Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s0342 Capsella rubella HOM05D006063 ORTHO05D000023 0.0e+00 1238.8 704 100.0
AL3G14090 Arabidopsis lyrata HOM05D006063 ORTHO05D000023 5.0e-283 977.6 716 78.1
AT3G04160 Arabidopsis thaliana HOM05D006063 ORTHO05D000023 6.1e-273 944.1 722 71.9
CARHR078300 Cardamine hirsuta HOM05D006063 ORTHO05D000023 4.7e-265 917.9 723 71.0
Thhalv10020148m.g Eutrema salsugineum HOM05D006063 ORTHO05D000023 1.4e-264 916.4 642 76.0
Sp3g03130 Schrenkiella parvula HOM05D006063 ORTHO05D000023 2.6e-255 885.6 715 69.5
Aa31LG5G14700 Aethionema arabicum HOM05D006063 ORTHO05D000023 1.9e-221 773.1 729 63.0
BcaB04g19349 Brassica carinata HOM05D006063 ORTHO05D000023 3.7e-214 748.8 710 62.3
C03p40730 Brassica napus HOM05D006063 ORTHO05D000023 4.0e-200 702.2 712 59.1
A03p33520 Brassica napus HOM05D006063 ORTHO05D000023 3.2e-197 692.6 711 61.7
BraA03t12527Z Brassica rapa HOM05D006063 ORTHO05D000023 1.9e-194 683.3 711 61.3
BcaC01g04385 Brassica carinata HOM05D006063 ORTHO05D000023 7.6e-191 671.4 706 60.6
BolC3t16339H Brassica oleracea HOM05D006063 ORTHO05D000023 7.1e-189 664.8 706 61.8
THA.LOC104820746 Tarenaya hassleriana HOM05D006063 ORTHO05D000023 5.1e-187 658.7 728 54.9
Cpa.g.sc51.61 Carica papaya HOM05D006063 ORTHO05D000023 1.3e-137 494.6 570 49.6
Thecc.05G261400 Theobroma cacao HOM05D006063 ORTHO05D000023 6.3e-121 439.1 648 43.7
Gorai.013G118800 Gossypium raimondii HOM05D006063 ORTHO05D000023 2.7e-119 433.7 652 43.6
Gohir.D13G106000 Gossypium hirsutum HOM05D006063 ORTHO05D000023 4.5e-119 433.0 652 43.7
CsaV3_1G044890 Cucumis sativus L. HOM05D006063 ORTHO05D000023 3.9e-118 429.9 530 48.9
Ciclev10019009m.g Citrus clementina HOM05D006063 ORTHO05D000023 3.3e-117 426.8 648 43.7
TWI34G0066 Tripterygium wilfordii HOM05D006063 ORTHO05D000023 1.5e-114 417.9 680 42.9
MELO3C010119.2 Cucumis melo HOM05D006063 ORTHO05D000023 7.5e-114 415.6 621 43.5
CANSAT54G1152 Cannabis sativa HOM05D006063 ORTHO05D000023 9.8e-114 415.2 664 41.6
Sabra19G0039200 Salix brachista HOM05D006063 ORTHO05D000023 9.8e-114 415.2 614 43.6
FAN09G4822 Fragaria x ananassa HOM05D006063 ORTHO05D000023 1.7e-113 414.5 673 41.3
FvH4_6g01260 Fragaria vesca HOM05D006063 ORTHO05D000023 3.7e-113 413.3 673 41.2
Aqoxy2G04022 Aquilegia oxysepala HOM05D006063 ORTHO05D000023 2.4e-112 410.6 654 40.8
Prupe.6G355400 Prunus persica HOM05D006063 ORTHO05D000023 2.4e-112 410.6 695 41.2
Manes.09G145100 Manihot esculenta HOM05D006063 ORTHO05D000023 4.1e-112 409.8 668 41.6
Sabra19G0036100 Salix brachista HOM05D006063 ORTHO05D000023 2.0e-111 407.5 611 42.7
Potri.019G029400 Populus trichocarpa HOM05D006063 ORTHO05D000023 3.5e-111 406.8 674 43.5
Sed0026121 Sechium edule HOM05D006063 ORTHO05D000023 1.0e-110 405.2 634 42.6
ClCG03G011330 Citrullus lanatus HOM05D006063 ORTHO05D000023 3.9e-110 403.3 583 42.7
FAN02G3689 Fragaria x ananassa HOM05D006063 ORTHO05D000023 9.5e-109 398.7 673 40.7
FAN05G0856 Fragaria x ananassa HOM05D006063 ORTHO05D000023 1.2e-108 398.3 676 41.0
Eucgr.H04160 Eucalyptus grandis HOM05D006063 ORTHO05D000023 1.1e-107 395.2 578 43.6
TAR362G1155 Trochodendron aralioides HOM05D006063 ORTHO05D000023 1.2e-106 391.7 711 39.2
MD04G1235500 Malus domestica HOM05D006063 ORTHO05D000023 1.5e-106 391.3 696 39.7
Actinidia34754 Actinidia chinensis HOM05D006063 ORTHO05D000023 4.1e-104 383.3 585 42.9
A05p43190 Brassica napus HOM05D006063 ORTHO05D000023 1.6e-103 381.3 363 62.5
Hund07147 Selenicereus undatus HOM05D006063 ORTHO05D000023 1.1e-101 375.2 665 38.8
EL10Ac4g09796 Beta vulgaris HOM05D006063 ORTHO05D000023 2.8e-100 370.5 645 38.1
vmacro10365 Vaccinium macrocarpon HOM05D006063 ORTHO05D000023 1.7e-97 361.3 626 41.9
CSS0004581 Camellia sinensis var. sinensis HOM05D006063 ORTHO05D000023 3.7e-97 360.1 614 39.4
Rhsim09G0137100 Rhododendron simsii HOM05D006063 ORTHO05D000023 2.4e-96 357.5 677 40.2
Nitab4.5_0000504g0070 Nicotiana tabacum HOM05D006063 ORTHO05D000023 7.1e-96 355.9 515 43.7
Sc16g0010060 Simmondsia chinensis HOM05D006063 ORTHO05D000023 7.1e-96 355.9 610 39.0
CAN.G4.18 Capsicum annuum HOM05D006063 ORTHO05D000023 4.3e-93 346.7 509 42.8
Lsat_1_v5_gn_9_46040 Lactuca sativa HOM05D006063 ORTHO05D000023 4.3e-93 346.7 659 38.7
AUR62005299 Chenopodium quinoa HOM05D006063 ORTHO05D000765 1.6e-92 344.7 528 41.1
ATR0618G015 Amborella trichopoda HOM05D006063 ORTHO05D000023 2.8e-92 344.0 617 40.2
Migut.F02045 Erythranthe guttata HOM05D006063 ORTHO05D000023 1.8e-91 341.3 608 40.5
PSO063G1700 Papaver somniferum HOM05D006063 ORTHO05D000023 1.2e-90 338.6 697 37.6
MSTRG.9222 Avicennia marina HOM05D006063 ORTHO05D000023 1.3e-89 335.1 622 38.3
Cc09_g03150 Coffea canephora HOM05D006063 ORTHO05D000023 2.9e-89 334.0 611 38.8
PGSC0003DMG400015112 Solanum tuberosum HOM05D006063 ORTHO05D000023 6.4e-89 332.8 595 39.7
Solyc04g050760.4 Solanum lycopersicum HOM05D006063 ORTHO05D000023 1.1e-88 332.0 596 39.3
Peaxi162Scf00071g01413 Petunia axillaris HOM05D006063 ORTHO05D000023 1.4e-88 331.6 515 42.5
SHI14775 Sapria himalayana HOM05D006063 ORTHO05D000023 7.1e-88 329.3 526 38.8
SalBow1G1068 Salvia bowleyana HOM05D006063 ORTHO05D000023 2.1e-87 327.8 580 39.3
Sopen04g021710 Solanum pennellii HOM05D006063 ORTHO05D000023 2.1e-87 327.8 596 39.1
Glyma.10G169000 Glycine max HOM05D006063 ORTHO05D000023 4.6e-87 326.6 618 37.7
VMungo0720G1344 Vigna mungo HOM05D006063 ORTHO05D000023 1.7e-86 324.7 612 38.6
PSO017G2613 Papaver somniferum HOM05D006063 ORTHO05D000023 3.9e-86 323.6 655 37.1
Phvul.L001648 Phaseolus vulgaris HOM05D006063 ORTHO05D000023 5.1e-86 323.2 617 38.2
Lalb_Chr21g0311331 Lupinus albus HOM05D006063 ORTHO05D000023 6.6e-86 322.8 571 39.6
Lj3g0014127 Lotus japonicus HOM05D006063 ORTHO05D000023 1.5e-85 321.6 605 36.0
Nitab4.5_0004201g0010 Nicotiana tabacum HOM05D006063 ORTHO05D000023 7.3e-85 319.3 567 39.5
SalBow1G3325 Salvia bowleyana HOM05D006063 ORTHO05D000023 1.3e-84 318.5 551 40.5
arahy.Tifrunner.gnm1.ann1.2N7XA4 Arachis hypogaea HOM05D006063 ORTHO05D000023 4.8e-84 316.6 593 38.1
CiPaw.07G075500 Carya illinoinensis HOM05D006063 ORTHO05D000023 1.4e-83 315.1 522 40.6
Oeu010183.1 Olea europaea HOM05D006063 ORTHO05D000023 2.4e-83 314.3 464 43.1
SGA_v2.0_scaffold62G21476 Striga asiatica HOM05D006063 ORTHO05D000023 9.0e-83 312.4 556 38.3
MBI07_g04744_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 1.2e-82 312.0 587 37.0
arahy.Tifrunner.gnm1.ann1.JVQ2Z4 Arachis hypogaea HOM05D006063 ORTHO05D000023 1.5e-82 311.6 597 37.4
HanXRQChr15g0491401 Helianthus annuus HOM05D006063 ORTHO05D000023 1.7e-81 308.1 601 37.6
Ca_09979_v3 Cicer arietinum L. HOM05D006063 ORTHO05D000023 2.9e-81 307.4 604 35.9
Ca_09995_v3 Cicer arietinum L. HOM05D006063 ORTHO05D000023 2.9e-81 307.4 604 35.9
Lj2A50T27 Lonicera japonica HOM05D006063 ORTHO05D000023 6.4e-81 306.2 384 46.4
Medtr1g079470 Medicago truncatula HOM05D006063 ORTHO05D000023 8.7e-78 295.8 603 36.0
Gohir.A13G102800 Gossypium hirsutum HOM05D006063 ORTHO05D000023 3.6e-76 290.4 379 47.2
FAN05G5389 Fragaria x ananassa HOM05D006063 ORTHO05D000023 6.2e-76 289.7 431 43.2
QL07p027196 Quercus lobata HOM05D006063 ORTHO05D000023 2.9e-73 280.8 698 34.2
MBI18_g19284_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 3.7e-68 263.8 417 41.7
Dinv03784 Davidia involucrata HOM05D006063 ORTHO05D000023 1.2e-66 258.8 446 40.4
Atru.chr2.1232 Acer truncatum HOM05D006063 ORTHO05D000023 2.9e-65 254.2 370 39.7
RcHm_v2.0_Chr3g0448821 Rosa chinensis HOM05D006063 ORTHO05D000023 2.5e-64 251.1 279 52.3
Hma1.2p1_0153F.1_g067880 Hydrangea macrophylla HOM05D006063 ORTHO05D000023 3.2e-64 250.8 487 36.1
A05p43200 Brassica napus HOM05D000005 ORTHO05D000449 4.3e-61 240.4 253 66.4
SMO351G0027 Selaginella moellendorffii HOM05D006063 ORTHO05D000023 1.1e-59 235.7 609 32.3
CSS0046279 Camellia sinensis var. sinensis HOM05D006063 ORTHO05D000023 2.4e-59 234.6 443 38.6
Haze_04487 Corylus avellana HOM05D006063 ORTHO05D000023 6.5e-57 226.5 660 30.9
AagrBONN_evm.TU.Sc2ySwM_362.520 Anthoceros agrestis HOM05D006063 ORTHO05D000023 3.1e-51 207.6 578 29.2
Mapoly0001s0430 Marchantia polymorpha HOM05D006063 ORTHO05D000023 3.1e-51 207.6 628 28.7
Os04g0349401 Oryza sativa ssp. japonica HOM05D006063 ORTHO05D000023 9.0e-51 206.1 286 42.0
TPR.G10281 Trifolium pratense HOM05D006063 ORTHO05D000023 5.9e-50 203.4 356 37.1
BraA05t23062Z Brassica rapa HOM05D006063 ORTHO05D000023 9.4e-48 196.1 258 51.2
Zm00001eb086400 Zea mays HOM05D006063 ORTHO05D000023 1.2e-47 195.7 466 34.1
C05p62940 Brassica napus HOM05D000005 ORTHO05D000449 3.0e-46 191.0 157 68.8
ECA232G4499 Erigeron canadensis HOM05D006063 ORTHO05D000023 2.0e-45 188.3 369 39.3
COL.COLO4_20542 Corchorus olitorius HOM05D006063 ORTHO05D000023 4.3e-45 187.2 265 47.9
Pp3c17_4760 Physcomitrium patens HOM05D006063 ORTHO05D000023 3.1e-43 181.0 628 28.5
Psat6g141160 Pisum sativum HOM05D006063 ORTHO05D000023 2.1e-39 168.3 363 36.6
CDE05G2869 Ceratophyllum demersum HOM05D006063 ORTHO05D000023 2.3e-38 164.9 220 42.3
C05p62930 Brassica napus HOM05D000005 ORTHO05D000294 1.1e-37 162.5 112 67.9
FvH4_5g38930 Fragaria vesca HOM05D006063 ORTHO05D000023 1.5e-37 162.2 251 46.6
MBI18_g46979_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 2.0e-37 161.8 384 35.2
GSVIVG01026370001 Vitis vinifera HOM05D006063 ORTHO05D000023 1.3e-36 159.1 239 46.0
HPP92_006232 Vanilla planifolia HOM05D006063 ORTHO05D000023 1.7e-36 158.7 238 40.3
Atru.chr2.1231 Acer truncatum HOM05D006063 ORTHO05D000023 5.0e-33 147.1 100 76.0
HPP92_006233 Vanilla planifolia HOM05D006063 ORTHO05D000023 9.4e-32 142.9 254 41.3
CDE05G3203 Ceratophyllum demersum HOM05D006063 ORTHO05D000023 1.3e-28 132.5 223 41.3
DCAR_005531 Daucus carota HOM05D006063 ORTHO05D000023 9.1e-27 126.3 288 32.6
SEGI_40887 Sequoiadendron giganteum HOM05D006063 ORTHO05D000023 1.9e-24 118.6 193 41.5
CsaV3_1G044530 Cucumis sativus L. HOM05D006063 ORTHO05D000023 8.8e-22 109.8 115 58.3
RcHm_v2.0_Chr3g0448831 Rosa chinensis HOM05D006063 ORTHO05D000023 1.5e-21 109.0 149 41.6
Cpa.g.sc51.65 Carica papaya HOM05D006063 ORTHO05D000023 9.8e-21 106.3 296 30.7
Cpa.g.sc51.64 Carica papaya HOM05D006063 ORTHO05D000023 4.0e-14 84.3 109 44.0
BcaC05g30213 Brassica carinata HOM05D006063 ORTHO05D000023 8.8e-14 83.2 49 87.8
MBI18_g46978_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 5.6e-08 63.9 244 29.9
AL3G13000 Arabidopsis lyrata HOM05D054198 ORTHO05D000023 1.6e-07 62.4 57 59.6
Dinv03782 Davidia involucrata HOM05D006063 ORTHO05D045148 6.1e-07 60.5 40 75.0


User provided reference genes

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