Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s0432 Capsella rubella HOM05D006168 ORTHO05D007602 7.3e-64 247.3 146 100.0
AL3G15460 Arabidopsis lyrata HOM05D006168 ORTHO05D007602 3.5e-58 228.4 146 91.8
AT3G05070 Arabidopsis thaliana HOM05D006168 ORTHO05D007602 6.0e-58 227.6 146 93.8
CARHR079400 Cardamine hirsuta HOM05D006168 ORTHO05D007602 1.8e-54 216.1 147 81.6
Aa31LG5G15370 Aethionema arabicum HOM05D006168 ORTHO05D007602 7.6e-53 210.7 139 84.2
BolC3t16418H Brassica oleracea HOM05D006168 ORTHO05D007602 4.9e-52 208.0 143 79.7
Sp3g03900 Schrenkiella parvula HOM05D006168 ORTHO05D007602 1.4e-51 206.5 146 76.7
A05p42500 Brassica napus HOM05D006168 ORTHO05D007602 4.2e-51 204.9 149 83.9
BraA05t23002Z Brassica rapa HOM05D006168 ORTHO05D007602 4.2e-51 204.9 149 83.9
C05p62160 Brassica napus HOM05D006168 ORTHO05D007602 9.3e-51 203.8 149 83.2
BolC5t34874H Brassica oleracea HOM05D006168 ORTHO05D007602 9.3e-51 203.8 149 83.2
BraA03t12572Z Brassica rapa HOM05D006168 ORTHO05D007602 2.7e-50 202.2 141 78.0
Thhalv10021722m.g Eutrema salsugineum HOM05D006168 ORTHO05D007602 1.3e-49 199.9 139 79.1
BcaC05g29992 Brassica carinata HOM05D006168 ORTHO05D007602 8.2e-47 190.7 140 84.3
Manes.02G226600 Manihot esculenta HOM05D006168 ORTHO05D007602 7.4e-40 167.5 144 63.9
GSVIVG01024249001 Vitis vinifera HOM05D006168 ORTHO05D007602 3.7e-39 165.2 149 61.7
Duzib114G0883 Durio zibethinus HOM05D006168 ORTHO05D007602 4.1e-38 161.8 152 59.9
THA.LOC104818656 Tarenaya hassleriana HOM05D006168 ORTHO05D007602 5.3e-38 161.4 138 64.5
COL.COLO4_12167 Corchorus olitorius HOM05D006168 ORTHO05D007602 6.9e-38 161.0 152 60.5
Gohir.A05G294800 Gossypium hirsutum HOM05D006168 ORTHO05D007602 1.2e-37 160.2 152 59.2
Duzib128G1786 Durio zibethinus HOM05D006168 ORTHO05D007602 1.5e-37 159.8 152 58.6
Sabra04G0045100 Salix brachista HOM05D006168 ORTHO05D007602 2.0e-37 159.5 149 60.4
Gohir.D05G295400 Gossypium hirsutum HOM05D006168 ORTHO05D007602 2.6e-37 159.1 152 58.6
Potri.004G067300 Populus trichocarpa HOM05D006168 ORTHO05D007602 4.5e-37 158.3 149 58.4
CiPaw.16G075600 Carya illinoinensis HOM05D006168 ORTHO05D007602 7.7e-37 157.5 146 63.0
Thecc.10G078900 Theobroma cacao HOM05D006168 ORTHO05D007602 3.8e-36 155.2 152 59.2
CsaV3_1G007610 Cucumis sativus L. HOM05D006168 ORTHO05D007602 5.0e-36 154.8 148 60.8
Sed0019180 Sechium edule HOM05D006168 ORTHO05D007602 5.0e-36 154.8 153 58.2
ClCG01G014720 Citrullus lanatus HOM05D006168 ORTHO05D007602 6.5e-36 154.5 148 61.5
MELO3C002180.2 Cucumis melo HOM05D006168 ORTHO05D007602 1.4e-35 153.3 148 60.8
MBI06_g12548_MAGBIO Magnolia biondii HOM05D006168 ORTHO05D007602 1.9e-35 152.9 153 64.7
PGR083G1429 Punica granatum HOM05D006168 ORTHO05D007602 4.2e-35 151.8 158 57.6
TWI81G0790 Tripterygium wilfordii HOM05D006168 ORTHO05D007602 1.6e-34 149.8 145 60.7
CDE04G1298 Ceratophyllum demersum HOM05D006168 ORTHO05D007602 3.6e-34 148.7 154 59.1
AUR62028326 Chenopodium quinoa HOM05D006168 ORTHO05D007602 4.6e-34 148.3 151 57.0
Prupe.5G244900 Prunus persica HOM05D006168 ORTHO05D007602 4.6e-34 148.3 151 57.6
Hund08905 Selenicereus undatus HOM05D006168 ORTHO05D007602 6.1e-34 147.9 150 57.3
CANSAT35G1332 Cannabis sativa HOM05D006168 ORTHO05D007602 7.9e-34 147.5 139 57.6
Gorai.009G312100 Gossypium raimondii HOM05D006168 ORTHO05D007602 7.9e-34 147.5 133 60.9
Dinv03501 Davidia involucrata HOM05D006168 ORTHO05D007602 1.4e-33 146.7 155 53.5
Dinv03506 Davidia involucrata HOM05D006168 ORTHO05D007602 1.4e-33 146.7 155 53.5
Peaxi162Scf00643g00537 Petunia axillaris HOM05D006168 ORTHO05D007602 1.4e-33 146.7 139 59.0
Lj5g0014337 Lotus japonicus HOM05D006168 ORTHO05D007602 1.8e-33 146.4 156 54.5
HanXRQChr14g0428251 Helianthus annuus HOM05D006168 ORTHO05D007602 2.3e-33 146.0 139 56.8
Eucgr.H00657 Eucalyptus grandis HOM05D006168 ORTHO05D007602 3.0e-33 145.6 152 57.9
Lsat_1_v5_gn_2_6441 Lactuca sativa HOM05D006168 ORTHO05D007602 1.1e-32 143.7 145 54.5
MD14G1246600 Malus domestica HOM05D006168 ORTHO05D007602 1.9e-32 142.9 151 62.3
MD06G1240400 Malus domestica HOM05D006168 ORTHO05D007602 2.5e-32 142.5 151 61.6
Ah.14g084700 Amaranthus hybridus HOM05D006168 ORTHO05D007602 3.3e-32 142.1 155 55.5
AUR62025335 Chenopodium quinoa HOM05D006168 ORTHO05D007602 4.3e-32 141.7 136 61.0
PSO063G5228 Papaver somniferum HOM05D006168 ORTHO05D007602 4.3e-32 141.7 142 59.9
Atru.chr9.17 Acer truncatum HOM05D006168 ORTHO05D007602 1.7e-31 139.8 137 61.3
QL10p033704 Quercus lobata HOM05D006168 ORTHO05D007602 1.7e-31 139.8 135 62.2
TAR629G1867 Trochodendron aralioides HOM05D006168 ORTHO05D007602 2.2e-31 139.4 150 59.3
EL10Ac8g18962 Beta vulgaris HOM05D006168 ORTHO05D007602 2.8e-31 139.0 155 54.2
Cfa017805 Carpinus fangiana HOM05D006168 ORTHO05D007602 3.7e-31 138.7 149 56.4
CDE08G0644 Ceratophyllum demersum HOM05D006168 ORTHO05D007602 3.7e-31 138.7 156 56.4
ECA238G2000 Erigeron canadensis HOM05D006168 ORTHO05D007602 6.3e-31 137.9 144 53.5
VMungo0720G1915 Vigna mungo HOM05D006168 ORTHO05D007602 6.3e-31 137.9 144 55.6
Aqoxy2G03978 Aquilegia oxysepala HOM05D006168 ORTHO05D007602 8.2e-31 137.5 149 53.7
Glyma.20G216400 Glycine max HOM05D006168 ORTHO05D007602 1.1e-30 137.1 148 54.7
Nn3g18550 Nelumbo nucifera HOM05D006168 ORTHO05D007602 1.8e-30 136.3 153 52.9
Phvul.L006301 Phaseolus vulgaris HOM05D006168 ORTHO05D007602 2.4e-30 136.0 143 55.2
ATR0124G011 Amborella trichopoda HOM05D006168 ORTHO05D007602 9.1e-30 134.0 150 50.7
ECA238G0114 Erigeron canadensis HOM05D006168 ORTHO05D007602 9.1e-30 134.0 134 56.0
ECA238G1897 Erigeron canadensis HOM05D006168 ORTHO05D007602 9.1e-30 134.0 134 56.0
Glyma.10G174000 Glycine max HOM05D006168 ORTHO05D007602 1.2e-29 133.7 152 53.9
RcHm_v2.0_Chr7g0176961 Rosa chinensis HOM05D006168 ORTHO05D007602 2.0e-29 132.9 151 54.3
ECA238G2968 Erigeron canadensis HOM05D000092 ORTHO05D000042 3.4e-29 132.1 133 55.6
Medtr1g077570 Medicago truncatula HOM05D006168 ORTHO05D007602 3.4e-29 132.1 169 48.5
Solyc06g072170.2 Solanum lycopersicum HOM05D006168 ORTHO05D007602 3.4e-29 132.1 138 55.8
Sopen06g028470 Solanum pennellii HOM05D006168 ORTHO05D007602 3.4e-29 132.1 138 55.8
DCAR_011406 Daucus carota HOM05D006168 ORTHO05D007602 4.5e-29 131.7 141 55.3
Rhsim12G0137000 Rhododendron simsii HOM05D006168 ORTHO05D007602 4.5e-29 131.7 133 57.1
PGSC0003DMG400027059 Solanum tuberosum HOM05D006168 ORTHO05D007602 7.7e-29 131.0 138 55.1
Ca_09928_v3 Cicer arietinum L. HOM05D006168 ORTHO05D007602 1.7e-28 129.8 167 48.5
Ciclev10022597m.g Citrus clementina HOM05D006168 ORTHO05D007602 1.7e-28 129.8 159 51.6
FAN04G0186 Fragaria x ananassa HOM05D006168 ORTHO05D007602 1.7e-28 129.8 154 51.9
HPP92_020852 Vanilla planifolia HOM05D006168 ORTHO05D007602 2.2e-28 129.4 147 54.4
FvH4_5g18550 Fragaria vesca HOM05D006168 ORTHO05D007602 2.9e-28 129.0 155 51.6
FAN18G0639 Fragaria x ananassa HOM05D006168 ORTHO05D007602 2.9e-28 129.0 155 51.6
Cc02_g29290 Coffea canephora HOM05D006168 ORTHO05D007602 1.4e-27 126.7 168 47.6
Migut.D02066 Erythranthe guttata HOM05D006168 ORTHO05D007602 5.5e-27 124.8 154 51.3
Psat6g054520 Pisum sativum HOM05D006168 ORTHO05D007602 7.2e-27 124.4 165 46.7
Lalb_Chr21g0311691 Lupinus albus HOM05D006168 ORTHO05D007602 9.4e-27 124.0 144 52.1
CSS0046866 Camellia sinensis var. sinensis HOM05D006168 ORTHO05D007602 1.2e-26 123.6 96 63.5
Haze_18408 Corylus avellana HOM05D006168 ORTHO05D007602 1.2e-26 123.6 96 64.6
FAN08G3581 Fragaria x ananassa HOM05D006168 ORTHO05D007602 1.6e-26 123.2 154 48.7
SGA_v2.0_scaffold387G50509 Striga asiatica HOM05D006168 ORTHO05D007602 1.4e-25 120.2 159 47.8
CAN.G65.65 Capsicum annuum HOM05D006168 ORTHO05D007602 2.3e-25 119.4 92 64.1
MSTRG.4316 Avicennia marina HOM05D006168 ORTHO05D007602 3.0e-25 119.0 159 47.8
vmacro16399 Vaccinium macrocarpon HOM05D006168 ORTHO05D007602 5.1e-25 118.2 167 44.9
Oeu034422.1 Olea europaea HOM05D006168 ORTHO05D007602 1.5e-24 116.7 136 61.8
Zm00001eb228960 Zea mays HOM05D006168 ORTHO05D007602 3.3e-24 115.5 171 45.6
BcaB04g19282 Brassica carinata HOM05D006168 ORTHO05D007602 1.3e-23 113.6 83 77.1
Nitab4.5_0000477g0160 Nicotiana tabacum HOM05D006168 ORTHO05D007602 1.3e-23 113.6 100 71.0
SEGI_05677 Sequoiadendron giganteum HOM05D006168 ORTHO05D007602 1.3e-23 113.6 157 44.6
Sed0015845 Sechium edule HOM05D006168 ORTHO05D007602 8.2e-23 110.9 137 52.6
Nitab4.5_0002771g0020 Nicotiana tabacum HOM05D006168 ORTHO05D007602 3.1e-22 109.0 84 78.6
unitig_21.g20432 Utricularia gibba HOM05D006168 ORTHO05D007602 9.1e-22 107.5 147 48.3
RcHm_v2.0_Chr5g0006211 Rosa chinensis HOM05D006168 ORTHO05D007602 1.2e-21 107.1 151 46.4
Mapoly0133s0024 Marchantia polymorpha HOM05D006168 ORTHO05D007602 2.6e-21 105.9 133 49.6
Os06g0730800 Oryza sativa ssp. japonica HOM05D006168 ORTHO05D007602 5.9e-21 104.8 170 41.8
AagrBONN_evm.TU.Sc2ySwM_368.389 Anthoceros agrestis HOM05D006168 ORTHO05D007602 1.0e-20 104.0 133 49.6
arahy.Tifrunner.gnm1.ann1.52MA05 Arachis hypogaea HOM05D006168 ORTHO05D007602 1.0e-20 104.0 145 49.7
BcaC01g04336 Brassica carinata HOM05D006168 ORTHO05D007602 1.7e-20 103.2 103 61.2
Cre12.g518300 Chlamydomonas reinhardtii HOM05D006168 ORTHO05D007602 8.5e-20 100.9 132 50.0
Potri.017G154100 Populus trichocarpa HOM05D006168 ORTHO05D007602 1.9e-19 99.8 98 59.2
SalBow8G4549 Salvia bowleyana HOM05D006168 ORTHO05D007602 1.6e-18 96.7 140 45.7
Pp3c19_22150 Physcomitrium patens HOM05D006168 ORTHO05D007602 2.1e-18 96.3 142 44.4
A03p33970 Brassica napus HOM05D006168 ORTHO05D007602 2.7e-18 95.9 67 80.6
FAN25G2877 Fragaria x ananassa HOM05D006168 ORTHO05D007602 3.3e-16 89.0 150 41.3
SMO147G0110 Selaginella moellendorffii HOM05D006168 ORTHO05D007602 7.4e-16 87.8 141 44.7
FvH4_3g03920 Fragaria vesca HOM05D006168 ORTHO05D007602 1.3e-15 87.0 142 41.5
FAN16G2203 Fragaria x ananassa HOM05D006168 ORTHO05D007602 1.3e-15 87.0 148 41.2
FAN11G1802 Fragaria x ananassa HOM05D006168 ORTHO05D007602 1.7e-15 86.7 142 41.5
FAN21G2556 Fragaria x ananassa HOM05D006168 ORTHO05D007602 1.7e-15 86.7 150 41.3
CBR_g57849 Chara braunii HOM05D006168 ORTHO05D007602 4.8e-15 85.1 98 45.9
C03p41350 Brassica napus HOM05D006168 ORTHO05D007602 1.8e-14 83.2 114 53.5
Sc15g0000010 Simmondsia chinensis HOM05D006168 ORTHO05D007602 1.6e-13 80.1 87 54.0
TPR.G8871 Trifolium pratense HOM05D006168 ORTHO05D007602 2.9e-12 75.9 47 76.6
BcaB04g19283 Brassica carinata HOM05D006168 ORTHO05D007602 1.1e-11 73.9 65 67.7
TPR.G35595 Trifolium pratense HOM05D006168 ORTHO05D007602 4.2e-11 72.0 94 47.9
FAN13G0455 Fragaria x ananassa HOM05D006168 ORTHO05D007602 1.2e-10 70.5 97 46.4
arahy.Tifrunner.gnm1.ann1.S1M3RU Arachis hypogaea HOM05D006168 ORTHO05D007602 6.1e-10 68.2 120 40.0
MCO12G027 Micromonas commoda HOM05D006168 ORTHO05D007602 2.0e-08 63.2 127 37.8
BolC1t02697H Brassica oleracea HOM05D004241 ORTHO05D018769 1.1e-06 57.4 60 65.0


User provided reference genes

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