Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s0313 Capsella rubella HOM05D004137 ORTHO05D004804 1.6e-35 152.1 73 100.0
BcaC05g29894 Brassica carinata HOM05D004137 ORTHO05D004804 8.8e-26 119.8 73 83.6
BolC5t34968H Brassica oleracea HOM05D004137 ORTHO05D004804 8.8e-26 119.8 73 83.6
BcaC05g30244 Brassica carinata HOM05D004137 ORTHO05D004804 1.5e-25 119.0 74 85.1
BcaC05g30291 Brassica carinata HOM05D004137 ORTHO05D004804 1.5e-25 119.0 74 85.1
A05p43490 Brassica napus HOM05D004137 ORTHO05D004804 1.5e-25 119.0 74 85.1
BraA05t23089Z Brassica rapa HOM05D004137 ORTHO05D004804 1.5e-25 119.0 74 85.1
Manes.08G144511 Manihot esculenta HOM05D004137 ORTHO05D004804 7.3e-12 73.6 59 61.0
Gohir.A12G175500 Gossypium hirsutum HOM05D004137 ORTHO05D004804 4.7e-11 70.9 59 59.3
Manes.09G141000 Manihot esculenta HOM05D004137 ORTHO05D004804 4.7e-11 70.9 59 59.3
Cpa.g.sc51.119 Carica papaya HOM05D004137 ORTHO05D004804 2.3e-10 68.6 59 55.9
Gohir.D12G178750 Gossypium hirsutum HOM05D004137 ORTHO05D004804 3.1e-10 68.2 59 57.6
Ciclev10023092m.g Citrus clementina HOM05D004137 ORTHO05D004804 4.0e-10 67.8 59 54.2
Gorai.008G191500 Gossypium raimondii HOM05D004137 ORTHO05D004804 5.2e-10 67.4 59 55.9
MD11G1003200 Malus domestica HOM05D004137 ORTHO05D004804 6.8e-10 67.0 58 53.4
TAR623G1005 Trochodendron aralioides HOM05D004137 ORTHO05D004804 6.8e-10 67.0 59 57.6
Nn7g35858 Nelumbo nucifera HOM05D004137 ORTHO05D004804 8.9e-10 66.6 59 55.9
Potri.013G057832 Populus trichocarpa HOM05D004137 ORTHO05D004804 8.9e-10 66.6 59 54.2
Ah.13g075420 Amaranthus hybridus HOM05D004137 ORTHO05D004804 2.0e-09 65.5 59 49.2
Lsat_1_v5_gn_1_59720 Lactuca sativa HOM05D004137 ORTHO05D004804 2.0e-09 65.5 59 50.8
MD03G1003400 Malus domestica HOM05D004137 ORTHO05D004804 2.6e-09 65.1 58 51.7
QL01p003617 Quercus lobata HOM05D004137 ORTHO05D004804 7.5e-09 63.5 58 51.7
Cc06_g23020 Coffea canephora HOM05D004137 ORTHO05D004804 9.8e-09 63.2 59 52.5
Prupe.6G003100 Prunus persica HOM05D004137 ORTHO05D004804 9.8e-09 63.2 58 50.0
Potri.013G057766 Populus trichocarpa HOM05D004137 ORTHO05D004804 1.3e-08 62.8 59 52.5
CAN.G960.46 Capsicum annuum HOM05D004137 ORTHO05D004804 2.2e-08 62.0 59 49.2
CSS0017288 Camellia sinensis var. sinensis HOM05D004137 ORTHO05D004804 6.4e-08 60.5 58 48.3
Nn2g15861 Nelumbo nucifera HOM05D004137 ORTHO05D004804 6.4e-08 60.5 59 50.8
MELO3C026884.2 Cucumis melo HOM05D004137 ORTHO05D004804 8.3e-08 60.1 61 50.8
Lalb_Chr14g0364521 Lupinus albus HOM05D004137 ORTHO05D004804 8.3e-08 60.1 57 50.9
Solyc10g078570.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 8.3e-08 60.1 59 47.5
PGSC0003DMG400008382 Solanum tuberosum HOM05D004137 ORTHO05D004804 8.3e-08 60.1 59 47.5
CiPaw.09G002200 Carya illinoinensis HOM05D004137 ORTHO05D004804 1.1e-07 59.7 53 52.8
Migut.J01885 Erythranthe guttata HOM05D004137 ORTHO05D004804 1.1e-07 59.7 59 49.2
Haze_22939 Corylus avellana HOM05D004137 ORTHO05D004804 1.4e-07 59.3 58 48.3
CANSAT11G0501 Cannabis sativa HOM05D004137 ORTHO05D004804 2.4e-07 58.5 58 48.3
Cfa016445 Carpinus fangiana HOM05D001721 ORTHO05D001804 3.2e-07 58.2 52 53.8
Haze_19423 Corylus avellana HOM05D004137 ORTHO05D004804 3.2e-07 58.2 52 53.8
ClCG10G013400 Citrullus lanatus HOM05D004137 ORTHO05D004804 4.1e-07 57.8 58 53.4
Prupe.7G004500 Prunus persica HOM05D004137 ORTHO05D004804 4.1e-07 57.8 59 50.8
unitig_0.g1150 Utricularia gibba HOM05D004137 ORTHO05D004804 4.1e-07 57.8 58 48.3
Sed0004008 Sechium edule HOM05D004137 ORTHO05D004804 7.0e-07 57.0 61 47.5
Glyma.19G112300 Glycine max HOM05D004137 ORTHO05D004804 2.7e-06 55.1 57 47.4
vmacro20990 Vaccinium macrocarpon HOM05D004137 ORTHO05D004804 2.7e-06 55.1 59 45.8
Atru.chr3.2107 Acer truncatum HOM05D004137 ORTHO05D004804 6.0e-06 53.9 60 43.3
CiPaw.13G177400 Carya illinoinensis HOM05D004137 ORTHO05D004804 6.0e-06 53.9 58 46.6
FvH4_4g27600 Fragaria vesca HOM05D004137 ORTHO05D004804 7.8e-06 53.5 48 54.2
RcHm_v2.0_Chr5g0083831 Rosa chinensis HOM05D004137 ORTHO05D004804 7.8e-06 53.5 58 44.8


User provided reference genes

Program Settings