Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s0428 Capsella rubella HOM05D004543 ORTHO05D006042 0.0e+00 1481.8 761 100.0
AL3G15410 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 0.0e+00 1305.8 761 87.9
AL7G28340 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 0.0e+00 1265.0 761 86.2
AT4G24840 Arabidopsis thaliana HOM05D004543 ORTHO05D006042 0.0e+00 1250.0 761 84.6
Carub.0007s1621 Capsella rubella HOM05D004543 ORTHO05D006042 0.0e+00 1249.2 761 84.5
Thhalv10024490m.g Eutrema salsugineum HOM05D004543 ORTHO05D006042 0.0e+00 1242.3 762 83.6
Sp7g22830 Schrenkiella parvula HOM05D004543 ORTHO05D006042 0.0e+00 1228.0 761 82.4
BcaC06g32853 Brassica carinata HOM05D004543 ORTHO05D006042 0.0e+00 1212.2 761 81.7
BolC7t45874H Brassica oleracea HOM05D004543 ORTHO05D006042 0.0e+00 1212.2 761 81.7
C07p53840 Brassica napus HOM05D004543 ORTHO05D006042 0.0e+00 1207.2 761 81.5
A03p55600 Brassica napus HOM05D004543 ORTHO05D006042 0.0e+00 1205.3 761 81.3
BraA03t14627Z Brassica rapa HOM05D004543 ORTHO05D006042 0.0e+00 1205.3 761 81.3
C01p20140 Brassica napus HOM05D004543 ORTHO05D006042 0.0e+00 1203.7 761 81.1
BolC1t01943H Brassica oleracea HOM05D004543 ORTHO05D006042 0.0e+00 1203.7 761 81.1
Aa31LG7G11000 Aethionema arabicum HOM05D004543 ORTHO05D006042 0.0e+00 1198.0 786 79.1
A01p16150 Brassica napus HOM05D004543 ORTHO05D006042 0.0e+00 1197.6 761 80.9
BraA01t01551Z Brassica rapa HOM05D004543 ORTHO05D006042 0.0e+00 1197.6 761 80.9
Sp6g25960 Schrenkiella parvula HOM05D004543 ORTHO05D006042 0.0e+00 1158.7 763 79.4
THA.LOC104811593 Tarenaya hassleriana HOM05D004543 ORTHO05D006042 0.0e+00 1124.4 748 76.1
BcaNung06004 Brassica carinata HOM05D004543 ORTHO05D006042 0.0e+00 1117.8 707 81.3
A03p08790 Brassica napus HOM05D004543 ORTHO05D006042 0.0e+00 1088.2 762 75.3
BolC3t13508H Brassica oleracea HOM05D004543 ORTHO05D006042 1.6e-311 1072.4 762 74.8
C03p10280 Brassica napus HOM05D004543 ORTHO05D006042 6.2e-311 1070.5 763 74.7
BraA03t10204Z Brassica rapa HOM05D004543 ORTHO05D006042 6.2e-311 1070.5 763 74.7
BcaB01g05188 Brassica carinata HOM05D004543 ORTHO05D006042 1.2e-303 1046.2 727 75.8
CiPaw.11G008900 Carya illinoinensis HOM05D004543 ORTHO05D006042 6.3e-300 1033.9 751 70.3
Cfa018837 Carpinus fangiana HOM05D004543 ORTHO05D006042 8.2e-300 1033.5 753 70.1
Haze_07231 Corylus avellana HOM05D004543 ORTHO05D006042 5.9e-298 1027.3 753 69.7
Thecc.06G039500 Theobroma cacao HOM05D004543 ORTHO05D006042 2.2e-297 1025.4 754 68.7
Ciclev10018979m.g Citrus clementina HOM05D004543 ORTHO05D006042 7.2e-296 1020.4 758 68.3
QL10p004063 Quercus lobata HOM05D004543 ORTHO05D006042 1.2e-295 1019.6 778 68.0
COL.COLO4_26675 Corchorus olitorius HOM05D004543 ORTHO05D006042 2.1e-295 1018.8 751 68.3
Manes.06G118300 Manihot esculenta HOM05D004543 ORTHO05D006042 3.6e-295 1018.1 754 68.3
Gohir.A11G168800 Gossypium hirsutum HOM05D004543 ORTHO05D006042 6.1e-295 1017.3 752 68.5
Gorai.007G187600 Gossypium raimondii HOM05D004543 ORTHO05D006042 6.1e-295 1017.3 752 68.2
Gohir.D11G175000 Gossypium hirsutum HOM05D004543 ORTHO05D006042 8.0e-295 1016.9 752 68.4
Duzib138G1537 Durio zibethinus HOM05D004543 ORTHO05D006042 1.4e-294 1016.1 753 68.7
Lalb_Chr07g0183361 Lupinus albus HOM05D004543 ORTHO05D006042 1.3e-292 1009.6 756 67.2
Phvul.003G210200 Phaseolus vulgaris HOM05D004543 ORTHO05D006042 2.4e-291 1005.4 756 66.7
Actinidia25587 Actinidia chinensis HOM05D004543 ORTHO05D006042 9.1e-291 1003.4 748 67.9
arahy.Tifrunner.gnm1.ann1.28ZGNX Arachis hypogaea HOM05D004543 ORTHO05D006042 2.0e-290 1002.3 753 67.6
Ca_00911_v3 Cicer arietinum L. HOM05D004543 ORTHO05D006042 2.7e-290 1001.9 747 67.3
VMungo1215G3183 Vigna mungo HOM05D004543 ORTHO05D006042 4.5e-290 1001.1 756 66.5
arahy.Tifrunner.gnm1.ann1.9QW7J0 Arachis hypogaea HOM05D004543 ORTHO05D006042 1.3e-289 999.6 753 67.6
Glyma.17G129100 Glycine max HOM05D004543 ORTHO05D006042 7.2e-288 993.8 756 66.4
Atru.chr9.1076 Acer truncatum HOM05D004543 ORTHO05D006042 1.6e-287 992.6 758 66.9
Dinv11159 Davidia involucrata HOM05D004543 ORTHO05D006042 3.6e-287 991.5 753 67.3
CSS0037462 Camellia sinensis var. sinensis HOM05D004543 ORTHO05D006042 6.8e-286 987.3 753 67.9
GSVIVG01008523001 Vitis vinifera HOM05D004543 ORTHO05D006042 1.4e-283 979.5 747 66.4
Glyma.05G047300 Glycine max HOM05D004543 ORTHO05D006042 5.4e-283 977.6 756 65.2
TWI23G0493 Tripterygium wilfordii HOM05D004543 ORTHO05D006042 5.4e-283 977.6 762 65.6
vmacro19212 Vaccinium macrocarpon HOM05D004543 ORTHO05D006042 7.0e-283 977.2 753 66.1
FAN13G0766 Fragaria x ananassa HOM05D004543 ORTHO05D006042 2.0e-282 975.7 742 66.4
RcHm_v2.0_Chr7g0190411 Rosa chinensis HOM05D004543 ORTHO05D006042 2.0e-282 975.7 748 65.4
Actinidia15838 Actinidia chinensis HOM05D004543 ORTHO05D006042 2.7e-282 975.3 763 65.4
FvH4_5g08050 Fragaria vesca HOM05D004543 ORTHO05D006042 7.7e-282 973.8 765 65.4
PGR083G0162 Punica granatum HOM05D004543 ORTHO05D006042 7.7e-282 973.8 761 65.0
Sabra15G0115500 Salix brachista HOM05D004543 ORTHO05D006042 7.7e-282 973.8 749 66.1
Eucgr.B00121 Eucalyptus grandis HOM05D004543 ORTHO05D006042 5.0e-281 971.1 747 66.9
FAN18G3295 Fragaria x ananassa HOM05D004543 ORTHO05D006042 5.0e-281 971.1 765 65.2
ClCG11G005570 Citrullus lanatus HOM05D004543 ORTHO05D006042 1.5e-280 969.5 746 65.8
Potri.015G094000 Populus trichocarpa HOM05D004543 ORTHO05D006042 1.5e-280 969.5 751 65.9
MD06G1143400 Malus domestica HOM05D004543 ORTHO05D006042 1.9e-280 969.1 753 65.7
Potri.012G096100 Populus trichocarpa HOM05D004543 ORTHO05D006042 4.2e-280 968.0 747 65.9
CsaV3_6G002430 Cucumis sativus L. HOM05D004543 ORTHO05D006042 1.2e-279 966.5 744 65.6
Cpa.g.sc13.138 Carica papaya HOM05D004543 ORTHO05D006042 2.1e-279 965.7 758 66.9
FAN04G2916 Fragaria x ananassa HOM05D004543 ORTHO05D006042 3.6e-279 964.9 752 65.7
Medtr4g103610 Medicago truncatula HOM05D004543 ORTHO05D006042 8.0e-279 963.8 745 65.2
Sed0026192 Sechium edule HOM05D004543 ORTHO05D006042 1.4e-278 963.0 744 65.3
Lj9C477T19 Lonicera japonica HOM05D004543 ORTHO05D006042 3.0e-278 961.8 790 63.2
Nn3g16500 Nelumbo nucifera HOM05D004543 ORTHO05D006042 4.0e-278 961.4 751 65.2
Prupe.5G152600 Prunus persica HOM05D004543 ORTHO05D006042 4.0e-278 961.4 754 65.3
CANSAT80G2145 Cannabis sativa HOM05D004543 ORTHO05D006042 1.2e-277 959.9 747 64.4
Lj4g0012876 Lotus japonicus HOM05D004543 ORTHO05D006042 2.0e-277 959.1 756 64.9
MD14G1158600 Malus domestica HOM05D004543 ORTHO05D006042 8.3e-276 953.7 756 64.3
Sed0023388 Sechium edule HOM05D004543 ORTHO05D006042 8.3e-276 953.7 744 64.9
MELO3C025044.2 Cucumis melo HOM05D004543 ORTHO05D006042 5.9e-274 947.6 744 64.4
Oeu056011.1 Olea europaea HOM05D004543 ORTHO05D006042 2.5e-272 942.2 755 63.7
BcaNung04937 Brassica carinata HOM05D004543 ORTHO05D006042 3.3e-272 941.8 734 70.6
Hund02429 Selenicereus undatus HOM05D004543 ORTHO05D006042 3.3e-272 941.8 755 64.2
Migut.I00508 Erythranthe guttata HOM05D004543 ORTHO05D006042 4.7e-271 937.9 750 64.3
Cc07_g18860 Coffea canephora HOM05D004543 ORTHO05D006042 6.1e-271 937.6 746 63.5
Hma1.2p1_1271F.1_g271760 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 4.6e-266 921.4 710 65.8
PSO782G5417 Papaver somniferum HOM05D004543 ORTHO05D006042 1.7e-265 919.5 744 62.2
EL10As4g23416 Beta vulgaris HOM05D004543 ORTHO05D006042 3.9e-265 918.3 759 63.5
Aqoxy5G03415 Aquilegia oxysepala HOM05D004543 ORTHO05D006042 1.1e-264 916.8 753 62.2
Lsat_1_v5_gn_4_76761 Lactuca sativa HOM05D004543 ORTHO05D006042 1.5e-264 916.4 759 61.5
PSO063G5574 Papaver somniferum HOM05D004543 ORTHO05D006042 2.1e-263 912.5 744 61.8
AUR62029871 Chenopodium quinoa HOM05D004543 ORTHO05D006042 1.8e-262 909.4 750 62.1
Sopen08g002610 Solanum pennellii HOM05D004543 ORTHO05D006042 1.8e-262 909.4 758 62.8
PGSC0003DMG400026304 Solanum tuberosum HOM05D004543 ORTHO05D006042 3.1e-262 908.7 756 63.1
Nitab4.5_0001187g0130 Nicotiana tabacum HOM05D004543 ORTHO05D006042 6.8e-262 907.5 753 62.9
Nitab4.5_0002497g0060 Nicotiana tabacum HOM05D004543 ORTHO05D006042 8.3e-260 900.6 753 62.5
unitig_8.g3033 Utricularia gibba HOM05D004543 ORTHO05D006042 8.6e-257 890.6 758 60.6
ECA232G1394 Erigeron canadensis HOM05D004543 ORTHO05D006042 3.3e-256 888.6 749 60.5
HanXRQChr09g0273071 Helianthus annuus HOM05D004543 ORTHO05D006042 3.3e-256 888.6 762 61.3
CARHR232260 Cardamine hirsuta HOM05D004543 ORTHO05D006042 2.1e-255 885.9 535 84.3
SGA_v2.0_scaffold161G37784 Striga asiatica HOM05D004543 ORTHO05D006042 1.1e-254 883.6 753 61.4
Migut.I00509 Erythranthe guttata HOM05D004543 ORTHO05D006042 5.2e-254 881.3 743 62.0
Peaxi162Scf00045g00192 Petunia axillaris HOM05D004543 ORTHO05D006042 3.0e-249 865.5 754 61.1
CAN.G906.5 Capsicum annuum HOM05D004543 ORTHO05D006042 1.1e-248 863.6 747 60.9
TAR622G0482 Trochodendron aralioides HOM05D004543 ORTHO05D006042 2.4e-246 855.9 673 64.9
FAN08G2446 Fragaria x ananassa HOM05D004543 ORTHO05D006042 4.0e-246 855.1 765 59.2
Psat0s3466g0040 Pisum sativum HOM05D004543 ORTHO05D006042 2.3e-241 839.3 625 67.5
ATR0561G088 Amborella trichopoda HOM05D004543 ORTHO05D006042 7.1e-235 817.8 747 57.2
Os03g0849600 Oryza sativa ssp. japonica HOM05D004543 ORTHO05D006042 7.8e-234 814.3 745 56.6
Zm00001eb210790 Zea mays HOM05D004543 ORTHO05D006042 3.0e-233 812.4 745 57.3
CDE05G1945 Ceratophyllum demersum HOM05D004543 ORTHO05D006042 1.1e-232 810.4 746 57.4
SHI28598 Sapria himalayana HOM05D004543 ORTHO05D006042 1.5e-232 810.1 816 53.7
SEGI_19802 Sequoiadendron giganteum HOM05D004543 ORTHO05D006042 4.2e-227 792.0 762 54.5
AUR62025843 Chenopodium quinoa HOM05D004543 ORTHO05D006042 9.6e-224 780.8 656 60.4
TPR.G19235 Trifolium pratense HOM05D004543 ORTHO05D006042 7.6e-213 744.6 640 60.8
Mapoly0003s0046 Marchantia polymorpha HOM05D004543 ORTHO05D006042 9.0e-206 721.1 747 51.7
Dinv04875 Davidia involucrata HOM05D004543 ORTHO05D006042 3.2e-203 712.6 528 68.2
Sc04g0000730 Simmondsia chinensis HOM05D004543 ORTHO05D006042 3.8e-196 689.1 533 65.3
HPP92_007000 Vanilla planifolia HOM05D004543 ORTHO05D006042 1.9e-195 686.8 756 50.0
Rhsim08G0188800 Rhododendron simsii HOM05D004543 ORTHO05D006042 1.7e-191 673.7 526 65.6
AagrBONN_evm.TU.Sc2ySwM_344.2190 Anthoceros agrestis HOM05D004543 ORTHO05D006042 8.2e-191 671.4 753 47.8
Pp3c14_17740 Physcomitrium patens HOM05D004543 ORTHO05D006042 3.8e-188 662.5 757 48.5
Pp3c17_20170 Physcomitrium patens HOM05D004543 ORTHO05D006042 9.7e-184 647.9 749 48.2
Solyc08g006660.2 Solanum lycopersicum HOM05D004543 ORTHO05D006042 5.3e-182 642.1 541 63.0
SMO347G0349 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 9.1e-166 588.2 739 43.8
DCAR_026221 Daucus carota HOM05D004543 ORTHO05D006042 3.7e-151 539.7 747 43.4
Sabra12G0070400 Salix brachista HOM05D004543 ORTHO05D006042 2.7e-149 533.5 390 70.5
CBR_g49627 Chara braunii HOM05D004543 ORTHO05D006042 4.4e-144 516.2 612 46.4
Zm00001eb064480 Zea mays HOM05D004543 ORTHO05D006042 7.1e-126 455.7 381 61.7
Manes.14G052401 Manihot esculenta HOM05D004543 ORTHO05D006042 2.7e-109 400.6 345 58.3
PRCOL_00002621 Prasinoderma coloniale HOM05D004543 ORTHO05D006042 8.7e-108 395.6 728 35.3
Medtr3g105000 Medicago truncatula HOM05D004543 ORTHO05D006042 6.9e-105 386.0 479 48.0
MCO07G105 Micromonas commoda HOM05D004543 ORTHO05D006042 4.8e-90 336.7 751 31.6
Hma1.2p1_0140F.1_g063450 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 2.6e-75 287.7 225 61.8
Cre09.g402750 Chlamydomonas reinhardtii HOM05D004543 ORTHO05D006042 5.9e-72 276.6 837 28.6
Sc04g0000720 Simmondsia chinensis HOM05D004543 ORTHO05D006042 9.7e-67 259.2 227 61.2
HPP92_006979 Vanilla planifolia HOM05D004543 ORTHO05D006042 4.5e-56 223.8 504 34.3
Hma1.2p1_0140F.1_g063430 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 9.8e-43 179.5 216 47.2
Medtr3g105005 Medicago truncatula HOM05D004543 ORTHO05D006042 2.7e-40 171.4 193 50.8
TPR.G18590 Trifolium pratense HOM05D001327 ORTHO05D002270 4.3e-38 164.1 124 64.5
Lsat_1_v5_gn_5_92440 Lactuca sativa HOM05D004543 ORTHO05D006042 7.0e-33 146.7 197 45.2
Rhsim02G0055400 Rhododendron simsii HOM05D004543 ORTHO05D006042 3.0e-31 141.4 91 74.7
Medtr7g104380 Medicago truncatula HOM05D004543 ORTHO05D006042 1.5e-30 139.0 136 55.1
TPR.G34490 Trifolium pratense HOM05D004543 ORTHO05D006042 1.5e-27 129.0 102 57.8
Rhsim05G0168000 Rhododendron simsii HOM05D003391 ORTHO05D005563 4.9e-26 124.0 79 75.9
PSO675G5444 Papaver somniferum HOM05D004543 ORTHO05D010954 2.4e-25 121.7 229 36.2
Rhsim04G0209800 Rhododendron simsii HOM05D004543 ORTHO05D006042 9.2e-25 119.8 80 71.2
SEGI_01008 Sequoiadendron giganteum HOM05D004543 ORTHO05D037602 1.2e-24 119.4 113 54.9
Manes.14G052501 Manihot esculenta HOM05D004543 ORTHO05D006042 3.6e-21 107.8 231 36.4
SMO117G0159 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 3.7e-18 97.8 98 48.0
TPR.G22932 Trifolium pratense HOM05D004543 ORTHO05D037602 3.2e-17 94.7 92 55.4
vmacro20276 Vaccinium macrocarpon HOM05D004543 ORTHO05D037602 4.1e-17 94.4 81 61.7
SMO301G0055 Selaginella moellendorffii HOM05D004543 ORTHO05D000231 8.6e-15 86.7 279 27.2
Hma1.2p1_0140F.1_g063440 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 1.6e-13 82.4 75 56.0
TPR.G19226 Trifolium pratense HOM05D004543 ORTHO05D006042 2.6e-11 75.1 59 62.7
Lsat_1_v5_gn_3_118241 Lactuca sativa HOM05D004543 ORTHO05D001664 5.8e-11 73.9 104 41.3
SMO250G0003 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 5.8e-11 73.9 66 54.5
FAN06G0151 Fragaria x ananassa HOM05D004543 ORTHO05D022695 1.3e-10 72.8 73 53.4
FAN06G1316 Fragaria x ananassa HOM05D004543 ORTHO05D022695 1.3e-10 72.8 73 53.4
Medtr1g076750 Medicago truncatula HOM05D004543 ORTHO05D006042 2.9e-10 71.6 79 50.6
Medtr6g087290 Medicago truncatula HOM05D004543 ORTHO05D006042 3.8e-10 71.2 88 44.3
Medtr0004s0190 Medicago truncatula HOM05D004543 ORTHO05D260927 6.4e-10 70.5 67 53.7
FvH4_7g19080 Fragaria vesca HOM05D000254 ORTHO05D022695 8.4e-10 70.1 73 52.1
FAN08G3116 Fragaria x ananassa HOM05D003545 ORTHO05D004720 2.7e-08 65.1 63 54.0


User provided reference genes

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