Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s0477 Capsella rubella HOM05D005965 ORTHO05D007283 8.8e-254 879.8 439 100.0
AL3G16080 Arabidopsis lyrata HOM05D005965 ORTHO05D007283 1.2e-231 806.2 441 92.7
AT3G05480 Arabidopsis thaliana HOM05D005965 ORTHO05D007283 3.6e-231 804.7 441 92.5
Thhalv10020753m.g Eutrema salsugineum HOM05D005965 ORTHO05D007283 5.4e-227 790.8 439 89.7
BcaC05g30118 Brassica carinata HOM05D005965 ORTHO05D007283 2.1e-223 778.9 439 87.7
Sp3g04310 Schrenkiella parvula HOM05D005965 ORTHO05D007283 4.9e-220 767.7 439 87.2
C05p61750 Brassica napus HOM05D005965 ORTHO05D007283 2.4e-219 765.4 441 87.3
BolC5t34833H Brassica oleracea HOM05D005965 ORTHO05D007283 1.7e-217 759.2 456 84.6
BcaC05g30164 Brassica carinata HOM05D005965 ORTHO05D007283 2.5e-216 755.4 465 83.0
Aa31LG5G15920 Aethionema arabicum HOM05D005965 ORTHO05D007283 3.0e-193 678.7 496 72.8
THA.LOC104818713 Tarenaya hassleriana HOM05D005965 ORTHO05D007283 4.3e-192 674.9 449 75.9
BraA05t23035Z Brassica rapa HOM05D005965 ORTHO05D007283 2.9e-172 609.0 353 86.7
Gohir.D11G277600 Gossypium hirsutum HOM05D005965 ORTHO05D007283 2.9e-164 582.4 451 67.0
Potri.013G017500 Populus trichocarpa HOM05D005965 ORTHO05D007283 2.9e-164 582.4 453 66.4
Atru.chr2.26 Acer truncatum HOM05D005965 ORTHO05D007283 1.1e-163 580.5 451 67.6
Prupe.6G321300 Prunus persica HOM05D005965 ORTHO05D007283 1.2e-162 577.0 453 66.7
CSS0001755 Camellia sinensis var. sinensis HOM05D005965 ORTHO05D007283 2.7e-162 575.9 443 65.9
Sabra13G0016500 Salix brachista HOM05D005965 ORTHO05D007283 4.6e-162 575.1 455 65.5
Gorai.007G299800 Gossypium raimondii HOM05D005965 ORTHO05D007283 7.9e-162 574.3 457 66.1
MD04G1201200 Malus domestica HOM05D005965 ORTHO05D007283 1.3e-161 573.5 450 66.0
Sabra13G0020500 Salix brachista HOM05D005965 ORTHO05D007283 1.3e-161 573.5 428 68.0
CiPaw.07G021000 Carya illinoinensis HOM05D005965 ORTHO05D007283 8.7e-161 570.9 451 65.2
Ciclev10001128m.g Citrus clementina HOM05D005965 ORTHO05D007283 7.4e-160 567.8 446 66.1
GSVIVG01031150001 Vitis vinifera HOM05D005965 ORTHO05D007283 2.1e-159 566.2 449 65.9
Cpa.g.sc48.91 Carica papaya HOM05D005965 ORTHO05D007283 3.7e-159 565.5 452 67.0
QL03p021207 Quercus lobata HOM05D005965 ORTHO05D007283 1.5e-157 560.1 453 64.0
Cfa006624 Carpinus fangiana HOM05D005965 ORTHO05D007283 3.8e-156 555.4 455 64.4
Manes.08G118100 Manihot esculenta HOM05D005965 ORTHO05D007283 2.5e-155 552.7 450 63.6
Actinidia21493 Actinidia chinensis HOM05D005965 ORTHO05D007283 7.9e-154 547.7 448 62.9
Gohir.A11G267700 Gossypium hirsutum HOM05D005965 ORTHO05D007283 1.8e-153 546.6 450 64.4
Lj1g0019406 Lotus japonicus HOM05D005965 ORTHO05D007283 1.1e-152 543.9 450 63.3
TAR362G0609 Trochodendron aralioides HOM05D005965 ORTHO05D007283 1.1e-152 543.9 450 63.3
Sed0024378 Sechium edule HOM05D005965 ORTHO05D007283 1.9e-152 543.1 457 62.1
TWI12G0462 Tripterygium wilfordii HOM05D005965 ORTHO05D007283 1.9e-152 543.1 449 64.6
Rhsim05G0139400 Rhododendron simsii HOM05D005965 ORTHO05D007283 4.3e-152 542.0 486 59.1
Medtr7g113100 Medicago truncatula HOM05D005965 ORTHO05D007283 5.7e-152 541.6 449 62.8
CsaV3_2G006620 Cucumis sativus L. HOM05D005965 ORTHO05D007283 7.4e-152 541.2 462 62.1
COL.COLO4_10514 Corchorus olitorius HOM05D005965 ORTHO05D007283 3.7e-151 538.9 411 67.4
ClCG02G015450 Citrullus lanatus HOM05D005965 ORTHO05D007283 8.2e-151 537.7 460 62.2
arahy.Tifrunner.gnm1.ann1.DHC6FB Arachis hypogaea HOM05D005965 ORTHO05D007283 6.9e-150 534.6 432 64.1
FAN14G0885 Fragaria x ananassa HOM05D005965 ORTHO05D007283 6.9e-150 534.6 452 62.4
Dinv40342 Davidia involucrata HOM05D005965 ORTHO05D007283 2.0e-149 533.1 338 76.6
Oeu043357.2 Olea europaea HOM05D005965 ORTHO05D007283 4.5e-149 531.9 447 63.1
arahy.Tifrunner.gnm1.ann1.79NSX3 Arachis hypogaea HOM05D005965 ORTHO05D007283 1.7e-148 530.0 432 63.9
TPR.G33209 Trifolium pratense HOM05D005965 ORTHO05D007283 5.0e-148 528.5 451 61.2
RcHm_v2.0_Chr3g0455661 Rosa chinensis HOM05D005965 ORTHO05D007283 8.5e-148 527.7 452 61.9
DCAR_003352 Daucus carota HOM05D005965 ORTHO05D007283 1.9e-147 526.6 467 58.2
Eucgr.H04531 Eucalyptus grandis HOM05D005965 ORTHO05D007283 2.5e-147 526.2 453 61.8
Aqoxy2G02987 Aquilegia oxysepala HOM05D005965 ORTHO05D007283 3.2e-147 525.8 448 62.5
VMungo0540G0496 Vigna mungo HOM05D005965 ORTHO05D007283 4.2e-147 525.4 451 61.2
PGR031G2641 Punica granatum HOM05D005965 ORTHO05D007283 5.5e-147 525.0 446 60.5
Sc16g0008610 Simmondsia chinensis HOM05D005965 ORTHO05D007283 5.5e-147 525.0 449 61.0
Psat0s4314g0040 Pisum sativum HOM05D005965 ORTHO05D007283 1.6e-146 523.5 474 58.9
Glyma.03G236100 Glycine max HOM05D005965 ORTHO05D007283 3.6e-146 522.3 453 61.6
MSTRG.20421 Avicennia marina HOM05D005965 ORTHO05D007283 1.0e-145 520.8 449 61.0
Lalb_Chr18g0045721 Lupinus albus HOM05D005965 ORTHO05D007283 1.0e-145 520.8 449 60.6
Hma1.2p1_1292F.1_g273670 Hydrangea macrophylla HOM05D005965 ORTHO05D007283 1.8e-145 520.0 339 74.0
Nn3g21434 Nelumbo nucifera HOM05D005965 ORTHO05D007283 1.8e-145 520.0 448 61.4
EL10Ac4g09921 Beta vulgaris HOM05D005965 ORTHO05D007283 3.0e-145 519.2 449 59.7
Glyma.19G233800 Glycine max HOM05D005965 ORTHO05D007283 3.9e-145 518.8 453 61.1
FAN02G0246 Fragaria x ananassa HOM05D005965 ORTHO05D007283 7.4e-144 514.6 453 61.1
Cc02_g33090 Coffea canephora HOM05D005965 ORTHO05D007283 2.8e-143 512.7 448 61.4
PSO151G0070 Papaver somniferum HOM05D005965 ORTHO05D007283 1.1e-142 510.8 447 61.3
ECA246G4331 Erigeron canadensis HOM05D005965 ORTHO05D007283 5.3e-142 508.4 447 60.6
CARHR079860 Cardamine hirsuta HOM05D005965 ORTHO05D007283 2.0e-141 506.5 255 96.5
FvH4_6g06510 Fragaria vesca HOM05D005965 ORTHO05D007283 4.5e-141 505.4 386 66.8
Phvul.006G090000 Phaseolus vulgaris HOM05D005965 ORTHO05D007283 1.0e-140 504.2 454 59.0
Migut.G01001 Erythranthe guttata HOM05D005965 ORTHO05D007283 1.3e-140 503.8 448 60.0
FAN05G3147 Fragaria x ananassa HOM05D005965 ORTHO05D007283 1.3e-140 503.8 386 66.8
Sopen10g013470 Solanum pennellii HOM05D005965 ORTHO05D007283 6.5e-140 501.5 441 58.5
Solyc10g044780.2 Solanum lycopersicum HOM05D005965 ORTHO05D007283 5.5e-139 498.4 441 58.3
unitig_699.g19668 Utricularia gibba HOM05D005965 ORTHO05D007283 5.5e-139 498.4 450 57.8
MBI19_g29225_MAGBIO Magnolia biondii HOM05D005965 ORTHO05D007283 9.4e-139 497.7 455 58.9
PGSC0003DMG400007478 Solanum tuberosum HOM05D005965 ORTHO05D007283 1.2e-138 497.3 441 58.3
Lj9A144T46 Lonicera japonica HOM05D005965 ORTHO05D007283 2.7e-138 496.1 338 71.9
Nitab4.5_0001129g0130 Nicotiana tabacum HOM05D005965 ORTHO05D007283 2.7e-138 496.1 453 59.2
Hund07094 Selenicereus undatus HOM05D005965 ORTHO05D007283 6.1e-138 495.0 456 57.5
Peaxi162Scf00949g00112 Petunia axillaris HOM05D005965 ORTHO05D007283 7.9e-138 494.6 441 58.3
Ca_05803_v3 Cicer arietinum L. HOM05D005965 ORTHO05D007283 8.8e-137 491.1 407 62.9
Ah.04g161100 Amaranthus hybridus HOM05D005965 ORTHO05D007283 2.0e-136 490.0 450 58.9
HanXRQChr03g0072671 Helianthus annuus HOM05D005965 ORTHO05D007283 5.7e-136 488.4 448 57.8
CAN.G1.32 Capsicum annuum HOM05D005965 ORTHO05D007283 7.4e-136 488.0 441 57.6
vmacro19747 Vaccinium macrocarpon HOM05D005965 ORTHO05D007283 7.4e-136 488.0 411 61.1
HanXRQChr03g0072661 Helianthus annuus HOM05D005965 ORTHO05D007283 5.3e-134 481.9 471 55.4
Lsat_1_v5_gn_9_124801 Lactuca sativa HOM05D005965 ORTHO05D007283 1.2e-133 480.7 458 58.1
AUR62000770 Chenopodium quinoa HOM05D005965 ORTHO05D007283 1.0e-132 477.6 407 61.4
Eucgr.H04558 Eucalyptus grandis HOM05D005965 ORTHO05D007283 1.3e-132 477.2 394 63.5
Migut.G01092 Erythranthe guttata HOM05D005965 ORTHO05D007283 9.4e-131 471.1 340 67.6
Hma1.2p1_1292F.1_g273680 Hydrangea macrophylla HOM05D005965 ORTHO05D007283 3.9e-129 465.7 335 69.0
ATR0796G244 Amborella trichopoda HOM05D005965 ORTHO05D007283 1.7e-127 460.3 456 53.9
SGA_v2.0_scaffold172G38992 Striga asiatica HOM05D005965 ORTHO05D007283 1.3e-124 450.7 469 53.9
HPP92_000403 Vanilla planifolia HOM05D005965 ORTHO05D007283 1.7e-124 450.3 456 52.4
HPP92_000400 Vanilla planifolia HOM05D005965 ORTHO05D007283 6.5e-124 448.4 456 52.2
Thecc.05G312500 Theobroma cacao HOM05D005965 ORTHO05D007283 1.6e-122 443.7 371 63.9
SHI18108 Sapria himalayana HOM05D005965 ORTHO05D007283 1.2e-117 427.6 317 68.5
BraA05t19070Z Brassica rapa HOM05D005965 ORTHO05D007283 2.9e-116 422.9 245 86.1
AUR62005199 Chenopodium quinoa HOM05D005965 ORTHO05D007283 3.8e-116 422.5 392 57.1
Migut.G01320 Erythranthe guttata HOM05D005965 ORTHO05D007283 9.4e-115 417.9 344 61.9
SEGI_33282 Sequoiadendron giganteum HOM05D005965 ORTHO05D007283 1.8e-113 413.7 475 48.4
Haze_04145 Corylus avellana HOM05D005965 ORTHO05D007283 5.2e-113 412.1 255 76.5
MELO3C031536.2 Cucumis melo HOM05D005965 ORTHO05D007283 1.4e-110 404.1 365 58.6
Eucgr.H04576 Eucalyptus grandis HOM05D005965 ORTHO05D007283 4.2e-107 392.5 253 72.3
Os03g0345100 Oryza sativa ssp. japonica HOM05D005965 ORTHO05D007283 8.6e-100 368.2 451 48.1
CDE02G1352 Ceratophyllum demersum HOM05D005965 ORTHO05D007283 2.3e-97 360.1 439 48.5
Eucgr.H04573 Eucalyptus grandis HOM05D005965 ORTHO05D007283 8.3e-95 351.7 311 57.9
Pp3c7_570 Physcomitrium patens HOM05D005965 ORTHO05D007283 1.1e-94 351.3 385 46.5
SMO134G0282 Selaginella moellendorffii HOM05D005965 ORTHO05D007283 4.6e-93 345.9 343 51.3
Mapoly0078s0014 Marchantia polymorpha HOM05D005965 ORTHO05D007283 7.8e-93 345.1 347 50.7
Pp3c15_2650 Physcomitrium patens HOM05D005965 ORTHO05D007283 7.8e-93 345.1 361 49.3
Eucgr.H04556 Eucalyptus grandis HOM05D005965 ORTHO05D007283 1.7e-92 344.0 289 60.9
Nitab4.5_0001057g0090 Nicotiana tabacum HOM05D005965 ORTHO05D007283 7.5e-88 328.6 353 52.1
SHI32441 Sapria himalayana HOM05D005965 ORTHO05D007283 2.4e-86 323.6 322 56.8
CBR_g180 Chara braunii HOM05D005965 ORTHO05D007283 1.6e-82 310.8 391 46.5
CARHR079870 Cardamine hirsuta HOM05D005965 ORTHO05D007283 2.9e-79 300.1 186 83.9
Zm00001eb016590 Zea mays HOM05D005965 ORTHO05D007283 5.1e-76 289.3 318 48.7
Eucgr.H04569 Eucalyptus grandis HOM05D005965 ORTHO05D007283 2.1e-69 267.3 448 41.3
AL3G16050 Arabidopsis lyrata HOM05D005965 ORTHO05D007283 4.8e-66 256.1 288 51.7
Eucgr.H04571 Eucalyptus grandis HOM05D005965 ORTHO05D007283 2.9e-63 246.9 446 39.7
Psat6g098120 Pisum sativum HOM05D005965 ORTHO05D007283 3.8e-55 219.9 163 66.3
Thecc.07G184800 Theobroma cacao HOM05D005965 ORTHO05D007283 2.5e-51 207.2 234 51.3
Thhalv10022144m.g Eutrema salsugineum HOM05D005965 ORTHO05D007283 3.3e-51 206.8 299 47.2
Thecc.07G184700 Theobroma cacao HOM05D005965 ORTHO05D007283 1.2e-37 161.8 192 53.6
QL03p021253 Quercus lobata HOM05D005965 ORTHO05D007283 1.0e-31 142.1 93 71.0
MCO01G074 Micromonas commoda HOM05D005965 ORTHO05D007283 3.2e-30 137.1 396 29.3
PSO017G4250 Papaver somniferum HOM05D005965 ORTHO05D007283 1.6e-29 134.8 122 56.6
TAR633G2454 Trochodendron aralioides HOM05D005965 ORTHO05D007283 1.5e-27 128.3 134 53.7
Haze_04144 Corylus avellana HOM05D005965 ORTHO05D007283 5.9e-24 116.3 138 54.3
Cre16.g682950 Chlamydomonas reinhardtii HOM05D005965 ORTHO05D007283 2.9e-23 114.0 201 35.8
DCAR_023086 Daucus carota HOM05D007620 ORTHO05D009568 5.0e-23 113.2 60 80.0
Eucgr.H04575 Eucalyptus grandis HOM05D005965 ORTHO05D007283 8.5e-23 112.5 125 46.4
TWI56G1489 Tripterygium wilfordii HOM05D005965 ORTHO05D007283 2.5e-14 84.3 73 58.9
Nitab4.5_0000524g0030 Nicotiana tabacum HOM05D005965 ORTHO05D007283 3.3e-11 73.9 206 34.5
C03p41530 Brassica napus HOM05D033945 ORTHO05D033616 1.5e-06 58.5 45 64.4
BolC3t16434H Brassica oleracea HOM05D033945 ORTHO05D033616 1.5e-06 58.5 45 64.4
SMO274G0013 Selaginella moellendorffii HOM05D005965 ORTHO05D376736 9.4e-06 55.8 98 37.8


User provided reference genes

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