Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s0429 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 2338.1 1195 100.0
AL3G15430 Arabidopsis lyrata HOM05D004384 ORTHO05D005797 0.0e+00 2127.8 1195 90.8
AT3G05040 Arabidopsis thaliana HOM05D004384 ORTHO05D005797 0.0e+00 2080.8 1195 88.9
Thhalv10022131m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 2021.9 1179 87.8
Aa31LG11G8890 Aethionema arabicum HOM05D004384 ORTHO05D005797 0.0e+00 1880.1 1184 80.0
Thhalv10003536m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 1856.6 1188 79.0
A06p37710 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 1847.8 1184 78.6
BolC7t44588H Brassica oleracea HOM05D004384 ORTHO05D005797 0.0e+00 1845.9 1185 78.8
C07p40520 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 1843.6 1185 78.8
Sp3g03870 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 1842.0 1121 84.7
BraA06t26690Z Brassica rapa HOM05D004384 ORTHO05D005797 0.0e+00 1840.9 1184 78.5
Sp2g20420 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 1839.7 1184 78.9
CARHR185780 Cardamine hirsuta HOM05D004384 ORTHO05D005797 0.0e+00 1836.6 1183 78.4
THA.LOC104821698 Tarenaya hassleriana HOM05D004384 ORTHO05D005797 0.0e+00 1827.4 1188 77.6
Carub.0006s2534 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 1807.7 1184 77.4
Gohir.A13G171600 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1656.3 1185 70.7
Cpa.g.sc117.32 Carica papaya HOM05D004384 ORTHO05D005797 0.0e+00 1647.1 1188 70.5
Duzib177G1205 Durio zibethinus HOM05D004384 ORTHO05D005797 0.0e+00 1634.8 1188 70.2
Thecc.05G292400 Theobroma cacao HOM05D004384 ORTHO05D005797 0.0e+00 1622.4 1187 69.8
Dinv04274 Davidia involucrata HOM05D004384 ORTHO05D005797 0.0e+00 1618.2 1192 69.0
Manes.09G159100 Manihot esculenta HOM05D004384 ORTHO05D005797 0.0e+00 1609.7 1189 68.9
Nn3g21301 Nelumbo nucifera HOM05D004384 ORTHO05D005797 0.0e+00 1594.7 1191 67.8
CiPaw.07G010400 Carya illinoinensis HOM05D004384 ORTHO05D005797 0.0e+00 1590.9 1193 67.6
BcaNung04267 Brassica carinata HOM05D004384 ORTHO05D005797 0.0e+00 1586.2 1191 71.0
Potri.013G032100 Populus trichocarpa HOM05D004384 ORTHO05D005797 0.0e+00 1581.6 1184 67.7
Gorai.013G122800 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1579.7 1189 67.5
Gorai.013G202700 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1579.3 1185 68.4
Prupe.6G336100 Prunus persica HOM05D004384 ORTHO05D005797 0.0e+00 1577.4 1191 67.6
Cfa006495 Carpinus fangiana HOM05D004384 ORTHO05D005797 0.0e+00 1574.3 1193 67.9
GSVIVG01021908001 Vitis vinifera HOM05D004384 ORTHO05D005797 0.0e+00 1570.8 1188 68.0
MD04G1216400 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1568.9 1194 67.9
QL03p001130 Quercus lobata HOM05D004384 ORTHO05D005797 0.0e+00 1563.5 1193 67.8
CANSAT54G2523 Cannabis sativa HOM05D004384 ORTHO05D005797 0.0e+00 1561.6 1191 68.3
Gohir.D13G109200 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1555.0 1179 66.8
Actinidia05750 Actinidia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1554.7 1189 67.0
TWI56G1253 Tripterygium wilfordii HOM05D004384 ORTHO05D005797 0.0e+00 1547.7 1192 66.3
MD12G1232900 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1547.3 1190 67.0
PGR004G0471 Punica granatum HOM05D004384 ORTHO05D005797 0.0e+00 1545.0 1192 66.4
Sc06g0003540 Simmondsia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1544.3 1192 65.3
Hund07007 Selenicereus undatus HOM05D004384 ORTHO05D005797 0.0e+00 1533.1 1184 65.3
RcHm_v2.0_Chr3g0452661 Rosa chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1531.5 1192 66.4
Gohir.D13G177400 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1527.7 1185 66.8
EL10Ac4g09231 Beta vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1520.0 1172 66.1
Ciclev10000072m.g Citrus clementina HOM05D004384 ORTHO05D005797 0.0e+00 1520.0 1194 65.2
Eucgr.H04418 Eucalyptus grandis HOM05D004384 ORTHO05D005797 0.0e+00 1519.6 1191 65.7
CSS0010917 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 0.0e+00 1515.7 1188 66.4
Sabra13G0030800 Salix brachista HOM05D004384 ORTHO05D005797 0.0e+00 1509.6 1159 65.1
FAN14G1587 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1509.2 1188 65.4
TAR362G1140 Trochodendron aralioides HOM05D004384 ORTHO05D005797 0.0e+00 1509.2 1157 67.1
FvH4_6g04110 Fragaria vesca HOM05D004384 ORTHO05D005797 0.0e+00 1508.8 1188 65.4
CARHR079360 Cardamine hirsuta HOM05D004384 ORTHO05D005797 0.0e+00 1508.4 887 87.0
Rhsim10G0110700 Rhododendron simsii HOM05D004384 ORTHO05D005797 0.0e+00 1506.1 1193 64.9
FAN09G2428 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1504.2 1181 65.5
FAN05G3638 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1501.9 1181 65.2
FAN09G2922 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1496.1 1181 65.2
FAN02G3203 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1495.7 1185 65.1
Nitab4.5_0000245g0070 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1487.6 1178 65.1
FAN05G1088 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1486.9 1191 64.4
Lalb_Chr04g0261021 Lupinus albus HOM05D004384 ORTHO05D005797 0.0e+00 1483.8 1180 64.5
Solyc01g098170.3 Solanum lycopersicum HOM05D004384 ORTHO05D005797 0.0e+00 1483.8 1184 64.7
Glyma.03G243400 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1483.4 1210 63.8
Glyma.19G240700 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1481.5 1195 64.3
Cc02_g32190 Coffea canephora HOM05D004384 ORTHO05D005797 0.0e+00 1479.2 1190 64.1
Peaxi162Scf00225g00421 Petunia axillaris HOM05D004384 ORTHO05D005797 0.0e+00 1473.4 1180 64.3
CAN.G134.202 Capsicum annuum HOM05D004384 ORTHO05D005797 0.0e+00 1469.9 1188 64.1
DCAR_022275 Daucus carota HOM05D004384 ORTHO05D005797 0.0e+00 1469.9 1192 63.3
Lj1g0011638 Lotus japonicus HOM05D004384 ORTHO05D005797 0.0e+00 1464.5 1195 63.5
AUR62005028 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1463.4 1192 62.1
VMungo0540G2235 Vigna mungo HOM05D004384 ORTHO05D005797 0.0e+00 1451.8 1187 62.9
Psat3g008440 Pisum sativum HOM05D004384 ORTHO05D005797 0.0e+00 1449.1 1191 62.9
CsaV3_2G004460 Cucumis sativus L. HOM05D004384 ORTHO05D005797 0.0e+00 1448.3 1188 62.8
Ah.06g192860 Amaranthus hybridus HOM05D004384 ORTHO05D005797 0.0e+00 1444.5 1190 62.7
Aqoxy2G03095 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1442.2 1190 61.8
MSTRG.20437 Avicennia marina HOM05D004384 ORTHO05D005797 0.0e+00 1439.1 1193 61.5
ClCG02G016280 Citrullus lanatus HOM05D004384 ORTHO05D005797 0.0e+00 1437.9 1196 62.3
TPR.G6955 Trifolium pratense HOM05D004384 ORTHO05D005797 0.0e+00 1433.3 1193 62.1
Ca_09392_v3 Cicer arietinum L. HOM05D004384 ORTHO05D005797 0.0e+00 1427.5 1153 63.7
Sed0012875 Sechium edule HOM05D004384 ORTHO05D005797 0.0e+00 1426.0 1181 61.8
MELO3C004347.2 Cucumis melo HOM05D004384 ORTHO05D005797 0.0e+00 1424.5 1188 62.4
PSO170G1333 Papaver somniferum HOM05D004384 ORTHO05D005797 0.0e+00 1422.1 1190 61.0
Medtr7g114260 Medicago truncatula HOM05D004384 ORTHO05D005797 0.0e+00 1414.1 1190 61.9
Lsat_1_v5_gn_2_64920 Lactuca sativa HOM05D004384 ORTHO05D005797 0.0e+00 1412.5 1187 61.1
SalBow8G4829 Salvia bowleyana HOM05D004384 ORTHO05D005797 0.0e+00 1412.5 1186 61.0
COL.COLO4_13624 Corchorus olitorius HOM05D004384 ORTHO05D005797 0.0e+00 1410.2 1188 62.5
Migut.B01068 Erythranthe guttata HOM05D004384 ORTHO05D005797 0.0e+00 1404.4 1190 61.0
arahy.Tifrunner.gnm1.ann1.KAQB8D Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1393.6 1120 63.3
ECA238G0831 Erigeron canadensis HOM05D004384 ORTHO05D005797 0.0e+00 1389.0 1186 60.2
SGA_v2.0_scaffold36G14404 Striga asiatica HOM05D004384 ORTHO05D005797 0.0e+00 1388.6 1205 60.3
HanXRQChr14g0446631 Helianthus annuus HOM05D004384 ORTHO05D005797 0.0e+00 1385.9 1190 60.3
Nitab4.5_0010351g0010 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1371.3 1181 61.6
Oeu053262.1 Olea europaea HOM05D004384 ORTHO05D005797 0.0e+00 1340.5 1246 56.9
arahy.Tifrunner.gnm1.ann1.RD3H93 Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1324.3 1192 58.7
AUR62000939 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1310.4 1122 59.8
CDE01G0361 Ceratophyllum demersum HOM05D004384 ORTHO05D005797 0.0e+00 1306.6 1182 58.0
Lj7A481G46 Lonicera japonica HOM05D004384 ORTHO05D005797 0.0e+00 1278.8 985 66.3
Zm00001eb341370 Zea mays HOM05D004384 ORTHO05D005797 0.0e+00 1270.8 1181 55.8
Phvul.006G097400 Phaseolus vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1253.4 1016 63.2
vmacro05244 Vaccinium macrocarpon HOM05D004384 ORTHO05D005797 0.0e+00 1252.7 1309 53.4
ATR0618G249 Amborella trichopoda HOM05D004384 ORTHO05D005797 0.0e+00 1250.7 1164 55.5
Os01g0363900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 0.0e+00 1239.6 1189 54.1
unitig_0.g2222 Utricularia gibba HOM05D004384 ORTHO05D005797 0.0e+00 1215.7 1206 53.2
Aqoxy179s001 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1122.8 1041 57.9
BcaC05g29989 Brassica carinata HOM05D004384 ORTHO05D005797 0.0e+00 1094.7 986 63.2
Atru.chr2.639 Acer truncatum HOM05D004384 ORTHO05D005797 2.7e-305 1052.4 963 57.6
Sopen01g041740 Solanum pennellii HOM05D004384 ORTHO05D005797 2.9e-299 1032.3 816 65.1
Haze_04294 Corylus avellana HOM05D004384 ORTHO05D005797 1.2e-292 1010.4 822 65.2
BolC1t05723H Brassica oleracea HOM05D004384 ORTHO05D005797 9.0e-277 957.6 1188 47.9
Medtr1g063040 Medicago truncatula HOM05D004384 ORTHO05D005797 1.5e-271 940.3 1150 47.5
BNapus_Darmor_BZH_scaffold_78p01040 Brassica napus HOM05D004384 ORTHO05D005797 6.1e-265 918.3 1157 47.1
BraA01t04501Z Brassica rapa HOM05D004384 ORTHO05D005797 4.8e-262 908.7 1157 47.0
BcaB04g21343 Brassica carinata HOM05D004384 ORTHO05D005797 5.0e-259 898.7 1173 46.5
Pp3c7_3740 Physcomitrium patens HOM05D004384 ORTHO05D005797 1.5e-252 877.1 1209 41.9
Pp3c11_26800 Physcomitrium patens HOM05D004384 ORTHO05D005797 1.6e-249 867.1 1198 40.8
Mapoly0015s0189 Marchantia polymorpha HOM05D004384 ORTHO05D005797 5.3e-245 852.0 1211 41.5
Sopen00g006580 Solanum pennellii HOM05D004384 ORTHO05D005797 1.4e-232 810.8 649 64.4
SMO145G0253 Selaginella moellendorffii HOM05D004384 ORTHO05D005797 3.7e-230 802.7 1181 38.8
SEGI_22518 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 2.4e-205 720.3 794 50.5
AagrBONN_evm.TU.Sc2ySwM_340.422 Anthoceros agrestis HOM05D004384 ORTHO05D005797 1.4e-200 704.5 1212 36.8
Actinidia30910 Actinidia chinensis HOM05D004384 ORTHO05D005797 4.3e-186 656.4 600 59.5
HPP92_011308 Vanilla planifolia HOM05D004384 ORTHO05D005797 5.8e-183 646.0 552 60.1
HPP92_011287 Vanilla planifolia HOM05D004384 ORTHO05D005797 7.9e-172 609.0 637 50.1
HPP92_011286 Vanilla planifolia HOM05D004384 ORTHO05D005797 6.2e-169 599.4 521 59.1
Gohir.A13G106433 Gossypium hirsutum HOM05D004384 ORTHO05D005797 5.5e-157 559.7 416 68.0
Haze_04301 Corylus avellana HOM05D004384 ORTHO05D005797 6.3e-145 519.6 471 59.0
HPP92_011309 Vanilla planifolia HOM05D004384 ORTHO05D005797 2.3e-131 474.6 501 49.9
PGSC0003DMG400022491 Solanum tuberosum HOM05D004384 ORTHO05D005797 3.8e-102 377.5 306 63.4
Sopen01g041750 Solanum pennellii HOM05D004384 ORTHO05D005797 4.0e-91 340.9 282 63.5
Sopen00g006590 Solanum pennellii HOM05D004384 ORTHO05D005797 5.4e-72 277.3 210 66.2
SEGI_23591 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 5.6e-69 267.3 267 50.2
Glyma.02G183700 Glycine max HOM05D004384 ORTHO05D005797 8.1e-68 263.5 210 65.7
Lj7C481T10 Lonicera japonica HOM05D004384 ORTHO05D005797 2.9e-57 228.4 172 70.9
arahy.Tifrunner.gnm1.ann1.2MX35J Arachis hypogaea HOM05D000319 ORTHO05D002646 3.0e-54 218.4 213 56.8
Os11g0518900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 1.4e-51 209.5 433 32.8
Os11g0513900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 2.5e-48 198.7 509 29.9
MCO07G327 Micromonas commoda HOM05D004384 ORTHO05D005797 1.0e-38 166.8 409 28.4
Cre10.g420400 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 1.5e-37 162.9 1271 20.8
CSS0044605 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 2.0e-34 152.5 109 68.8
Ciclev10003957m.g Citrus clementina HOM05D004384 ORTHO05D005797 8.5e-25 120.6 96 61.5
BcaC03g17773 Brassica carinata HOM05D004384 ORTHO05D005797 5.0e-17 94.7 81 65.4
MBI18_g14725_MAGBIO Magnolia biondii HOM05D004384 ORTHO05D005797 9.4e-16 90.5 75 58.7
Os11g0517800 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D299849 2.7e-15 89.0 351 24.8
BraA05t22999Z Brassica rapa HOM05D004384 ORTHO05D005797 3.6e-15 88.6 75 61.3
A05p42530 Brassica napus HOM05D004384 ORTHO05D005797 1.0e-14 87.0 75 60.0
C02p57890 Brassica napus HOM05D004384 ORTHO05D005797 2.3e-14 85.9 63 74.6
BcaNung06429 Brassica carinata HOM05D004384 ORTHO05D005797 4.4e-13 81.6 79 54.4
Lsat_1_v5_gn_5_147500 Lactuca sativa HOM05D001610 ORTHO05D005797 7.4e-13 80.9 75 57.3
BolC2t11857H Brassica oleracea HOM05D004384 ORTHO05D005797 9.7e-13 80.5 72 66.7
BraA01t04627Z Brassica rapa HOM05D004384 ORTHO05D005797 4.1e-11 75.1 69 55.1
CAN.G124.14 Capsicum annuum HOM05D004384 ORTHO05D022156 7.0e-11 74.3 50 76.0
CAN.G37.9 Capsicum annuum HOM05D001673 ORTHO05D013418 7.0e-11 74.3 50 76.0
Os11g0519500 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D300109 2.2e-09 69.3 316 24.1
Thhalv10011164m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 2.9e-09 68.9 72 48.6
HPP92_011310 Vanilla planifolia HOM05D004384 ORTHO05D005797 6.5e-09 67.8 71 49.3
FvH4_6g04501 Fragaria vesca HOM05D004384 ORTHO05D005797 1.5e-08 66.6 88 45.5
Cre10.g420250 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 8.8e-06 57.4 192 26.6


User provided reference genes

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