Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s0539 Capsella rubella HOM05D005221 ORTHO05D006355 7.2e-112 407.5 247 100.0
AL3G16790 Arabidopsis lyrata HOM05D005221 ORTHO05D006355 3.5e-98 362.1 250 90.8
AT3G05980 Arabidopsis thaliana HOM05D005221 ORTHO05D006355 3.7e-92 342.0 250 86.8
BcaC05g30072 Brassica carinata HOM05D005221 ORTHO05D006355 2.2e-84 316.2 247 81.0
BraA05t22925Z Brassica rapa HOM05D005221 ORTHO05D006355 4.9e-84 315.1 247 82.2
C05p61280 Brassica napus HOM05D005221 ORTHO05D006355 1.2e-82 310.5 247 81.4
BolC5t34787H Brassica oleracea HOM05D005221 ORTHO05D006355 1.2e-82 310.5 247 81.4
A05p42050 Brassica napus HOM05D005221 ORTHO05D006355 2.7e-82 309.3 247 81.4
Thhalv10021379m.g Eutrema salsugineum HOM05D005221 ORTHO05D006355 5.9e-82 308.1 254 79.9
Sp3g04920 Schrenkiella parvula HOM05D005221 ORTHO05D006355 2.9e-81 305.8 253 80.6
CARHR080490 Cardamine hirsuta HOM05D005221 ORTHO05D006355 1.2e-79 300.4 254 80.3
BraA01t04457Z Brassica rapa HOM05D005221 ORTHO05D006355 4.0e-78 295.4 249 75.9
Aa31LG5G16450 Aethionema arabicum HOM05D005221 ORTHO05D006355 1.8e-70 270.0 246 73.6
BcaC09g47869 Brassica carinata HOM05D005221 ORTHO05D006355 8.1e-63 244.6 245 65.7
BolC1t05645H Brassica oleracea HOM05D005221 ORTHO05D006355 2.3e-62 243.0 247 65.2
THA.LOC104802759 Tarenaya hassleriana HOM05D005221 ORTHO05D006355 4.7e-55 218.8 253 61.7
BraA03t10262Z Brassica rapa HOM05D005221 ORTHO05D006355 2.6e-53 213.0 250 57.6
THA.LOC104818779 Tarenaya hassleriana HOM05D005221 ORTHO05D006355 1.7e-52 210.3 251 66.1
Thhalv10016073m.g Eutrema salsugineum HOM05D005221 ORTHO05D006355 2.9e-52 209.5 261 57.5
BolC3t13571H Brassica oleracea HOM05D005221 ORTHO05D006355 3.5e-50 202.6 247 57.5
Duzib151G0158 Durio zibethinus HOM05D005221 ORTHO05D006355 1.0e-49 201.1 247 53.0
AT5G19340 Arabidopsis thaliana HOM05D005221 ORTHO05D006355 3.9e-49 199.1 263 54.8
Thecc.04G227300 Theobroma cacao HOM05D005221 ORTHO05D006355 3.9e-49 199.1 258 58.1
Duzib212G0790 Durio zibethinus HOM05D005221 ORTHO05D006355 6.6e-49 198.4 244 53.7
Nn4g26263 Nelumbo nucifera HOM05D005221 ORTHO05D006355 1.5e-48 197.2 237 51.1
Carub.0006s1768 Capsella rubella HOM05D005221 ORTHO05D006355 3.3e-48 196.1 258 56.2
C03p11020 Brassica napus HOM05D005221 ORTHO05D006355 4.3e-48 195.7 247 57.9
Manes.03G181200 Manihot esculenta HOM05D005221 ORTHO05D006355 4.3e-48 195.7 242 52.1
BolC9t58548H Brassica oleracea HOM05D005221 ORTHO05D006355 9.6e-48 194.5 271 54.2
FAN07G2107 Fragaria x ananassa HOM05D005221 ORTHO05D006355 1.6e-47 193.7 249 51.4
CSS0023930 Camellia sinensis var. sinensis HOM05D005221 ORTHO05D006355 3.6e-47 192.6 232 52.2
A03p09440 Brassica napus HOM05D005221 ORTHO05D006355 4.7e-47 192.2 246 55.7
QL06p003360 Quercus lobata HOM05D005221 ORTHO05D006355 4.7e-47 192.2 247 51.8
Cpa.g.sc8.322 Carica papaya HOM05D005221 ORTHO05D006355 6.2e-47 191.8 248 53.2
FAN22G0945 Fragaria x ananassa HOM05D005221 ORTHO05D006355 6.2e-47 191.8 245 50.6
FAN12G4146 Fragaria x ananassa HOM05D005221 ORTHO05D006355 1.1e-46 191.0 249 51.0
Potri.010G090700 Populus trichocarpa HOM05D005221 ORTHO05D006355 1.4e-46 190.7 243 55.6
FvH4_4g15060 Fragaria vesca HOM05D005221 ORTHO05D006355 1.8e-46 190.3 247 51.0
AL6G30830 Arabidopsis lyrata HOM05D005221 ORTHO05D006355 2.4e-46 189.9 250 55.2
RcHm_v2.0_Chr4g0416801 Rosa chinensis HOM05D005221 ORTHO05D006355 3.1e-46 189.5 248 50.8
BcaB01g05141 Brassica carinata HOM05D005221 ORTHO05D006355 5.2e-46 188.7 242 56.2
Potri.008G150300 Populus trichocarpa HOM05D005221 ORTHO05D006355 1.2e-45 187.6 228 53.9
Oeu037551.1 Olea europaea HOM05D005221 ORTHO05D006355 1.5e-45 187.2 233 49.8
A10p20340 Brassica napus HOM05D005221 ORTHO05D006355 2.0e-45 186.8 275 53.1
BraA10t44105Z Brassica rapa HOM05D005221 ORTHO05D006355 2.0e-45 186.8 275 53.1
Gohir.A09G214300 Gossypium hirsutum HOM05D005221 ORTHO05D006355 2.0e-45 186.8 237 63.3
Sabra08G0114400 Salix brachista HOM05D005221 ORTHO05D006355 2.0e-45 186.8 228 54.4
Cfa015617 Carpinus fangiana HOM05D005221 ORTHO05D006355 4.4e-45 185.7 249 58.2
BcaB01g04866 Brassica carinata HOM05D005221 ORTHO05D006355 5.8e-45 185.3 246 54.9
Cc03_g03470 Coffea canephora HOM05D005221 ORTHO05D006355 5.8e-45 185.3 235 49.4
Nitab4.5_0000260g0100 Nicotiana tabacum HOM05D005221 ORTHO05D006355 5.8e-45 185.3 242 50.0
Prupe.1G155500 Prunus persica HOM05D005221 ORTHO05D006355 1.7e-44 183.7 246 52.0
TWI53G0458 Tripterygium wilfordii HOM05D005221 ORTHO05D006355 1.7e-44 183.7 233 50.6
BcaC04g18576 Brassica carinata HOM05D005221 ORTHO05D006355 2.2e-44 183.3 277 52.0
C09p56940 Brassica napus HOM05D005221 ORTHO05D006355 2.2e-44 183.3 277 52.0
Sed0008919 Sechium edule HOM05D005221 ORTHO05D006355 2.2e-44 183.3 247 50.6
TWI09G0254 Tripterygium wilfordii HOM05D005221 ORTHO05D006355 2.9e-44 183.0 233 51.5
CiPaw.02G095300 Carya illinoinensis HOM05D005221 ORTHO05D006355 4.9e-44 182.2 242 50.4
Gorai.006G237300 Gossypium raimondii HOM05D005221 ORTHO05D006355 4.9e-44 182.2 236 62.7
Duzib052G0196 Durio zibethinus HOM05D005221 ORTHO05D006355 6.4e-44 181.8 254 46.9
Peaxi162Scf00437g00052 Petunia axillaris HOM05D005221 ORTHO05D006355 6.4e-44 181.8 248 47.2
Sabra10G0052800 Salix brachista HOM05D005221 ORTHO05D006355 6.4e-44 181.8 243 49.0
Gohir.D09G216800 Gossypium hirsutum HOM05D005221 ORTHO05D006355 1.4e-43 180.6 236 62.3
Nitab4.5_0001545g0020 Nicotiana tabacum HOM05D005221 ORTHO05D006355 1.4e-43 180.6 246 49.2
COL.COLO4_06196 Corchorus olitorius HOM05D005221 ORTHO05D006355 1.9e-43 180.3 261 48.3
MD16G1188800 Malus domestica HOM05D005221 ORTHO05D006355 2.4e-43 179.9 232 51.7
Sp6g25070 Schrenkiella parvula HOM05D005221 ORTHO05D006355 2.4e-43 179.9 261 52.9
CAN.G873.5 Capsicum annuum HOM05D005221 ORTHO05D006355 1.6e-42 177.2 246 51.6
MELO3C014491.2 Cucumis melo HOM05D005221 ORTHO05D006355 4.6e-42 175.6 242 56.6
Glyma.20G143700 Glycine max HOM05D005221 ORTHO05D006355 6.0e-42 175.3 242 57.0
ECA234G2268 Erigeron canadensis HOM05D005221 ORTHO05D006355 7.8e-42 174.9 237 53.2
EL10As3g23360 Beta vulgaris HOM05D005221 ORTHO05D006355 1.0e-41 174.5 257 47.1
ClCG06G006000 Citrullus lanatus HOM05D005221 ORTHO05D006355 1.0e-41 174.5 238 57.1
VMungo0720G0147 Vigna mungo HOM05D005221 ORTHO05D006355 1.0e-41 174.5 236 58.5
Sed0012211 Sechium edule HOM05D005221 ORTHO05D006355 1.3e-41 174.1 246 48.8
CARHR193620 Cardamine hirsuta HOM05D005221 ORTHO05D006355 2.3e-41 173.3 247 52.6
Sopen09g030550 Solanum pennellii HOM05D005221 ORTHO05D006355 3.0e-41 172.9 245 50.6
Solyc09g075740.1 Solanum lycopersicum HOM05D005221 ORTHO05D006355 3.9e-41 172.6 245 51.4
TAR362G0899 Trochodendron aralioides HOM05D005221 ORTHO05D006355 5.1e-41 172.2 228 50.0
CsaV3_6G038280 Cucumis sativus L. HOM05D005221 ORTHO05D006355 6.6e-41 171.8 242 59.1
Rhsim04G0205100 Rhododendron simsii HOM05D005221 ORTHO05D006355 6.6e-41 171.8 234 46.6
Manes.15G026700 Manihot esculenta HOM05D005221 ORTHO05D006355 8.7e-41 171.4 248 48.8
Sopen06g019400 Solanum pennellii HOM05D005221 ORTHO05D006355 8.7e-41 171.4 244 48.4
MD13G1188400 Malus domestica HOM05D005221 ORTHO05D006355 1.5e-40 170.6 239 47.7
Solyc06g054280.1 Solanum lycopersicum HOM05D005221 ORTHO05D006355 1.5e-40 170.6 244 48.0
Ca_10924_v3 Cicer arietinum L. HOM05D005221 ORTHO05D006355 3.3e-40 169.5 256 47.7
Peaxi162Scf00642g00022 Petunia axillaris HOM05D005221 ORTHO05D006355 4.3e-40 169.1 245 48.2
Phvul.007G054700 Phaseolus vulgaris HOM05D005221 ORTHO05D006355 4.3e-40 169.1 237 57.4
CAN.G668.8 Capsicum annuum HOM05D005221 ORTHO05D006355 5.6e-40 168.7 248 42.3
PGSC0003DMG400011822 Solanum tuberosum HOM05D005221 ORTHO05D006355 7.3e-40 168.3 244 48.4
MSTRG.21844 Avicennia marina HOM05D005221 ORTHO05D006355 1.3e-39 167.5 240 46.7
Aqoxy2G03348 Aquilegia oxysepala HOM05D005221 ORTHO05D006355 2.1e-39 166.8 230 48.7
Lj5g0028012 Lotus japonicus HOM05D005221 ORTHO05D006355 2.1e-39 166.8 233 49.4
Nn1g02242 Nelumbo nucifera HOM05D005221 ORTHO05D006355 2.1e-39 166.8 249 47.0
CiPaw.01G163700 Carya illinoinensis HOM05D005221 ORTHO05D006355 2.8e-39 166.4 220 50.5
Eucgr.B01092 Eucalyptus grandis HOM05D005221 ORTHO05D006355 4.8e-39 165.6 271 43.9
Lj3P740T18 Lonicera japonica HOM05D005221 ORTHO05D006355 4.8e-39 165.6 234 58.1
Lalb_Chr06g0160581 Lupinus albus HOM05D005221 ORTHO05D006355 8.1e-39 164.9 239 56.1
TPR.G5529 Trifolium pratense HOM05D005221 ORTHO05D006355 8.1e-39 164.9 237 48.5
Ciclev10005615m.g Citrus clementina HOM05D005221 ORTHO05D006355 1.8e-38 163.7 249 49.0
PGSC0003DMG400031851 Solanum tuberosum HOM05D005221 ORTHO05D006355 1.8e-38 163.7 245 46.5
Glyma.10G249900 Glycine max HOM05D005221 ORTHO05D006355 2.4e-38 163.3 241 52.7
DCAR_030618 Daucus carota HOM05D005221 ORTHO05D006355 4.0e-38 162.5 247 48.2
Lsat_1_v5_gn_5_148500 Lactuca sativa HOM05D005221 ORTHO05D006355 9.0e-38 161.4 237 54.0
Medtr1g104840 Medicago truncatula HOM05D005221 ORTHO05D006355 9.0e-38 161.4 234 48.7
BcaB08g36581 Brassica carinata HOM05D005221 ORTHO05D006355 1.5e-37 160.6 266 51.5
Nitab4.5_0000321g0080 Nicotiana tabacum HOM05D005221 ORTHO05D006355 2.0e-37 160.2 244 50.0
Actinidia23488 Actinidia chinensis HOM05D005221 ORTHO05D006355 2.6e-37 159.8 234 45.7
PGR142G0441 Punica granatum HOM05D005221 ORTHO05D006355 1.3e-36 157.5 266 50.4
Sc13g0004240 Simmondsia chinensis HOM05D005221 ORTHO05D006355 2.9e-36 156.4 268 46.6
FAN17G2349 Fragaria x ananassa HOM05D005221 ORTHO05D006355 3.8e-36 156.0 248 43.1
HanXRQChr10g0296561 Helianthus annuus HOM05D005221 ORTHO05D006355 4.9e-36 155.6 244 48.4
Hma1.2p1_0511F.1_g168910 Hydrangea macrophylla HOM05D005221 ORTHO05D006355 1.4e-35 154.1 222 57.2
HanXRQChr04g0110301 Helianthus annuus HOM05D005221 ORTHO05D006355 1.9e-35 153.7 229 52.8
CANSAT78G1299 Cannabis sativa HOM05D005221 ORTHO05D006355 5.4e-35 152.1 271 42.4
Dinv38425 Davidia involucrata HOM05D005221 ORTHO05D006355 5.4e-35 152.1 176 58.0
MBI17_g31753_MAGBIO Magnolia biondii HOM05D005221 ORTHO05D006355 3.5e-34 149.4 230 41.7
Sc19g0004310 Simmondsia chinensis HOM05D005221 ORTHO05D006355 4.6e-34 149.1 250 46.4
TAR636G2071 Trochodendron aralioides HOM05D002203 ORTHO05D002647 6.0e-34 148.7 147 56.5
SGA_v2.0_scaffold10G05107 Striga asiatica HOM05D005221 ORTHO05D006355 1.0e-33 147.9 246 52.0
DCAR_002395 Daucus carota HOM05D005221 ORTHO05D006355 1.3e-33 147.5 244 46.3
Aqoxy5G00503 Aquilegia oxysepala HOM05D005221 ORTHO05D006355 1.1e-32 144.4 251 49.0
BcaNung07026 Brassica carinata HOM05D005221 ORTHO05D006355 2.5e-32 143.3 161 54.0
Oeu029026.1 Olea europaea HOM05D005221 ORTHO05D006355 2.5e-32 143.3 180 48.9
Migut.N00171 Erythranthe guttata HOM05D005221 ORTHO05D006355 4.3e-32 142.5 245 41.6
PGR004G1499 Punica granatum HOM05D005221 ORTHO05D006355 1.3e-31 141.0 270 39.6
DCAR_024599 Daucus carota HOM05D005221 ORTHO05D006355 1.4e-30 137.5 232 40.9
Nitab4.5_0007609g0020 Nicotiana tabacum HOM05D005221 ORTHO05D006355 1.4e-30 137.5 155 52.9
Ah.04g154490 Amaranthus hybridus HOM05D005221 ORTHO05D006355 7.9e-26 121.7 203 53.7
MSTRG.4014 Avicennia marina HOM05D005221 ORTHO05D006355 6.7e-25 118.6 226 38.5
Lj6P597T84 Lonicera japonica HOM05D005221 ORTHO05D006355 1.5e-24 117.5 183 49.2
Hma1.2p1_0995F.1_g245620 Hydrangea macrophylla HOM05D005221 ORTHO05D006355 3.3e-24 116.3 170 42.4
Atru.chr4.2515 Acer truncatum HOM05D005221 ORTHO05D006355 9.0e-22 108.2 246 37.8
PSO302G0248 Papaver somniferum HOM05D005221 ORTHO05D006355 1.3e-20 104.4 157 43.9
AUR62038640 Chenopodium quinoa HOM05D005221 ORTHO05D006355 1.0e-17 94.7 160 38.1
Nn5g28878 Nelumbo nucifera HOM05D005221 ORTHO05D006355 1.8e-14 84.0 102 50.0
SGA_v2.0_scaffold237G43792 Striga asiatica HOM05D005221 ORTHO05D006355 2.4e-14 83.6 156 39.1
Nn3g20708 Nelumbo nucifera HOM05D005221 ORTHO05D006355 1.5e-13 80.9 93 50.5
arahy.Tifrunner.gnm1.ann1.0RM5BV Arachis hypogaea HOM05D005221 ORTHO05D006355 3.8e-12 76.3 260 40.0
SGA_v2.0_scaffold39G15291 Striga asiatica HOM05D005221 ORTHO05D006355 1.6e-10 70.9 243 31.7
Psat6g208720 Pisum sativum HOM05D005221 ORTHO05D006355 2.1e-10 70.5 38 78.9
ATR0626G396 Amborella trichopoda HOM05D005221 ORTHO05D006355 2.7e-10 70.1 148 39.2
AUR62038093 Chenopodium quinoa HOM05D005221 ORTHO05D006355 3.5e-10 69.7 152 34.2
ATR1098G156 Amborella trichopoda HOM05D003370 ORTHO05D003848 4.3e-08 62.8 164 34.1
MBI18_g28204_MAGBIO Magnolia biondii HOM05D003370 ORTHO05D003848 4.3e-08 62.8 150 34.0
Ciclev10020533m.g Citrus clementina HOM05D003370 ORTHO05D003848 4.8e-07 59.3 151 34.4
A03p37900 Brassica napus HOM05D003370 ORTHO05D003848 2.4e-06 57.0 107 40.2
C06p10920 Brassica napus HOM05D003370 ORTHO05D003848 2.4e-06 57.0 108 38.9
BraA03t12944Z Brassica rapa HOM05D003370 ORTHO05D003848 2.4e-06 57.0 107 40.2
Nitab4.5_0001749g0060 Nicotiana tabacum HOM05D003370 ORTHO05D003848 2.4e-06 57.0 162 29.6
PGSC0003DMG400022132 Solanum tuberosum HOM05D003370 ORTHO05D003848 3.1e-06 56.6 168 33.3
Nitab4.5_0007742g0010 Nicotiana tabacum HOM05D003370 ORTHO05D003848 4.1e-06 56.2 168 29.8
CARHR087500 Cardamine hirsuta HOM05D003370 ORTHO05D003848 5.3e-06 55.8 101 40.6
MBI02_g25678_MAGBIO Magnolia biondii HOM05D003370 ORTHO05D003848 5.3e-06 55.8 151 33.1
PSO675G2615 Papaver somniferum HOM05D002458 ORTHO05D002603 5.3e-06 55.8 146 32.9
Sp3g11120 Schrenkiella parvula HOM05D003370 ORTHO05D003848 5.3e-06 55.8 114 41.2
Aa31LG8G210 Aethionema arabicum HOM05D003370 ORTHO05D003848 6.9e-06 55.5 106 39.6
BcaB02g08663 Brassica carinata HOM05D003370 ORTHO05D003848 6.9e-06 55.5 149 32.9
BraSC56t46389Z Brassica rapa HOM05D003370 ORTHO05D003848 6.9e-06 55.5 109 38.5
Carub.0003s1231 Capsella rubella HOM05D003370 ORTHO05D003848 6.9e-06 55.5 114 42.1
Solyc02g065020.2 Solanum lycopersicum HOM05D002458 ORTHO05D002603 6.9e-06 55.5 138 34.1
BcaB04g18740 Brassica carinata HOM05D003370 ORTHO05D003848 9.0e-06 55.1 125 39.2
BcaB07g33177 Brassica carinata HOM05D003370 ORTHO05D003848 9.0e-06 55.1 109 35.8
Nn1g04890 Nelumbo nucifera HOM05D002458 ORTHO05D002603 9.0e-06 55.1 138 32.6
Nn7g37824 Nelumbo nucifera HOM05D003370 ORTHO05D003848 9.0e-06 55.1 144 31.2
Nn7g37825 Nelumbo nucifera HOM05D003370 ORTHO05D003848 9.0e-06 55.1 144 31.2
PSO541G0955 Papaver somniferum HOM05D002458 ORTHO05D002603 9.0e-06 55.1 146 32.2
SEGI_26176 Sequoiadendron giganteum HOM05D003370 ORTHO05D003848 9.0e-06 55.1 151 35.8
TAR627G0521 Trochodendron aralioides HOM05D003370 ORTHO05D003848 9.0e-06 55.1 156 33.3
TAR629G0110 Trochodendron aralioides HOM05D003370 ORTHO05D003848 9.0e-06 55.1 148 33.1


User provided reference genes

Program Settings