Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s0437 Capsella rubella HOM05D004923 ORTHO05D005940 3.2e-241 838.6 635 100.0
AL3G15510 Arabidopsis lyrata HOM05D004923 ORTHO05D005940 1.6e-168 597.0 636 69.8
AT3G05130 Arabidopsis thaliana HOM05D004923 ORTHO05D005940 3.1e-151 539.7 635 67.7
Sp3g03950 Schrenkiella parvula HOM05D004923 ORTHO05D005940 8.2e-144 515.0 635 60.3
CARHR185930 Cardamine hirsuta HOM05D004923 ORTHO05D005940 1.8e-90 337.8 635 44.1
AT5G27330 Arabidopsis thaliana HOM05D004923 ORTHO05D005940 1.5e-89 334.7 635 49.3
A05p42440 Brassica napus HOM05D004923 ORTHO05D005940 5.1e-85 319.7 636 55.2
C05p62100 Brassica napus HOM05D004923 ORTHO05D005940 6.2e-83 312.8 635 41.9
BolC5t34868H Brassica oleracea HOM05D004923 ORTHO05D005940 6.2e-83 312.8 635 41.9
Thhalv10003823m.g Eutrema salsugineum HOM05D004923 ORTHO05D005940 4.0e-82 310.1 635 53.5
BraA05t23008Z Brassica rapa HOM05D004923 ORTHO05D005940 8.9e-82 308.9 640 43.9
Carub.0006s2521 Capsella rubella HOM05D004923 ORTHO05D005940 4.9e-80 303.1 635 47.9
AL6G39740 Arabidopsis lyrata HOM05D004923 ORTHO05D005940 1.5e-73 281.6 635 49.6
Sp2g20550 Schrenkiella parvula HOM05D004923 ORTHO05D005940 7.1e-71 272.7 635 39.1
BcaNung04359 Brassica carinata HOM05D004923 ORTHO05D005940 1.2e-70 271.9 636 40.4
CARHR079450 Cardamine hirsuta HOM05D004923 ORTHO05D005940 1.5e-65 255.0 634 49.2
C07p40590 Brassica napus HOM05D004923 ORTHO05D005940 4.2e-63 246.9 636 38.2
BcaNung02477 Brassica carinata HOM05D004923 ORTHO05D005940 1.6e-62 245.0 636 41.4
THA.LOC104818671 Tarenaya hassleriana HOM05D004923 ORTHO05D005940 2.4e-58 231.1 636 35.5
THA.LOC104821702 Tarenaya hassleriana HOM05D004923 ORTHO05D005940 6.9e-50 203.0 632 36.4
Aa31LG11G9060 Aethionema arabicum HOM05D004923 ORTHO05D005940 2.9e-48 197.6 635 42.0
BcaC05g29999 Brassica carinata HOM05D004923 ORTHO05D005940 3.9e-45 187.2 625 34.2
QL03p002854 Quercus lobata HOM05D004923 ORTHO05D005940 1.9e-44 184.9 646 42.0
AL3G15330 Arabidopsis lyrata HOM05D004923 ORTHO05D005940 4.3e-44 183.7 200 60.5
A06p37630 Brassica napus HOM05D004923 ORTHO05D005940 9.7e-44 182.6 636 43.6
Cfa006523 Carpinus fangiana HOM05D004923 ORTHO05D005940 2.8e-43 181.0 646 30.0
Manes.09G161700 Manihot esculenta HOM05D004923 ORTHO05D005940 3.7e-43 180.6 639 36.9
CiPaw.07G012700 Carya illinoinensis HOM05D004923 ORTHO05D005940 9.0e-42 176.0 646 33.7
Haze_04263 Corylus avellana HOM05D004923 ORTHO05D005940 1.2e-41 175.6 601 29.1
BolC7t44596H Brassica oleracea HOM05D004923 ORTHO05D005940 1.5e-41 175.3 636 37.9
Gohir.A08G212800 Gossypium hirsutum HOM05D004923 ORTHO05D005940 2.6e-41 174.5 653 36.6
QL03p003582 Quercus lobata HOM05D004923 ORTHO05D005940 1.3e-40 172.2 649 41.8
Ciclev10000602m.g Citrus clementina HOM05D004923 ORTHO05D005940 1.0e-37 162.5 638 31.3
Sabra05G0039600 Salix brachista HOM05D004923 ORTHO05D005940 2.4e-34 151.4 592 30.1
Hma1.2p1_0702F.1_g206060 Hydrangea macrophylla HOM05D004923 ORTHO05D005940 5.3e-34 150.2 624 27.9
Sabra13G0028900 Salix brachista HOM05D004923 ORTHO05D005940 1.2e-33 149.1 643 39.0
TWI56G0946 Tripterygium wilfordii HOM05D004923 ORTHO05D005940 1.5e-33 148.7 635 30.2
Gorai.004G244000 Gossypium raimondii HOM05D004923 ORTHO05D005940 4.5e-33 147.1 667 38.4
Gohir.D08G229800 Gossypium hirsutum HOM05D004923 ORTHO05D005940 1.3e-32 145.6 667 38.2
Actinidia19810 Actinidia chinensis HOM05D004923 ORTHO05D005940 9.4e-31 139.4 621 33.2
Duzib177G0588 Durio zibethinus HOM05D004923 ORTHO05D005940 9.4e-31 139.4 671 40.4
Potri.013G028600 Populus trichocarpa HOM05D004923 ORTHO05D005940 2.1e-30 138.3 643 36.5
CSS0000935 Camellia sinensis var. sinensis HOM05D004923 ORTHO05D005940 7.9e-30 136.3 627 29.3
Hma1.2p1_2453F.1_g322410 Hydrangea macrophylla HOM05D004923 ORTHO05D005940 1.0e-29 136.0 630 27.6
Thecc.05G297900 Theobroma cacao HOM05D004923 ORTHO05D005940 1.0e-29 136.0 670 36.6
Prupe.6G332700 Prunus persica HOM05D004923 ORTHO05D005940 3.0e-29 134.4 640 37.0
Sopen01g053000 Solanum pennellii HOM05D004923 ORTHO05D005940 6.7e-29 133.3 675 25.2
MSTRG.12109 Avicennia marina HOM05D004923 ORTHO05D005940 5.7e-28 130.2 649 25.3
Gohir.D11G270900 Gossypium hirsutum HOM05D004923 ORTHO05D005940 1.4e-26 125.6 669 40.4
SGA_v2.0_scaffold104G30165 Striga asiatica HOM05D004923 ORTHO05D005940 1.4e-26 125.6 636 25.0
Cc02_g32730 Coffea canephora HOM05D004923 ORTHO05D005940 7.0e-26 123.2 654 33.0
Gohir.A11G260600 Gossypium hirsutum HOM05D004923 ORTHO05D005940 3.5e-25 120.9 649 35.6
Gorai.007G291400 Gossypium raimondii HOM05D004923 ORTHO05D005940 1.3e-24 119.0 669 41.6
Sed0008414 Sechium edule HOM05D004923 ORTHO05D005940 5.0e-24 117.1 634 26.2
Manes.08G124600 Manihot esculenta HOM05D004923 ORTHO05D005940 6.5e-24 116.7 258 37.2
Sc06g0003440 Simmondsia chinensis HOM05D004923 ORTHO05D005940 1.1e-23 115.9 665 24.2
BcaC01g00704 Brassica carinata HOM05D004923 ORTHO05D032366 4.2e-23 114.0 190 46.3
BolC3t20618H Brassica oleracea HOM05D004923 ORTHO05D032366 4.2e-23 114.0 190 46.3
TAR362G1085 Trochodendron aralioides HOM05D004923 ORTHO05D005940 9.4e-23 112.8 761 28.8
CiPaw.08G168100 Carya illinoinensis HOM05D004923 ORTHO05D005940 2.7e-22 111.3 233 33.0
Solyc01g110960.4 Solanum lycopersicum HOM05D004923 ORTHO05D005940 6.1e-22 110.2 608 23.5
BraA06t26683Z Brassica rapa HOM05D004923 ORTHO05D005940 1.0e-21 109.4 643 31.6
MELO3C004316.2 Cucumis melo HOM05D004923 ORTHO05D005940 1.4e-21 109.0 640 25.6
GSVIVG01022015001 Vitis vinifera HOM05D004923 ORTHO05D005940 1.8e-21 108.6 637 31.1
PGSC0003DMG400001646 Solanum tuberosum HOM05D004923 ORTHO05D005940 6.7e-21 106.7 299 34.8
Dinv40234 Davidia involucrata HOM05D004923 ORTHO05D005940 1.1e-20 105.9 598 22.9
MD12G1227100 Malus domestica HOM05D004923 ORTHO05D005940 2.0e-20 105.1 214 37.9
arahy.Tifrunner.gnm1.ann1.96LETV Arachis hypogaea HOM05D004923 ORTHO05D005940 2.6e-20 104.8 622 27.8
Eucgr.B02029 Eucalyptus grandis HOM05D004923 ORTHO05D005940 4.4e-20 104.0 641 28.1
Rhsim05G0146200 Rhododendron simsii HOM05D004923 ORTHO05D005940 2.2e-19 101.7 625 33.1
ClCG02G016160 Citrullus lanatus HOM05D004923 ORTHO05D005940 6.3e-19 100.1 637 23.5
CsaV3_2G004820 Cucumis sativus L. HOM05D004923 ORTHO05D005940 1.1e-18 99.4 264 33.3
MD04G1212300 Malus domestica HOM05D004923 ORTHO05D005940 1.8e-18 98.6 255 34.1
RcHm_v2.0_Chr3g0453461 Rosa chinensis HOM05D004923 ORTHO05D005940 4.1e-18 97.4 636 38.1
Cpa.g.sc84.119 Carica papaya HOM05D004923 ORTHO05D005940 5.3e-18 97.1 504 29.0
COL.COLO4_13559 Corchorus olitorius HOM05D004923 ORTHO05D005940 4.5e-17 94.0 208 33.7
PGR083G0910 Punica granatum HOM05D004923 ORTHO05D005940 1.0e-16 92.8 593 29.0
Lalb_Chr02g0148481 Lupinus albus HOM05D004923 ORTHO05D005940 5.0e-16 90.5 599 22.2
Migut.A01112 Erythranthe guttata HOM05D004923 ORTHO05D005940 2.5e-15 88.2 649 32.4
Lj9P678T27 Lonicera japonica HOM05D004923 ORTHO05D005940 2.5e-15 88.2 228 31.1
CANSAT54G1324 Cannabis sativa HOM05D004923 ORTHO05D005940 4.2e-15 87.4 755 33.1
Atru.chr2.532 Acer truncatum HOM05D004923 ORTHO05D005940 9.4e-15 86.3 696 34.6
SalBow6G2889 Salvia bowleyana HOM05D004923 ORTHO05D005940 9.4e-15 86.3 648 24.4
FvH4_6g04961 Fragaria vesca HOM05D004923 ORTHO05D005940 8.0e-14 83.2 258 29.5
CAN.G1329.24 Capsicum annuum HOM05D004923 ORTHO05D005940 3.0e-13 81.3 260 28.8
Nn4g26097 Nelumbo nucifera HOM05D004923 ORTHO05D005940 3.0e-13 81.3 619 25.5
FAN02G0211 Fragaria x ananassa HOM05D004923 ORTHO05D005940 4.0e-13 80.9 636 33.2
MBI18_g16961_MAGBIO Magnolia biondii HOM05D004923 ORTHO05D005940 2.6e-12 78.2 665 25.4
PSO151G0007 Papaver somniferum HOM05D004923 ORTHO05D005940 9.7e-12 76.3 226 29.6
PSO151G0141 Papaver somniferum HOM05D004923 ORTHO05D005940 9.7e-12 76.3 226 29.6
Phvul.007G183300 Phaseolus vulgaris HOM05D004923 ORTHO05D005940 9.7e-12 76.3 225 27.6
Glyma.20G230700 Glycine max HOM05D004923 ORTHO05D005940 1.3e-11 75.9 222 28.8
FAN05G5260 Fragaria x ananassa HOM05D004923 ORTHO05D005940 2.2e-11 75.1 657 35.9
AUR62000899 Chenopodium quinoa HOM05D004923 ORTHO05D005940 2.8e-11 74.7 621 20.9
Peaxi162Scf00016g10236 Petunia axillaris HOM05D004923 ORTHO05D005940 2.8e-11 74.7 220 31.8
Atru.chr5.1952 Acer truncatum HOM05D000107 ORTHO05D000062 3.7e-11 74.3 118 40.7
FAN14G0846 Fragaria x ananassa HOM05D004923 ORTHO05D005940 6.3e-11 73.6 636 34.7
PSO170G6876 Papaver somniferum HOM05D004923 ORTHO05D005940 8.3e-11 73.2 147 38.1
FAN09G1938 Fragaria x ananassa HOM05D004923 ORTHO05D005940 1.4e-10 72.4 637 32.0
Glyma.10G157900 Glycine max HOM05D004923 ORTHO05D005940 1.4e-10 72.4 640 27.2
ECA246G1289 Erigeron canadensis HOM05D004923 ORTHO05D005940 1.8e-10 72.0 214 32.7
PSO151G0084 Papaver somniferum HOM05D004923 ORTHO05D005940 4.1e-10 70.9 228 31.6
VMungo0720G2495 Vigna mungo HOM05D004923 ORTHO05D005940 4.1e-10 70.9 102 40.2
AUR62005075 Chenopodium quinoa HOM05D004923 ORTHO05D005940 5.3e-10 70.5 616 21.4
HanXRQChr05g0158391 Helianthus annuus HOM05D004923 ORTHO05D005940 2.0e-09 68.6 646 23.7
Lj8C55T15 Lonicera japonica HOM05D004923 ORTHO05D005940 2.7e-09 68.2 258 29.1
Oeu019603.1 Olea europaea HOM05D004923 ORTHO05D005940 2.7e-09 68.2 235 31.1
Potri.005G040500 Populus trichocarpa HOM05D004923 ORTHO05D005940 2.7e-09 68.2 583 28.5
FAN05G2617 Fragaria x ananassa HOM05D004923 ORTHO05D005940 3.5e-09 67.8 657 32.6
Lj5g0013750 Lotus japonicus HOM05D004923 ORTHO05D005940 4.5e-09 67.4 190 27.4
PSO302G0039 Papaver somniferum HOM05D004923 ORTHO05D005940 5.9e-09 67.0 112 42.0
DCAR_029454 Daucus carota HOM05D004923 ORTHO05D005940 1.3e-08 65.9 623 39.8
Ah.04g159880 Amaranthus hybridus HOM05D004923 ORTHO05D005940 1.7e-08 65.5 630 28.9
CDE09G0746 Ceratophyllum demersum HOM05D056443 ORTHO05D005940 2.9e-08 64.7 106 39.6
Ah.04g159900 Amaranthus hybridus HOM05D004923 ORTHO05D005940 5.0e-08 63.9 162 30.9
Nitab4.5_0000003g0420 Nicotiana tabacum HOM05D004923 ORTHO05D005940 5.0e-08 63.9 299 27.8
HanXRQChr15g0493471 Helianthus annuus HOM05D004923 ORTHO05D005940 6.5e-08 63.5 605 30.2
TPR.G2744 Trifolium pratense HOM05D004923 ORTHO05D005940 8.5e-08 63.2 109 40.4
Medtr1g082215 Medicago truncatula HOM05D004923 ORTHO05D005940 1.1e-07 62.8 174 29.3
Ca_10079_v3 Cicer arietinum L. HOM05D004923 ORTHO05D005940 1.5e-07 62.4 163 29.4
Nn4g26098 Nelumbo nucifera HOM05D004923 ORTHO05D005940 1.5e-07 62.4 710 28.9
arahy.Tifrunner.gnm1.ann1.VPW6I2 Arachis hypogaea HOM05D004923 ORTHO05D005940 1.9e-07 62.0 607 27.7
Nitab4.5_0008768g0010 Nicotiana tabacum HOM05D004923 ORTHO05D005940 1.9e-07 62.0 195 31.8
Oeu020434.1 Olea europaea HOM05D004923 ORTHO05D005940 4.2e-07 60.8 644 25.9
Ah.04g159890 Amaranthus hybridus HOM05D004923 ORTHO05D005940 5.5e-07 60.5 211 28.4
Psat6g148400 Pisum sativum HOM05D004923 ORTHO05D005940 9.4e-07 59.7 157 31.2
COL.COLO4_23513 Corchorus olitorius HOM05D004923 ORTHO05D005940 1.6e-06 58.9 135 37.0
SHI18226 Sapria himalayana HOM05D004923 ORTHO05D005940 2.1e-06 58.5 226 27.4


User provided reference genes

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