Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s0352 Capsella rubella HOM05D004244 ORTHO05D004964 1.2e-133 479.9 269 100.0
AT3G04310 Arabidopsis thaliana HOM05D004244 ORTHO05D004964 1.7e-114 416.4 270 88.9
AL3G14300 Arabidopsis lyrata HOM05D004244 ORTHO05D004964 1.3e-111 406.8 269 84.4
CARHR078490 Cardamine hirsuta HOM05D004244 ORTHO05D004964 9.9e-99 364.0 275 77.1
Sp3g03210 Schrenkiella parvula HOM05D004244 ORTHO05D004964 1.0e-87 327.4 280 70.4
Thhalv10021319m.g Eutrema salsugineum HOM05D004244 ORTHO05D004964 2.5e-86 322.8 280 71.4
A03p33580 Brassica napus HOM05D004244 ORTHO05D004964 1.9e-73 280.0 282 67.0
Aa31LG5G14830 Aethionema arabicum HOM05D004244 ORTHO05D004964 1.2e-72 277.3 291 62.5
BraA03t12533Z Brassica rapa HOM05D004244 ORTHO05D004964 3.9e-71 272.3 282 65.6
BcaC01g04379 Brassica carinata HOM05D004244 ORTHO05D004964 6.7e-71 271.6 283 65.7
C03p40780 Brassica napus HOM05D004244 ORTHO05D004964 8.7e-71 271.2 283 66.1
BolC3t16346H Brassica oleracea HOM05D004244 ORTHO05D004964 8.7e-71 271.2 283 66.1
BcaB04g19340 Brassica carinata HOM05D004244 ORTHO05D004964 1.3e-66 257.3 289 65.4
Cpa.g.sc756.3 Carica papaya HOM05D004244 ORTHO05D004964 6.8e-31 138.7 187 48.1
Manes.08G141600 Manihot esculenta HOM05D004244 ORTHO05D004964 4.9e-29 132.5 245 40.0
Duzib106G0844 Durio zibethinus HOM05D004244 ORTHO05D004964 8.3e-29 131.7 184 49.5
Gohir.D11G254600 Gossypium hirsutum HOM05D004244 ORTHO05D004964 1.4e-28 131.0 191 47.6
Gorai.007G273200 Gossypium raimondii HOM05D004244 ORTHO05D004964 1.4e-28 131.0 191 47.6
Ciclev10021373m.g Citrus clementina HOM05D004244 ORTHO05D004964 1.8e-28 130.6 260 43.5
Potri.019G023400 Populus trichocarpa HOM05D004244 ORTHO05D004964 2.4e-28 130.2 185 44.9
Atru.chr2.1111 Acer truncatum HOM05D004244 ORTHO05D004964 1.6e-27 127.5 195 45.1
GSVIVG01026322001 Vitis vinifera HOM05D004244 ORTHO05D004964 3.5e-27 126.3 181 44.2
Sabra19G0033400 Salix brachista HOM05D004244 ORTHO05D004964 2.9e-26 123.2 178 44.9
Thecc.05G266700 Theobroma cacao HOM05D004244 ORTHO05D004964 5.0e-26 122.5 177 48.6
Gohir.A11G244500 Gossypium hirsutum HOM05D004244 ORTHO05D004964 8.6e-26 121.7 181 47.5
TAR633G1781 Trochodendron aralioides HOM05D004244 ORTHO05D004964 8.6e-26 121.7 271 34.7
PGR031G0411 Punica granatum HOM05D004244 ORTHO05D004964 1.1e-25 121.3 188 44.7
Ca_11893_v3 Cicer arietinum L. HOM05D004244 ORTHO05D004964 1.8e-23 114.0 181 40.3
MD16G1230800 Malus domestica HOM05D004244 ORTHO05D004964 3.0e-23 113.2 188 41.5
Rhsim09G0132600 Rhododendron simsii HOM05D004244 ORTHO05D004964 3.0e-23 113.2 187 39.0
Eucgr.B01738 Eucalyptus grandis HOM05D004244 ORTHO05D004964 6.8e-23 112.1 187 41.2
QL06p021978 Quercus lobata HOM05D004244 ORTHO05D004964 8.9e-23 111.7 178 40.4
Nitab4.5_0008594g0020 Nicotiana tabacum HOM05D004244 ORTHO05D004964 1.5e-22 110.9 181 42.0
Haze_11497 Corylus avellana HOM05D004244 ORTHO05D004964 3.4e-22 109.8 174 41.4
Nitab4.5_0000841g0060 Nicotiana tabacum HOM05D004244 ORTHO05D004964 3.4e-22 109.8 181 40.3
Oeu010184.1 Olea europaea HOM05D004244 ORTHO05D004964 5.7e-22 109.0 183 41.0
MBI07_g19046_MAGBIO Magnolia biondii HOM05D004244 ORTHO05D004964 1.7e-21 107.5 188 39.4
Nn3g19830 Nelumbo nucifera HOM05D004244 ORTHO05D004964 1.7e-21 107.5 194 39.7
CiPaw.01G175300 Carya illinoinensis HOM05D004244 ORTHO05D004964 2.9e-21 106.7 181 38.7
Manes.03G156200 Manihot esculenta HOM05D004244 ORTHO05D004964 6.4e-21 105.5 180 38.3
C05p62860 Brassica napus HOM05D004244 ORTHO05D004964 1.1e-20 104.8 87 66.7
BolC5t34941H Brassica oleracea HOM05D004244 ORTHO05D004964 1.1e-20 104.8 87 66.7
TAR362G0565 Trochodendron aralioides HOM05D004244 ORTHO05D004964 1.1e-20 104.8 194 40.2
CsaV3_2G012190 Cucumis sativus L. HOM05D004244 ORTHO05D004964 3.2e-20 103.2 194 38.1
Dinv27132 Davidia involucrata HOM05D004244 ORTHO05D004964 3.2e-20 103.2 241 35.3
Aqoxy5G00098 Aquilegia oxysepala HOM05D004244 ORTHO05D004964 7.0e-20 102.1 191 37.2
MD13G1225800 Malus domestica HOM05D004244 ORTHO05D004964 9.2e-20 101.7 184 40.8
MELO3C023072.2 Cucumis melo HOM05D004244 ORTHO05D004964 2.0e-19 100.5 192 37.0
Nn1g03029 Nelumbo nucifera HOM05D004244 ORTHO05D004964 2.0e-19 100.5 189 37.6
GSVIVG01001856001 Vitis vinifera HOM05D004244 ORTHO05D004964 2.0e-19 100.5 182 39.0
Actinidia34761 Actinidia chinensis HOM05D004244 ORTHO05D004964 2.7e-19 100.1 189 37.0
Actinidia38930 Actinidia chinensis HOM05D004244 ORTHO05D004964 2.7e-19 100.1 182 38.5
Medtr1g045520 Medicago truncatula HOM05D004244 ORTHO05D004964 2.7e-19 100.1 186 36.6
Cfa014824 Carpinus fangiana HOM05D004244 ORTHO05D004964 4.6e-19 99.4 179 39.7
FAN12G2846 Fragaria x ananassa HOM05D004244 ORTHO05D004964 4.6e-19 99.4 183 39.3
arahy.Tifrunner.gnm1.ann1.QYR710 Arachis hypogaea HOM05D004244 ORTHO05D004964 5.9e-19 99.0 183 36.6
Lalb_Chr03g0036891 Lupinus albus HOM05D004244 ORTHO05D004964 5.9e-19 99.0 183 38.8
FvH4_4g05190 Fragaria vesca HOM05D004244 ORTHO05D004964 7.8e-19 98.6 183 39.3
TPR.G23981 Trifolium pratense HOM05D004244 ORTHO05D004964 7.8e-19 98.6 180 36.1
arahy.Tifrunner.gnm1.ann1.9VYP7U Arachis hypogaea HOM05D004244 ORTHO05D004964 1.7e-18 97.4 183 36.6
Lj6g0017438 Lotus japonicus HOM05D004244 ORTHO05D004964 3.0e-18 96.7 179 35.2
Hma1.2p1_0112F.1_g054970 Hydrangea macrophylla HOM05D004244 ORTHO05D004964 5.0e-18 95.9 181 36.5
Peaxi162Scf00125g01118 Petunia axillaris HOM05D004244 ORTHO05D004964 5.0e-18 95.9 185 38.4
FAN17G1122 Fragaria x ananassa HOM05D004244 ORTHO05D004964 6.6e-18 95.5 183 38.8
Prupe.1G052600 Prunus persica HOM05D004244 ORTHO05D004964 6.6e-18 95.5 183 36.6
ClCG06G007490 Citrullus lanatus HOM05D004244 ORTHO05D004964 1.5e-17 94.4 187 37.4
Hund07175 Selenicereus undatus HOM05D004244 ORTHO05D004964 2.5e-17 93.6 201 37.3
A05p43120 Brassica napus HOM05D004244 ORTHO05D004964 4.3e-17 92.8 87 60.9
Lj2C46G4 Lonicera japonica HOM05D004244 ORTHO05D004964 4.3e-17 92.8 177 42.4
PGSC0003DMG402028717 Solanum tuberosum HOM05D004244 ORTHO05D004964 4.3e-17 92.8 165 39.4
VMungo0720G2410 Vigna mungo HOM05D004244 ORTHO05D004964 5.6e-17 92.4 176 35.2
Glyma.10G132400 Glycine max HOM05D004244 ORTHO05D004964 7.3e-17 92.0 182 34.6
CAN.G4.41 Capsicum annuum HOM05D004244 ORTHO05D004964 1.6e-16 90.9 175 37.1
CANSAT78G2336 Cannabis sativa HOM05D004244 ORTHO05D004964 2.1e-16 90.5 182 34.6
COL.COLO4_16006 Corchorus olitorius HOM05D004244 ORTHO05D004964 2.8e-16 90.1 184 33.7
Sopen04g021060 Solanum pennellii HOM05D004244 ORTHO05D004964 3.6e-16 89.7 178 37.1
Peaxi162Scf00077g00117 Petunia axillaris HOM05D004244 ORTHO05D004964 4.7e-16 89.4 183 36.6
Phvul.007G227000 Phaseolus vulgaris HOM05D004244 ORTHO05D004964 4.7e-16 89.4 182 34.6
TWI09G1213 Tripterygium wilfordii HOM05D004244 ORTHO05D004964 4.7e-16 89.4 185 36.8
CDE11G0045 Ceratophyllum demersum HOM05D004244 ORTHO05D004964 8.0e-16 88.6 184 35.9
Cc09_g03010 Coffea canephora HOM05D004244 ORTHO05D004964 8.0e-16 88.6 183 32.8
Gohir.D09G232300 Gossypium hirsutum HOM05D004244 ORTHO05D004964 8.0e-16 88.6 185 34.6
Migut.F02055 Erythranthe guttata HOM05D004244 ORTHO05D004964 1.1e-15 88.2 183 35.5
COL.COLO4_15535 Corchorus olitorius HOM05D004244 ORTHO05D004964 1.8e-15 87.4 168 41.1
MSTRG.9217 Avicennia marina HOM05D004244 ORTHO05D004964 2.3e-15 87.0 176 35.8
Duzib052G0780 Durio zibethinus HOM05D004244 ORTHO05D004964 3.1e-15 86.7 187 34.8
Duzib052G0270 Durio zibethinus HOM05D004244 ORTHO05D004964 4.0e-15 86.3 187 34.8
Gohir.A09G231200 Gossypium hirsutum HOM05D004244 ORTHO05D004964 4.0e-15 86.3 185 34.1
Gorai.006G255200 Gossypium raimondii HOM05D004244 ORTHO05D004964 4.0e-15 86.3 185 34.6
Lsat_1_v5_gn_2_42020 Lactuca sativa HOM05D004244 ORTHO05D004964 4.0e-15 86.3 188 34.6
Potri.010G063300 Populus trichocarpa HOM05D004244 ORTHO05D004964 4.0e-15 86.3 183 35.0
Hma1.2p1_0130F.1_g060490 Hydrangea macrophylla HOM05D004244 ORTHO05D004964 6.8e-15 85.5 236 31.8
PSO674G0105 Papaver somniferum HOM05D004244 ORTHO05D004964 6.8e-15 85.5 186 32.3
SalBow1G0411 Salvia bowleyana HOM05D004244 ORTHO05D004964 6.8e-15 85.5 189 33.3
Actinidia11381 Actinidia chinensis HOM05D004244 ORTHO05D004964 8.9e-15 85.1 192 34.9
PSO170G0851 Papaver somniferum HOM05D004244 ORTHO05D004964 8.9e-15 85.1 180 32.2
Sc09g0001820 Simmondsia chinensis HOM05D004244 ORTHO05D004964 1.2e-14 84.7 201 36.8
SalBow3G0496 Salvia bowleyana HOM05D004244 ORTHO05D004964 2.0e-14 84.0 184 34.2
SalBow3G1459 Salvia bowleyana HOM05D004244 ORTHO05D004964 2.0e-14 84.0 184 34.2
MSTRG.24646 Avicennia marina HOM05D004244 ORTHO05D004964 2.6e-14 83.6 189 33.9
Rhsim02G0048800 Rhododendron simsii HOM05D004244 ORTHO05D004964 2.6e-14 83.6 177 32.8
ATR0723G041 Amborella trichopoda HOM05D004244 ORTHO05D004964 4.4e-14 82.8 175 36.0
Thecc.04G269100 Theobroma cacao HOM05D004244 ORTHO05D004964 4.4e-14 82.8 184 34.2
Sabra10G0043500 Salix brachista HOM05D004244 ORTHO05D004964 2.9e-13 80.1 175 33.1
EL10Ac4g09763 Beta vulgaris HOM05D004244 ORTHO05D004964 2.4e-12 77.0 194 33.5
Eucgr.H02883 Eucalyptus grandis HOM05D004244 ORTHO05D004964 5.4e-12 75.9 183 31.1
Solyc04g050270.1 Solanum lycopersicum HOM05D004244 ORTHO05D004964 5.4e-12 75.9 159 37.1
Psat1g024120 Pisum sativum HOM05D004244 ORTHO05D004964 7.0e-12 75.5 181 31.5
Sopen09g033990 Solanum pennellii HOM05D004244 ORTHO05D004964 7.0e-12 75.5 178 32.0
HPP92_025817 Vanilla planifolia HOM05D004244 ORTHO05D004964 9.2e-12 75.1 189 33.9
Solyc09g091010.3 Solanum lycopersicum HOM05D004244 ORTHO05D004964 1.6e-11 74.3 178 31.5
EL10Ac3g06716 Beta vulgaris HOM05D004244 ORTHO05D004964 2.0e-11 73.9 181 31.5
Cc03_g06840 Coffea canephora HOM05D004244 ORTHO05D004964 2.7e-11 73.6 179 33.5
PGSC0003DMG402001493 Solanum tuberosum HOM05D004244 ORTHO05D004964 4.6e-11 72.8 182 30.8
Oeu008815.1 Olea europaea HOM05D004244 ORTHO05D004964 6.0e-11 72.4 153 36.6
CSS0047414 Camellia sinensis var. sinensis HOM05D004244 ORTHO05D004964 1.0e-10 71.6 151 35.1
Migut.N00322 Erythranthe guttata HOM05D004244 ORTHO05D004964 1.0e-10 71.6 208 29.8
CSS0047223 Camellia sinensis var. sinensis HOM05D004244 ORTHO05D004964 2.3e-10 70.5 150 34.7
AUR62006986 Chenopodium quinoa HOM05D004244 ORTHO05D004964 6.6e-10 68.9 169 34.3
Aa31LG5G4140 Aethionema arabicum HOM05D004244 ORTHO05D004964 8.6e-10 68.6 184 33.2
Cpa.g.sc59.37 Carica papaya HOM05D004244 ORTHO05D004964 8.6e-10 68.6 193 31.6
PGR004G0368 Punica granatum HOM05D004244 ORTHO05D004964 8.6e-10 68.6 198 31.3
Nitab4.5_0000451g0020 Nicotiana tabacum HOM05D004244 ORTHO05D004964 1.1e-09 68.2 183 31.1
Nitab4.5_0000867g0080 Nicotiana tabacum HOM05D004244 ORTHO05D004964 2.5e-09 67.0 182 30.8
SGA_v2.0_scaffold329G48831 Striga asiatica HOM05D004244 ORTHO05D004964 4.3e-09 66.2 187 29.9
Sc19g0005660 Simmondsia chinensis HOM05D004244 ORTHO05D004964 5.6e-09 65.9 195 29.2
vmacro10383 Vaccinium macrocarpon HOM05D004244 ORTHO05D004964 9.5e-09 65.1 124 36.3
DCAR_030773 Daucus carota HOM05D004244 ORTHO05D004964 1.2e-08 64.7 152 36.2
Atru.chr4.1873 Acer truncatum HOM05D004244 ORTHO05D004964 2.8e-08 63.5 180 31.7
Ah.06g187950 Amaranthus hybridus HOM05D004244 ORTHO05D004964 1.4e-07 61.2 135 34.1
AUR62000633 Chenopodium quinoa HOM05D004244 ORTHO05D004964 2.3e-07 60.5 176 29.5
Sed0027895 Sechium edule HOM05D004244 ORTHO05D004964 1.2e-06 58.2 147 32.7
Thhalv10017015m.g Eutrema salsugineum HOM05D004244 ORTHO05D004964 1.5e-06 57.8 183 31.7
ECA238G3737 Erigeron canadensis HOM05D004244 ORTHO05D004964 5.8e-06 55.8 134 29.9


User provided reference genes

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