Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s0327 Capsella rubella HOM05D007136 ORTHO05D008986 6.9e-173 610.5 305 100.0
AL3G13930 Arabidopsis lyrata HOM05D007136 ORTHO05D008986 2.1e-161 572.4 305 93.4
CARHR078150 Cardamine hirsuta HOM05D007136 ORTHO05D008986 9.7e-159 563.5 305 91.1
C05p63040 Brassica napus HOM05D007136 ORTHO05D008986 7.9e-153 543.9 305 87.5
BolC5t34957H Brassica oleracea HOM05D007136 ORTHO05D008986 7.9e-153 543.9 305 87.5
BraA05t23073Z Brassica rapa HOM05D007136 ORTHO05D008986 2.3e-152 542.3 305 87.2
Sp3g03000 Schrenkiella parvula HOM05D007136 ORTHO05D008986 5.7e-151 537.7 305 87.2
Thhalv10021212m.g Eutrema salsugineum HOM05D007136 ORTHO05D008986 4.1e-149 531.6 305 86.2
A05p43340 Brassica napus HOM05D007136 ORTHO05D008986 3.0e-144 515.4 290 86.9
Aa31LG5G14590 Aethionema arabicum HOM05D007136 ORTHO05D008986 3.1e-141 505.4 312 81.1
BcaC05g30543 Brassica carinata HOM05D007136 ORTHO05D008986 1.9e-138 496.1 287 85.0
AT3G04020 Arabidopsis thaliana HOM05D007136 ORTHO05D008986 7.5e-119 431.0 241 89.2
THA.LOC104799346 Tarenaya hassleriana HOM05D007136 ORTHO05D008986 1.2e-116 423.7 304 66.8
Thecc.10G044100 Theobroma cacao HOM05D007136 ORTHO05D008986 8.3e-94 347.8 310 54.8
Gorai.011G257200 Gossypium raimondii HOM05D007136 ORTHO05D008986 1.3e-91 340.5 309 54.0
Gohir.D10G226000 Gossypium hirsutum HOM05D007136 ORTHO05D008986 1.1e-90 337.4 309 53.4
Gohir.A10G217300 Gossypium hirsutum HOM05D007136 ORTHO05D008986 2.8e-89 332.8 309 52.8
FvH4_7g22120 Fragaria vesca HOM05D007136 ORTHO05D008986 4.7e-89 332.0 308 52.6
Potri.010G205900 Populus trichocarpa HOM05D007136 ORTHO05D008986 6.2e-89 331.6 308 51.6
FAN01G1261 Fragaria x ananassa HOM05D007136 ORTHO05D008986 1.1e-88 330.9 308 52.3
FAN01G1850 Fragaria x ananassa HOM05D007136 ORTHO05D008986 1.1e-88 330.9 308 52.3
FAN06G2040 Fragaria x ananassa HOM05D007136 ORTHO05D008986 1.1e-88 330.9 308 52.6
Prupe.2G233400 Prunus persica HOM05D007136 ORTHO05D008986 1.2e-87 327.4 308 50.6
Hma1.2p1_0683F.1_g202870 Hydrangea macrophylla HOM05D007136 ORTHO05D008986 1.5e-87 327.0 309 51.8
Atru.chr12.462 Acer truncatum HOM05D007136 ORTHO05D008986 2.6e-87 326.2 308 52.9
Dinv26003 Davidia involucrata HOM05D007136 ORTHO05D008986 5.8e-87 325.1 308 52.9
CiPaw.01G285300 Carya illinoinensis HOM05D007136 ORTHO05D008986 9.9e-87 324.3 308 51.3
GSVIVG01016535001 Vitis vinifera HOM05D007136 ORTHO05D008986 9.9e-87 324.3 308 52.6
MD07G1196400 Malus domestica HOM05D007136 ORTHO05D008986 1.7e-86 323.6 308 50.3
RcHm_v2.0_Chr1g0366511 Rosa chinensis HOM05D007136 ORTHO05D008986 3.8e-86 322.4 308 51.6
CANSAT56G3368 Cannabis sativa HOM05D007136 ORTHO05D008986 4.9e-86 322.0 307 51.8
Haze_17049 Corylus avellana HOM05D007136 ORTHO05D008986 4.9e-86 322.0 319 50.8
FAN06G2061 Fragaria x ananassa HOM05D007136 ORTHO05D008986 4.9e-86 322.0 308 51.3
Atru.chr12.484 Acer truncatum HOM05D007136 ORTHO05D008986 2.4e-85 319.7 308 51.9
Rhsim09G0165500 Rhododendron simsii HOM05D007136 ORTHO05D008986 4.1e-85 318.9 308 51.0
Glyma.18G289500 Glycine max HOM05D007136 ORTHO05D008986 5.4e-85 318.5 308 50.6
TWI15G0021 Tripterygium wilfordii HOM05D007136 ORTHO05D008986 9.2e-85 317.8 308 50.3
TAR633G2090 Trochodendron aralioides HOM05D000330 ORTHO05D008986 2.1e-84 316.6 308 51.0
PGR044G0021 Punica granatum HOM05D007136 ORTHO05D008986 3.5e-84 315.8 306 50.3
Ciclev10032197m.g Citrus clementina HOM05D007136 ORTHO05D008986 3.9e-83 312.4 308 50.0
FAN03G0232 Fragaria x ananassa HOM05D007136 ORTHO05D008986 1.1e-82 310.8 308 50.0
VMungo1383G1564 Vigna mungo HOM05D007136 ORTHO05D008986 1.1e-82 310.8 308 49.4
Cc02_g07990 Coffea canephora HOM05D007136 ORTHO05D008986 1.5e-82 310.5 309 48.9
Nn2g10391 Nelumbo nucifera HOM05D007136 ORTHO05D008986 1.9e-82 310.1 308 49.0
vmacro10240 Vaccinium macrocarpon HOM05D007136 ORTHO05D008986 1.9e-82 310.1 309 48.2
Sabra10G0159100 Salix brachista HOM05D007136 ORTHO05D008986 2.5e-82 309.7 354 45.8
Aqoxy2G02097 Aquilegia oxysepala HOM05D007136 ORTHO05D008986 2.8e-81 306.2 306 49.3
Phvul.008G012700 Phaseolus vulgaris HOM05D007136 ORTHO05D008986 8.1e-81 304.7 308 49.0
Actinidia29223 Actinidia chinensis HOM05D007136 ORTHO05D008986 4.0e-80 302.4 308 48.4
Ca_07254_v3 Cicer arietinum L. HOM05D007136 ORTHO05D008986 4.0e-80 302.4 308 48.4
Nitab4.5_0000931g0010 Nicotiana tabacum HOM05D007136 ORTHO05D008986 6.9e-80 301.6 309 48.2
TPR.G15525 Trifolium pratense HOM05D007136 ORTHO05D008986 2.0e-79 300.1 308 49.0
Medtr7g024560 Medicago truncatula HOM05D007136 ORTHO05D008986 3.4e-79 299.3 308 48.1
Psat3g181320 Pisum sativum HOM05D007136 ORTHO05D008986 3.4e-79 299.3 308 48.1
Lalb_Chr10g0091721 Lupinus albus HOM05D007136 ORTHO05D008986 7.6e-79 298.1 308 48.1
Migut.F01500 Erythranthe guttata HOM05D007136 ORTHO05D008986 9.9e-79 297.7 309 46.3
Lj1g0011729 Lotus japonicus HOM05D007136 ORTHO05D008986 9.9e-79 297.7 308 48.1
PSO339G3352 Papaver somniferum HOM05D007136 ORTHO05D008986 1.7e-78 297.0 298 49.0
arahy.Tifrunner.gnm1.ann1.IQ4HGL Arachis hypogaea HOM05D007136 ORTHO05D008986 3.8e-78 295.8 308 47.7
arahy.Tifrunner.gnm1.ann1.RSMT0C Arachis hypogaea HOM05D007136 ORTHO05D008986 3.8e-78 295.8 308 47.7
PSO151G0201 Papaver somniferum HOM05D007136 ORTHO05D008986 8.4e-78 294.7 299 48.2
DCAR_027635 Daucus carota HOM05D007136 ORTHO05D008986 3.2e-77 292.7 309 46.9
Sopen06g013560 Solanum pennellii HOM05D007136 ORTHO05D008986 4.2e-77 292.4 309 46.3
AUR62038352 Chenopodium quinoa HOM05D007136 ORTHO05D008986 1.6e-76 290.4 306 47.7
Hund20032 Selenicereus undatus HOM05D007136 ORTHO05D008986 2.7e-76 289.7 341 44.6
Cfa001492 Carpinus fangiana HOM05D007136 ORTHO05D008986 3.5e-76 289.3 268 51.9
Ah.16g107010 Amaranthus hybridus HOM05D007136 ORTHO05D008986 6.0e-76 288.5 306 46.1
ClCG09G019950 Citrullus lanatus HOM05D007136 ORTHO05D008986 6.0e-76 288.5 308 47.4
Lsat_1_v5_gn_2_119701 Lactuca sativa HOM05D007136 ORTHO05D008986 6.0e-76 288.5 306 46.7
Peaxi162Scf00658g00728 Petunia axillaris HOM05D007136 ORTHO05D008986 1.3e-75 287.3 304 46.7
COL.COLO4_14997 Corchorus olitorius HOM05D007136 ORTHO05D008986 1.7e-75 287.0 355 44.2
Sed0006263 Sechium edule HOM05D007136 ORTHO05D008986 1.7e-75 287.0 308 45.1
QL08p059192 Quercus lobata HOM05D007136 ORTHO05D008986 3.0e-75 286.2 430 38.4
Nitab4.5_0000065g0080 Nicotiana tabacum HOM05D007136 ORTHO05D008986 3.9e-75 285.8 308 47.7
MELO3C021650.2 Cucumis melo HOM05D007136 ORTHO05D008986 1.9e-74 283.5 309 46.9
MSTRG.8246 Avicennia marina HOM05D007136 ORTHO05D008986 2.5e-74 283.1 309 45.0
SGA_v2.0_scaffold86G26943 Striga asiatica HOM05D007136 ORTHO05D008986 1.3e-73 280.8 307 44.3
CsaV3_5G026510 Cucumis sativus L. HOM05D007136 ORTHO05D008986 2.1e-73 280.0 309 46.6
ECA238G4577 Erigeron canadensis HOM05D007136 ORTHO05D008986 3.6e-73 279.3 312 44.9
SalBow6G2062 Salvia bowleyana HOM05D007136 ORTHO05D008986 3.6e-73 279.3 309 44.0
EL10Ac2g03388 Beta vulgaris HOM05D007136 ORTHO05D008986 2.6e-71 273.1 357 42.0
HanXRQChr14g0458151 Helianthus annuus HOM05D007136 ORTHO05D008986 5.8e-71 271.9 309 43.0
HPP92_001682 Vanilla planifolia HOM05D007136 ORTHO05D008986 5.6e-66 255.4 309 42.4
Os03g0276600 Oryza sativa ssp. japonica HOM05D007136 ORTHO05D008986 7.4e-66 255.0 312 43.3
Manes.07G114900 Manihot esculenta HOM05D007136 ORTHO05D008986 1.3e-65 254.2 238 51.3
ATR0559G284 Amborella trichopoda HOM05D007136 ORTHO05D008986 2.1e-65 253.4 293 43.3
Eucgr.J00020 Eucalyptus grandis HOM05D007136 ORTHO05D008986 3.1e-64 249.6 238 49.6
Hma1.2p1_0683F.1_g202860 Hydrangea macrophylla HOM05D007136 ORTHO05D008986 3.2e-61 239.6 251 49.0
CDE09G1315 Ceratophyllum demersum HOM05D007136 ORTHO05D008986 1.2e-60 237.7 303 42.6
unitig_736.g22315 Utricularia gibba HOM05D007136 ORTHO05D008986 1.6e-60 237.3 325 41.5
MBI05_g22899_MAGBIO Magnolia biondii HOM05D007136 ORTHO05D008986 2.1e-60 236.9 297 43.4
Cpa.g.sc1.397 Carica papaya HOM05D007136 ORTHO05D008986 3.0e-59 233.0 242 50.0
SEGI_31981 Sequoiadendron giganteum HOM05D007136 ORTHO05D008986 3.9e-59 232.6 293 40.6
CSS0027543 Camellia sinensis var. sinensis HOM05D007136 ORTHO05D008986 4.3e-58 229.2 267 46.4
CSS0005502 Camellia sinensis var. sinensis HOM05D007136 ORTHO05D008986 9.6e-58 228.0 267 46.1
Sc09g0007080 Simmondsia chinensis HOM05D007136 ORTHO05D008986 4.2e-53 212.6 223 47.1
Pp3c12_11030 Physcomitrium patens HOM05D007136 ORTHO05D008986 4.6e-52 209.1 289 36.0
Solyc06g043070.4 Solanum lycopersicum HOM05D007136 ORTHO05D008986 6.0e-52 208.8 240 44.6
Zm00001eb012480 Zea mays HOM05D007136 ORTHO05D008986 1.6e-49 200.7 287 38.7
Lj4C909G7 Lonicera japonica HOM05D007136 ORTHO05D008986 3.4e-47 193.0 218 45.4
Duzib106G1934 Durio zibethinus HOM05D007136 ORTHO05D008986 2.7e-44 183.3 175 50.9
Dinv31448 Davidia involucrata HOM05D007136 ORTHO05D008986 6.1e-44 182.2 232 43.1
Mapoly0002s0030 Marchantia polymorpha HOM05D007136 ORTHO05D008986 5.5e-37 159.1 268 31.3
Glyma.02G092900 Glycine max HOM05D007136 ORTHO05D008986 6.7e-35 152.1 241 36.1
AUR62041862 Chenopodium quinoa HOM05D007136 ORTHO05D008986 1.5e-31 141.0 115 53.0
AUR62041861 Chenopodium quinoa HOM05D007136 ORTHO05D008986 8.2e-17 92.0 113 45.1
CSS0002221 Camellia sinensis var. sinensis HOM05D007136 ORTHO05D008986 3.1e-16 90.1 67 61.2
CAN.G1401.1 Capsicum annuum HOM05D007136 ORTHO05D008986 5.3e-16 89.4 65 53.8
CSS0010171 Camellia sinensis var. sinensis HOM05D007136 ORTHO05D008986 1.2e-15 88.2 67 59.7
Solyc06g043060.1 Solanum lycopersicum HOM05D007136 ORTHO05D008986 7.7e-15 85.5 67 52.2
FAN10G3057 Fragaria x ananassa HOM05D007136 ORTHO05D025577 3.2e-13 80.1 63 55.6
SHI07863 Sapria himalayana HOM05D007136 ORTHO05D008986 4.0e-11 73.2 64 56.2


User provided reference genes

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