.8e-14 83.2 233 32.2
AL6G28110 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 4.9e-14 82.8 226 30.5
A03p08170 Brassica napus HOM05D004201 ORTHO05D009648 6.4e-14 82.4 184 34.8
BcaB01g05229 Brassica carinata HOM05D004201 ORTHO05D009648 8.4e-14 82.0 163 36.2
AL6G49220 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 1.1e-13 81.6 221 35.3
BcaB01g04958 Brassica carinata HOM05D004201 ORTHO05D009648 1.4e-13 81.3 190 35.3
THA.LOC104801127 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 1.4e-13 81.3 237 32.9
THA.LOC104801128 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 3.2e-13 80.1 229 32.3
AT5G17110 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 4.2e-13 79.7 208 34.1
BcaC05g30167 Brassica carinata HOM05D004201 ORTHO05D011677 4.2e-13 79.7 233 32.6
Thhalv10015849m.g Eutrema salsugineum HOM05D004201 ORTHO05D009648 4.2e-13 79.7 213 35.7
AL3G16370 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 5.4e-13 79.3 197 35.0
BcaC01g06667 Brassica carinata HOM05D012310 ORTHO05D012594 5.4e-13 79.3 174 34.5
C03p36650 Brassica napus HOM05D012310 ORTHO05D012594 5.4e-13 79.3 174 34.5
BolC3t15979H Brassica oleracea HOM05D012310 ORTHO05D012594 5.4e-13 79.3 174 34.5
BraA03t12217Z Brassica rapa HOM05D012310 ORTHO05D012594 5.4e-13 79.3 174 34.5
THA.LOC104801126 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 5.4e-13 79.3 230 33.5
Carub.0006s1531 Capsella rubella HOM05D004201 ORTHO05D009648 1.2e-12 78.2 177 36.7
C03p09410 Brassica napus HOM05D004201 ORTHO05D009648 1.6e-12 77.8 164 35.4
C09p02940 Brassica napus HOM05D004201 ORTHO05D009648 2.1e-12 77.4 204 35.8
BraA09t35929Z Brassica rapa HOM05D004201 ORTHO05D009648 2.7e-12 77.0 174 36.8
BcaB01g04953 Brassica carinata HOM05D004201 ORTHO05D009648 4.6e-12 76.3 192 34.4
BcaB01g05230 Brassica carinata HOM05D004201 ORTHO05D009648 6.0e-12 75.9 164 34.8
BraA03t10139Z Brassica rapa HOM05D004201 ORTHO05D009648 6.0e-12 75.9 210 33.8
AL6G49300 Arabidopsis lyrata HOM05D012310 ORTHO05D012594 7.9e-12 75.5 194 34.0
BcaB01g05228 Brassica carinata HOM05D004201 ORTHO05D009648 7.9e-12 75.5 196 32.1
BcaC05g30121 Brassica carinata HOM05D004201 ORTHO05D011677 1.0e-11 75.1 213 32.9
C05p61800 Brassica napus HOM05D004201 ORTHO05D011677 1.0e-11 75.1 213 33.3
BraA03t10141Z Brassica rapa HOM05D004201 ORTHO05D009648 1.0e-11 75.1 193 34.7
A03p08140 Brassica napus HOM05D004201 ORTHO05D009648 1.3e-11 74.7 164 34.8
A03p30350 Brassica napus HOM05D012310 ORTHO05D012594 1.3e-11 74.7 174 33.9
Carub.0006s1530 Capsella rubella HOM05D004201 ORTHO05D009648 1.3e-11 74.7 175 36.0
AT5G17150 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 1.8e-11 74.3 193 34.2
C03p09500 Brassica napus HOM05D004201 ORTHO05D009648 1.8e-11 74.3 165 37.6
BolC3t13435H Brassica oleracea HOM05D004201 ORTHO05D009648 1.8e-11 74.3 211 33.2
AT5G17100 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 3.0e-11 73.6 171 32.7
A08p33280 Brassica napus HOM05D004201 ORTHO05D009648 3.0e-11 73.6 169 35.5
BraA08t35247Z Brassica rapa HOM05D004201 ORTHO05D009648 3.0e-11 73.6 201 35.8
AL6G28150 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 3.9e-11 73.2 215 31.2
A03p08190 Brassica napus HOM05D004201 ORTHO05D009648 3.9e-11 73.2 230 31.7
AT5G17120 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 1.1e-10 71.6 195 34.9
BcaB03g13238 Brassica carinata HOM05D004201 ORTHO05D009648 1.1e-10 71.6 168 33.9
BcaC06g31919 Brassica carinata HOM05D004201 ORTHO05D009648 1.1e-10 71.6 168 35.7
CARHR080560 Cardamine hirsuta HOM05D004201 ORTHO05D011677 1.1e-10 71.6 181 33.1
BcaB01g05220 Brassica carinata HOM05D004201 ORTHO05D009648 1.5e-10 71.2 192 32.8
BcaB01g05223 Brassica carinata HOM05D004201 ORTHO05D009648 1.5e-10 71.2 192 32.8
BcaC07g38685 Brassica carinata HOM05D004201 ORTHO05D009648 1.9e-10 70.9 188 35.1
BolC8t49120H Brassica oleracea HOM05D004201 ORTHO05D009648 1.9e-10 70.9 188 35.1
Carub.0006s3346 Capsella rubella HOM05D004201 ORTHO05D009648 2.5e-10 70.5 203 33.0
AL6G49230 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 3.3e-10 70.1 207 35.3
BcaB08g36116 Brassica carinata HOM05D004201 ORTHO05D009648 4.3e-10 69.7 182 35.7
CARHR252000 Cardamine hirsuta HOM05D012310 ORTHO05D012594 4.3e-10 69.7 179 30.7
BcaB01g04951 Brassica carinata HOM05D004201 ORTHO05D009648 5.6e-10 69.3 226 31.4
BcaB01g05218 Brassica carinata HOM05D004201 ORTHO05D009648 5.6e-10 69.3 209 31.6
A03p08180 Brassica napus HOM05D004201 ORTHO05D009648 7.4e-10 68.9 216 29.6
C03p09490 Brassica napus HOM05D004201 ORTHO05D009648 7.4e-10 68.9 185 33.0
C09p60060 Brassica napus HOM05D004201 ORTHO05D009648 7.4e-10 68.9 199 34.2
BolC9t58841H Brassica oleracea HOM05D004201 ORTHO05D009648 7.4e-10 68.9 199 34.2
Carub.0006s1529 Capsella rubella HOM05D004201 ORTHO05D009648 7.4e-10 68.9 224 32.6
A03p08160 Brassica napus HOM05D004201 ORTHO05D009648 9.6e-10 68.6 162 33.3
C03p09420 Brassica napus HOM05D004201 ORTHO05D009648 9.6e-10 68.6 162 33.3
BcaB01g04956 Brassica carinata HOM05D004201 ORTHO05D009648 1.3e-09 68.2 188 33.0
BcaB01g05219 Brassica carinata HOM05D004201 ORTHO05D009648 1.3e-09 68.2 185 32.4
C08p14870 Brassica napus HOM05D004201 ORTHO05D009648 1.3e-09 68.2 188 34.6
CARHR079840 Cardamine hirsuta HOM05D004201 ORTHO05D011677 1.3e-09 68.2 232 33.2
BcaB01g05224 Brassica carinata HOM05D004201 ORTHO05D009648 1.6e-09 67.8 218 33.0
CARHR196090 Cardamine hirsuta HOM05D004201 ORTHO05D009648 1.6e-09 67.8 166 33.7
BcaB01g04955 Brassica carinata HOM05D004201 ORTHO05D009648 2.1e-09 67.4 164 34.1
Aa31LG11G12620 Aethionema arabicum HOM05D004201 ORTHO05D009648 4.8e-09 66.2 252 29.4
BcaB01g05222 Brassica carinata HOM05D004201 ORTHO05D009648 1.1e-08 65.1 225 29.8
BcaB01g05226 Brassica carinata HOM05D004201 ORTHO05D009648 1.1e-08 65.1 225 29.8
Carub.0006s1527 Capsella rubella HOM05D004201 ORTHO05D009648 1.1e-08 65.1 227 30.8
AL6G28160 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 1.8e-08 64.3 311 28.6
A03p08200 Brassica napus HOM05D004201 ORTHO05D009648 3.1e-08 63.5 192 32.3
Aa31LG11G12510 Aethionema arabicum HOM05D004201 ORTHO05D009648 6.9e-08 62.4 168 31.5
BolC3t13445H Brassica oleracea HOM05D004201 ORTHO05D009648 9.0e-08 62.0 166 32.5
BolC5t34836H Brassica oleracea HOM05D004201 ORTHO05D011677 1.2e-07 61.6 227 31.3
Aa31LG11G12490 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.5e-07 61.2 220 30.0
BcaB01g05221 Brassica carinata HOM05D004201 ORTHO05D009648 1.5e-07 61.2 107 38.3
THA.LOC104809658 Tarenaya hassleriana HOM05D004201 ORTHO05D012052 1.5e-07 61.2 115 36.5
A10p11030 Brassica napus HOM05D004201 ORTHO05D012052 2.0e-07 60.8 114 33.3
BraA10t43195Z Brassica rapa HOM05D004201 ORTHO05D012052 2.0e-07 60.8 114 33.3
AT4G03570 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 2.6e-07 60.5 132 35.6
CARHR079790 Cardamine hirsuta HOM05D004201 ORTHO05D011677 2.6e-07 60.5 93 41.9
Aa31LG11G12560 Aethionema arabicum HOM05D004201 ORTHO05D009648 3.4e-07 60.1 232 30.2
Aa31LG11G12830 Aethionema arabicum HOM05D004201 ORTHO05D009648 3.4e-07 60.1 188 30.3
BraA09t35931Z Brassica rapa HOM05D004201 ORTHO05D009648 4.5e-07 59.7 80 48.8
Aa31LG11G12790 Aethionema arabicum HOM05D004201 ORTHO05D009648 5.8e-07 59.3 225 29.8
BcaB01g05225 Brassica carinata HOM05D004201 ORTHO05D009648 5.8e-07 59.3 224 30.4
Aa31LG11G12500 Aethionema arabicum HOM05D004201 ORTHO05D009648 7.6e-07 58.9 209 30.6
Aa31LG11G12800 Aethionema arabicum HOM05D004201 ORTHO05D009648 2.2e-06 57.4 175 29.7
AL5G37830 Arabidopsis lyrata HOM05D014826 ORTHO05D012052 2.2e-06 57.4 47 61.7
CARHR079820 Cardamine hirsuta HOM05D004201 ORTHO05D011677 2.2e-06 57.4 103 39.8
Aa31LG11G12820 Aethionema arabicum HOM05D004201 ORTHO05D009648 4.9e-06 56.2 271 27.3
Aa31LG11G12540 Aethionema arabicum HOM05D004201 ORTHO05D009648 8.4e-06 55.5 189 31.7
AL3G16010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 8.4e-06 55.5 229 31.4


User provided reference genes

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