Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s0533 Capsella rubella HOM05D007325 ORTHO05D009251 1.2e-44 183.0 106 100.0
Thhalv10022316m.g Eutrema salsugineum HOM05D007325 ORTHO05D009251 6.1e-36 154.1 108 76.9
A05p42120 Brassica napus HOM05D007325 ORTHO05D009251 1.7e-33 146.0 111 82.0
BcaC05g30077 Brassica carinata HOM05D007325 ORTHO05D009251 2.2e-33 145.6 110 82.7
C05p61330 Brassica napus HOM05D007325 ORTHO05D009251 2.2e-33 145.6 110 82.7
BolC5t34792H Brassica oleracea HOM05D007325 ORTHO05D009251 2.2e-33 145.6 110 82.7
Sp3g04850 Schrenkiella parvula HOM05D007325 ORTHO05D009251 3.7e-33 144.8 102 75.5
AL3G16720 Arabidopsis lyrata HOM05D007325 ORTHO05D009251 6.4e-33 144.1 106 84.9
BraA05t22930Z Brassica rapa HOM05D007325 ORTHO05D009251 1.2e-31 139.8 96 86.5
BcaB04g19232 Brassica carinata HOM05D007325 ORTHO05D009251 1.6e-31 139.4 106 85.8
CARHR080420 Cardamine hirsuta HOM05D007325 ORTHO05D009251 1.0e-30 136.7 105 81.9
Aa31LG5G16370 Aethionema arabicum HOM05D007325 ORTHO05D009251 5.6e-29 131.0 107 77.6
BraA03t12615Z Brassica rapa HOM05D007325 ORTHO05D009251 5.6e-29 131.0 110 78.2
BcaC01g04310 Brassica carinata HOM05D007325 ORTHO05D009251 3.6e-28 128.3 110 70.0
C03p41860 Brassica napus HOM05D007325 ORTHO05D009251 3.6e-28 128.3 110 70.0
BolC3t16469H Brassica oleracea HOM05D007325 ORTHO05D009251 3.6e-28 128.3 110 70.0
A03p34390 Brassica napus HOM05D007325 ORTHO05D009251 1.2e-26 123.2 110 76.4
Aa31LG11G10030 Aethionema arabicum HOM05D007325 ORTHO05D009251 6.4e-17 90.9 101 66.3
Thhalv10005170m.g Eutrema salsugineum HOM05D007325 ORTHO05D009251 7.1e-16 87.4 97 64.9
Carub.0006s2420 Capsella rubella HOM05D007325 ORTHO05D009251 1.9e-13 79.3 108 50.9
AT5G26731 Arabidopsis thaliana HOM05D007325 ORTHO05D009251 4.3e-13 78.2 97 63.9
A06p36820 Brassica napus HOM05D007325 ORTHO05D009251 4.3e-13 78.2 94 62.8
CANSAT54G2629 Cannabis sativa HOM05D007325 ORTHO05D009251 4.3e-13 78.2 93 49.5
C07p41670 Brassica napus HOM05D007325 ORTHO05D009251 7.3e-13 77.4 89 64.0
BraA06t26608Z Brassica rapa HOM05D007325 ORTHO05D009251 9.5e-13 77.0 94 61.7
Cc02_g36910 Coffea canephora HOM05D007325 ORTHO05D009251 9.5e-13 77.0 89 50.6
THA.LOC104822290 Tarenaya hassleriana HOM05D007325 ORTHO05D009251 9.5e-13 77.0 89 56.2
C09p06380 Brassica napus HOM05D007325 ORTHO05D009251 1.2e-12 76.6 104 57.7
BcaNung02823 Brassica carinata HOM05D007325 ORTHO05D009251 3.6e-12 75.1 89 62.9
BolC7t44702H Brassica oleracea HOM05D007325 ORTHO05D009251 3.6e-12 75.1 89 62.9
Sp2g21390 Schrenkiella parvula HOM05D007325 ORTHO05D009251 3.6e-12 75.1 97 60.8
BolC9t53557H Brassica oleracea HOM05D007325 ORTHO05D009251 6.2e-12 74.3 104 56.7
AL6G38400 Arabidopsis lyrata HOM05D007325 ORTHO05D009251 1.1e-11 73.6 100 62.0
BcaC04g23624 Brassica carinata HOM05D007325 ORTHO05D009251 1.4e-11 73.2 104 55.8
MD12G1197000 Malus domestica HOM05D007325 ORTHO05D009251 1.4e-11 73.2 104 47.1
HanXRQChr04g0108581 Helianthus annuus HOM05D007325 ORTHO05D009251 1.8e-11 72.8 96 59.4
Potri.005G000700 Populus trichocarpa HOM05D007325 ORTHO05D009251 3.1e-11 72.0 98 49.0
Thecc.05G331600 Theobroma cacao HOM05D007325 ORTHO05D009251 3.1e-11 72.0 99 50.5
CSS0011097 Camellia sinensis var. sinensis HOM05D007325 ORTHO05D009251 4.0e-11 71.6 85 63.5
CARHR186980 Cardamine hirsuta HOM05D007325 ORTHO05D009251 4.0e-11 71.6 91 63.7
PGSC0003DMG400018232 Solanum tuberosum HOM05D007325 ORTHO05D009251 4.0e-11 71.6 88 50.0
Phvul.001G220700 Phaseolus vulgaris HOM05D007325 ORTHO05D009251 5.2e-11 71.2 85 51.8
A09p05780 Brassica napus HOM05D007325 ORTHO05D009251 6.8e-11 70.9 98 58.2
BraA09t36219Z Brassica rapa HOM05D007325 ORTHO05D009251 6.8e-11 70.9 98 58.2
Sopen01g044880 Solanum pennellii HOM05D007325 ORTHO05D009251 6.8e-11 70.9 89 57.3
Prupe.6G302100 Prunus persica HOM05D007325 ORTHO05D009251 2.0e-10 69.3 108 46.3
Lalb_Chr04g0260261 Lupinus albus HOM05D007325 ORTHO05D009251 2.6e-10 68.9 78 52.6
arahy.Tifrunner.gnm1.ann1.Y42B53 Arachis hypogaea HOM05D007325 ORTHO05D009251 3.4e-10 68.6 91 48.4
Lalb_Chr21g0309941 Lupinus albus HOM05D007325 ORTHO05D009251 3.4e-10 68.6 82 52.4
Glyma.03G226900 Glycine max HOM05D007325 ORTHO05D009251 4.4e-10 68.2 85 50.6
Lalb_Chr02g0147341 Lupinus albus HOM05D007325 ORTHO05D009251 4.4e-10 68.2 96 50.0
Cfa004401 Carpinus fangiana HOM05D008494 ORTHO05D010021 5.8e-10 67.8 93 54.8
Manes.09G182800 Manihot esculenta HOM05D007325 ORTHO05D009251 5.8e-10 67.8 98 49.0
FvH4_6g08790 Fragaria vesca HOM05D007325 ORTHO05D009251 9.9e-10 67.0 91 58.2
FAN02G3982 Fragaria x ananassa HOM05D007325 ORTHO05D009251 1.7e-09 66.2 93 57.0
FAN05G0265 Fragaria x ananassa HOM05D007325 ORTHO05D009251 1.7e-09 66.2 93 57.0
FAN05G4266 Fragaria x ananassa HOM05D007325 ORTHO05D009251 1.7e-09 66.2 93 57.0
Lj5P313T22 Lonicera japonica HOM05D007325 ORTHO05D009251 1.7e-09 66.2 82 48.8
RcHm_v2.0_Chr3g0459051 Rosa chinensis HOM05D007325 ORTHO05D009251 1.7e-09 66.2 101 45.5
AT3G05937 Arabidopsis thaliana HOM05D007325 ORTHO05D009251 2.2e-09 65.9 56 66.1
VMungo1383G0662 Vigna mungo HOM05D007325 ORTHO05D009251 2.9e-09 65.5 111 45.0
Manes.08G105900 Manihot esculenta HOM05D007325 ORTHO05D009251 3.8e-09 65.1 94 50.0
Atru.chr12.1499 Acer truncatum HOM05D007325 ORTHO05D009251 4.9e-09 64.7 71 54.9
Dinv30961 Davidia involucrata HOM05D007325 ORTHO05D009251 4.9e-09 64.7 85 56.5
FAN09G1210 Fragaria x ananassa HOM05D007325 ORTHO05D009251 4.9e-09 64.7 101 49.5
BcaB04g19727 Brassica carinata HOM05D003663 ORTHO05D005327 6.4e-09 64.3 57 70.2
Dinv24533 Davidia involucrata HOM05D003267 ORTHO05D003955 6.4e-09 64.3 89 49.4
TAR365G0322 Trochodendron aralioides HOM05D007325 ORTHO05D009251 6.4e-09 64.3 70 68.6
Lalb_Chr06g0167201 Lupinus albus HOM05D007325 ORTHO05D009251 1.9e-08 62.8 80 55.0
Oeu061920.1 Olea europaea HOM05D007325 ORTHO05D009251 2.4e-08 62.4 94 45.7
MBI18_g28938_MAGBIO Magnolia biondii HOM05D007325 ORTHO05D009251 3.2e-08 62.0 81 58.0
Gohir.D13G117300 Gossypium hirsutum HOM05D007325 ORTHO05D009251 4.1e-08 61.6 84 45.2
Eucgr.B01357 Eucalyptus grandis HOM05D007325 ORTHO05D009251 5.4e-08 61.2 124 41.9
Glyma.20G089800 Glycine max HOM05D007325 ORTHO05D009251 9.2e-08 60.5 101 44.6
Gohir.A13G114400 Gossypium hirsutum HOM05D007325 ORTHO05D009251 9.2e-08 60.5 84 45.2
PGR119G2017 Punica granatum HOM05D007325 ORTHO05D009251 1.2e-07 60.1 82 47.6
Lj1g0016832 Lotus japonicus HOM05D007325 ORTHO05D009251 1.6e-07 59.7 75 52.0
MD04G1183600 Malus domestica HOM05D007325 ORTHO05D009251 1.6e-07 59.7 109 40.4
Ciclev10030031m.g Citrus clementina HOM05D007325 ORTHO05D009251 2.1e-07 59.3 75 49.3
BcaNung03959 Brassica carinata HOM05D003663 ORTHO05D005327 2.7e-07 58.9 98 43.9
Glyma.19G223800 Glycine max HOM05D007325 ORTHO05D009251 3.5e-07 58.5 83 49.4
Lsat_1_v5_gn_9_83741 Lactuca sativa HOM05D007325 ORTHO05D009251 4.6e-07 58.2 77 46.8
Lj5g0004840 Lotus japonicus HOM05D007325 ORTHO05D009251 4.6e-07 58.2 106 42.5
Psat6g156800 Pisum sativum HOM05D007325 ORTHO05D009251 4.6e-07 58.2 92 46.7
TWI14G0425 Tripterygium wilfordii HOM05D007325 ORTHO05D009251 4.6e-07 58.2 77 48.1
Lalb_Chr15g0077801 Lupinus albus HOM05D007325 ORTHO05D009251 6.0e-07 57.8 80 48.8
TAR365G1009 Trochodendron aralioides HOM05D007325 ORTHO05D009251 6.0e-07 57.8 82 43.9
Gorai.013G131900 Gossypium raimondii HOM05D007325 ORTHO05D009251 7.8e-07 57.4 84 44.0
TPR.G3077 Trifolium pratense HOM05D007325 ORTHO05D009251 7.8e-07 57.4 84 47.6
Potri.005G000401 Populus trichocarpa HOM05D007325 ORTHO05D009251 1.3e-06 56.6 68 60.3
Lj9P239T47 Lonicera japonica HOM05D007325 ORTHO05D009251 3.9e-06 55.1 44 65.9
Migut.B00680 Erythranthe guttata HOM05D007325 ORTHO05D009251 5.1e-06 54.7 88 42.0
SalBow6G6911 Salvia bowleyana HOM05D007325 ORTHO05D009251 6.6e-06 54.3 86 51.2
Eucgr.H01350 Eucalyptus grandis HOM05D007325 ORTHO05D009251 8.6e-06 53.9 93 41.9


User provided reference genes

Program Settings