Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s0230 Capsella rubella HOM05D003592 ORTHO05D004208 6.2e-64 247.3 123 100.0
AT3G03150 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 1.5e-49 199.5 124 84.7
AL3G12760 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 8.1e-48 193.7 121 84.3
BolC5t35035H Brassica oleracea HOM05D003592 ORTHO05D004208 3.2e-44 181.8 120 80.0
Sp3g02190 Schrenkiella parvula HOM05D003592 ORTHO05D004208 9.3e-44 180.3 123 79.7
Aa31LG5G13630 Aethionema arabicum HOM05D003592 ORTHO05D004208 4.6e-43 177.9 125 77.6
C05p63660 Brassica napus HOM05D003592 ORTHO05D004208 7.9e-43 177.2 121 79.3
BcaC05g30524 Brassica carinata HOM05D003592 ORTHO05D004208 1.0e-42 176.8 122 78.7
A05p44040 Brassica napus HOM05D003592 ORTHO05D004208 6.7e-42 174.1 120 77.5
BraSC90t46707Z Brassica rapa HOM05D003592 ORTHO05D004208 6.7e-42 174.1 120 77.5
CARHR077170 Cardamine hirsuta HOM05D003592 ORTHO05D004208 1.5e-41 172.9 123 78.0
BcaB04g19374 Brassica carinata HOM05D003592 ORTHO05D004208 9.6e-41 170.2 120 78.3
Thhalv10021768m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 9.6e-41 170.2 126 74.6
BcaC01g04411 Brassica carinata HOM05D003592 ORTHO05D004208 2.1e-40 169.1 120 76.7
A03p33220 Brassica napus HOM05D003592 ORTHO05D004208 2.1e-40 169.1 120 75.0
BraA03t12494Z Brassica rapa HOM05D003592 ORTHO05D004208 2.8e-40 168.7 120 75.0
C03p40480 Brassica napus HOM05D003592 ORTHO05D004208 4.8e-40 167.9 120 74.2
BolC3t16311H Brassica oleracea HOM05D003592 ORTHO05D004208 4.8e-40 167.9 120 74.2
AT5G17165 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 3.4e-30 135.2 116 59.5
CARHR196060 Cardamine hirsuta HOM05D003592 ORTHO05D004208 4.5e-30 134.8 121 57.9
AL6G28210 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 1.0e-29 133.7 119 58.8
BcaB08g36801 Brassica carinata HOM05D003592 ORTHO05D004208 1.0e-29 133.7 120 58.3
Sp6g27060 Schrenkiella parvula HOM05D003592 ORTHO05D004208 3.5e-27 125.2 119 55.5
THA.LOC104827220 Tarenaya hassleriana HOM05D003592 ORTHO05D004208 3.5e-27 125.2 125 60.0
A10p22230 Brassica napus HOM05D003592 ORTHO05D004208 1.0e-26 123.6 127 55.1
BraA10t44282Z Brassica rapa HOM05D003592 ORTHO05D004208 1.0e-26 123.6 127 55.1
BolC9t58839H Brassica oleracea HOM05D003592 ORTHO05D004208 3.0e-26 122.1 127 55.1
BcaC04g18828 Brassica carinata HOM05D003592 ORTHO05D004208 1.1e-25 120.2 127 54.3
Carub.0006s1535 Capsella rubella HOM05D003592 ORTHO05D004208 2.5e-25 119.0 104 55.8
TWI32G0722 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 2.5e-25 119.0 104 56.7
COL.COLO4_08909 Corchorus olitorius HOM05D003592 ORTHO05D004208 1.8e-23 112.8 124 46.0
Potri.013G081700 Populus trichocarpa HOM05D003592 ORTHO05D004208 4.1e-23 111.7 116 52.6
Thecc.05G207700 Theobroma cacao HOM05D003592 ORTHO05D004208 5.3e-23 111.3 126 46.8
Atru.chr12.2033 Acer truncatum HOM05D003592 ORTHO05D004208 9.0e-23 110.5 113 51.3
Duzib106G0206 Durio zibethinus HOM05D003592 ORTHO05D004208 2.0e-22 109.4 121 47.9
Duzib177G0010 Durio zibethinus HOM05D003592 ORTHO05D004208 2.0e-22 109.4 91 57.1
Cpa.g.sc39.41 Carica papaya HOM05D003592 ORTHO05D004208 5.9e-22 107.8 118 49.2
Gorai.003G051000 Gossypium raimondii HOM05D003592 ORTHO05D004208 7.6e-22 107.5 100 51.0
Gohir.D03G049600 Gossypium hirsutum HOM05D003592 ORTHO05D004208 1.0e-21 107.1 100 51.0
Gohir.A02G139000 Gossypium hirsutum HOM05D003592 ORTHO05D004208 1.7e-21 106.3 100 50.0
Ciclev10013115m.g Citrus clementina HOM05D003592 ORTHO05D004208 3.8e-21 105.1 126 47.6
TWI34G2026 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 8.5e-21 104.0 112 50.9
Manes.08G164900 Manihot esculenta HOM05D003592 ORTHO05D004208 1.9e-20 102.8 103 53.4
Manes.09G123900 Manihot esculenta HOM05D003592 ORTHO05D004208 4.2e-20 101.7 101 52.5
Thhalv10017419m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 5.5e-20 101.3 113 48.7
Sabra13G0071400 Salix brachista HOM05D003592 ORTHO05D004208 5.5e-20 101.3 91 53.8
Eucgr.A02954 Eucalyptus grandis HOM05D003592 ORTHO05D004208 7.2e-20 100.9 93 55.9
Eucgr.L03660 Eucalyptus grandis HOM05D003592 ORTHO05D004208 1.2e-19 100.1 98 53.1
GSVIVG01024455001 Vitis vinifera HOM05D003592 ORTHO05D004208 1.6e-19 99.8 83 56.6
Eucgr.A02956 Eucalyptus grandis HOM05D003592 ORTHO05D004208 2.7e-19 99.0 88 54.5
C09p60040 Brassica napus HOM05D003592 ORTHO05D004208 3.6e-19 98.6 115 51.3
Duzib128G1398 Durio zibethinus HOM05D003592 ORTHO05D004208 3.6e-19 98.6 110 49.1
Ca_24466_v3 Cicer arietinum L. HOM05D003592 ORTHO05D004208 6.1e-19 97.8 122 46.7
Prupe.2G323400 Prunus persica HOM05D003592 ORTHO05D004208 6.1e-19 97.8 110 47.3
MD07G1305300 Malus domestica HOM05D003592 ORTHO05D004208 1.0e-18 97.1 110 47.3
FAN01G2998 Fragaria x ananassa HOM05D003592 ORTHO05D004208 3.9e-18 95.1 125 40.8
MD01G1233000 Malus domestica HOM05D003592 ORTHO05D004208 3.9e-18 95.1 89 51.7
MELO3C017620.2 Cucumis melo HOM05D003592 ORTHO05D004208 5.1e-18 94.7 89 56.2
CsaV3_4G004470 Cucumis sativus L. HOM05D003592 ORTHO05D004208 5.1e-18 94.7 90 53.3
PGR042G3489 Punica granatum HOM05D003592 ORTHO05D004208 5.1e-18 94.7 113 45.1
FvH4_7g33540 Fragaria vesca HOM05D003592 ORTHO05D004208 1.5e-17 93.2 124 41.1
ClCG07G017260 Citrullus lanatus HOM05D003592 ORTHO05D004208 1.9e-17 92.8 88 53.4
FAN03G1827 Fragaria x ananassa HOM05D003592 ORTHO05D004208 2.5e-17 92.4 101 46.5
FAN10G0119 Fragaria x ananassa HOM05D003592 ORTHO05D004208 3.3e-17 92.0 124 39.5
FAN10G2200 Fragaria x ananassa HOM05D003592 ORTHO05D004208 3.3e-17 92.0 124 39.5
MBI04_g29825_MAGBIO Magnolia biondii HOM05D000463 ORTHO05D013433 4.3e-17 91.7 108 48.1
RcHm_v2.0_Chr1g0383761 Rosa chinensis HOM05D003592 ORTHO05D004208 4.3e-17 91.7 102 46.1
TPR.G37953 Trifolium pratense HOM05D003592 ORTHO05D004208 4.3e-17 91.7 110 47.3
Haze_00584 Corylus avellana HOM05D003592 ORTHO05D004208 5.7e-17 91.3 112 46.4
Glyma.01G230200 Glycine max HOM05D003592 ORTHO05D004208 5.7e-17 91.3 99 49.5
Sed0022386 Sechium edule HOM05D003592 ORTHO05D004208 5.7e-17 91.3 93 53.8
MBI04_g21153_MAGBIO Magnolia biondii HOM05D003592 ORTHO05D004208 7.4e-17 90.9 107 47.7
CANSAT21G0974 Cannabis sativa HOM05D003592 ORTHO05D004208 1.7e-16 89.7 86 47.7
CiPaw.05G236400 Carya illinoinensis HOM05D003592 ORTHO05D004208 1.7e-16 89.7 96 50.0
Medtr5g008210 Medicago truncatula HOM05D003592 ORTHO05D004208 1.7e-16 89.7 118 43.2
arahy.Tifrunner.gnm1.ann1.F45BIC Arachis hypogaea HOM05D003592 ORTHO05D004208 2.2e-16 89.4 92 51.1
Cfa015910 Carpinus fangiana HOM05D003592 ORTHO05D004208 2.2e-16 89.4 88 51.1
Nitab4.5_0000021g0300 Nicotiana tabacum HOM05D003592 ORTHO05D004208 2.8e-16 89.0 115 47.0
arahy.Tifrunner.gnm1.ann1.I6057L Arachis hypogaea HOM05D003592 ORTHO05D004208 3.7e-16 88.6 90 52.2
CSS0031198 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 3.7e-16 88.6 87 51.7
Nitab4.5_0002302g0040 Nicotiana tabacum HOM05D003592 ORTHO05D004208 3.7e-16 88.6 118 46.6
PGSC0003DMG400026933 Solanum tuberosum HOM05D003592 ORTHO05D004208 3.7e-16 88.6 108 47.2
MSTRG.14 Avicennia marina HOM05D003592 ORTHO05D004208 4.8e-16 88.2 108 47.2
CDE01G0008 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 4.8e-16 88.2 89 49.4
Psat2g187520 Pisum sativum HOM05D003592 ORTHO05D004208 4.8e-16 88.2 118 47.5
Sed0007086 Sechium edule HOM05D003592 ORTHO05D004208 4.8e-16 88.2 112 47.3
ATR0829G020 Amborella trichopoda HOM05D003592 ORTHO05D004208 6.3e-16 87.8 92 48.9
Phvul.002G036900 Phaseolus vulgaris HOM05D003592 ORTHO05D004208 6.3e-16 87.8 88 53.4
VMungo1215G0435 Vigna mungo HOM05D003592 ORTHO05D004208 6.3e-16 87.8 85 55.3
Aqoxy161s001 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 8.2e-16 87.4 100 48.0
Aqoxy161s002 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 8.2e-16 87.4 100 48.0
Aqoxy3G02065 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 8.2e-16 87.4 100 48.0
Aqoxy3G02066 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 8.2e-16 87.4 100 48.0
Actinidia08730 Actinidia chinensis HOM05D003592 ORTHO05D004208 1.1e-15 87.0 109 51.4
Oeu038117.1 Olea europaea HOM05D003592 ORTHO05D004208 1.1e-15 87.0 89 50.6
TAR629G1675 Trochodendron aralioides HOM05D003592 ORTHO05D004208 2.4e-15 85.9 99 47.5
CDE12G0763 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 3.1e-15 85.5 86 47.7
AUR62005925 Chenopodium quinoa HOM05D003592 ORTHO05D004208 3.1e-15 85.5 117 41.9
Dinv29178 Davidia involucrata HOM05D003592 ORTHO05D004208 3.1e-15 85.5 88 50.0
Rhsim09G0211800 Rhododendron simsii HOM05D003592 ORTHO05D004208 3.1e-15 85.5 84 53.6
Oeu061060.1 Olea europaea HOM05D003592 ORTHO05D004208 4.1e-15 85.1 87 49.4
Sed0014997 Sechium edule HOM05D003592 ORTHO05D004208 4.1e-15 85.1 96 43.8
AUR62018884 Chenopodium quinoa HOM05D003592 ORTHO05D004208 5.3e-15 84.7 117 41.0
Migut.F00955 Erythranthe guttata HOM05D003592 ORTHO05D004208 5.3e-15 84.7 107 48.6
Sc19g0000280 Simmondsia chinensis HOM05D003592 ORTHO05D004208 5.3e-15 84.7 98 49.0
Actinidia34296 Actinidia chinensis HOM05D003592 ORTHO05D004208 6.9e-15 84.3 110 46.4
vmacro06490 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 6.9e-15 84.3 89 52.8
vmacro10180 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 6.9e-15 84.3 89 51.7
LjContig00222g0008170 Lotus japonicus HOM05D003592 ORTHO05D004208 9.1e-15 84.0 106 49.1
SalBow2G2852 Salvia bowleyana HOM05D003592 ORTHO05D004208 1.2e-14 83.6 94 46.8
Migut.F00107 Erythranthe guttata HOM05D003592 ORTHO05D004208 2.0e-14 82.8 81 55.6
CiPaw.06G020500 Carya illinoinensis HOM05D003592 ORTHO05D004208 2.6e-14 82.4 127 39.4
Glyma.11G013200 Glycine max HOM05D003592 ORTHO05D004208 2.6e-14 82.4 91 52.7
PGSC0003DMG400000541 Solanum tuberosum HOM05D003592 ORTHO05D004208 2.6e-14 82.4 111 44.1
ClCG01G004940 Citrullus lanatus HOM05D003592 ORTHO05D004208 3.4e-14 82.0 107 42.1
MELO3C005442.2 Cucumis melo HOM05D003592 ORTHO05D004208 3.4e-14 82.0 127 41.7
Sc13g0010720 Simmondsia chinensis HOM05D003592 ORTHO05D004208 3.4e-14 82.0 98 49.0
Sopen03g027580 Solanum pennellii HOM05D003592 ORTHO05D004208 4.5e-14 81.6 111 45.9
QL09p026459 Quercus lobata HOM05D003592 ORTHO05D004208 5.9e-14 81.3 101 44.6
Peaxi162Scf01650g00057 Petunia axillaris HOM05D003592 ORTHO05D004208 7.7e-14 80.9 110 45.5
Rhsim03G0219900 Rhododendron simsii HOM05D003592 ORTHO05D004208 7.7e-14 80.9 90 48.9
EL10Ac3g05109 Beta vulgaris HOM05D003592 ORTHO05D004208 1.0e-13 80.5 117 43.6
DCAR_010550 Daucus carota HOM05D003592 ORTHO05D004208 1.0e-13 80.5 121 41.3
Eucgr.K00100 Eucalyptus grandis HOM05D003592 ORTHO05D004208 1.0e-13 80.5 113 38.9
Hma1.2p1_1235F.1_g269160 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 1.0e-13 80.5 91 50.5
Oeu055446.1 Olea europaea HOM05D003592 ORTHO05D004208 1.0e-13 80.5 94 50.0
Cc02_g00450 Coffea canephora HOM05D003592 ORTHO05D004208 1.3e-13 80.1 88 50.0
Cc05_g00720 Coffea canephora HOM05D003592 ORTHO05D004208 1.3e-13 80.1 88 50.0
Sopen06g029220 Solanum pennellii HOM05D003592 ORTHO05D004208 1.3e-13 80.1 86 53.5
Ah.13g071180 Amaranthus hybridus HOM05D003592 ORTHO05D004208 1.7e-13 79.7 112 42.0
Dinv17270 Davidia involucrata HOM05D003592 ORTHO05D004208 1.7e-13 79.7 103 43.7
Lsat_1_v5_gn_0_9420 Lactuca sativa HOM05D003592 ORTHO05D004208 1.7e-13 79.7 107 44.9
Solyc03g096840.4 Solanum lycopersicum HOM05D003592 ORTHO05D004208 1.7e-13 79.7 109 45.0
Solyc06g072840.3 Solanum lycopersicum HOM05D003592 ORTHO05D004208 1.7e-13 79.7 86 53.5
Ah.04g157330 Amaranthus hybridus HOM05D003592 ORTHO05D004208 2.2e-13 79.3 94 45.7
unitig_62.g23842 Utricularia gibba HOM05D003592 ORTHO05D004208 2.2e-13 79.3 82 53.7
MSTRG.26939 Avicennia marina HOM05D003592 ORTHO05D004208 2.9e-13 79.0 78 50.0
SGA_v2.0_scaffold18G08501 Striga asiatica HOM05D003592 ORTHO05D004208 3.8e-13 78.6 89 44.9
Actinidia28268 Actinidia chinensis HOM05D003592 ORTHO05D004208 5.0e-13 78.2 84 50.0
MSTRG.8553 Avicennia marina HOM05D003592 ORTHO05D004208 5.0e-13 78.2 106 48.1
CSS0018534 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 5.0e-13 78.2 91 45.1
CsaV3_5G005170 Cucumis sativus L. HOM05D003592 ORTHO05D004208 5.0e-13 78.2 88 46.6
CAN.G303.68 Capsicum annuum HOM05D003592 ORTHO05D004208 6.5e-13 77.8 108 42.6
HanXRQChr02g0041191 Helianthus annuus HOM05D003592 ORTHO05D004208 8.5e-13 77.4 119 43.7
AUR62028136 Chenopodium quinoa HOM05D003592 ORTHO05D004208 1.1e-12 77.0 82 46.3
PGR142G3032 Punica granatum HOM05D003592 ORTHO05D004208 1.4e-12 76.6 100 45.0
Oeu063742.2 Olea europaea HOM05D003592 ORTHO05D004208 2.5e-12 75.9 123 40.7
Os04g0598000 Oryza sativa ssp. japonica HOM05D003592 ORTHO05D004208 2.5e-12 75.9 126 41.3
Actinidia18695 Actinidia chinensis HOM05D003592 ORTHO05D004208 7.2e-12 74.3 110 40.9
Zm00001eb430170 Zea mays HOM05D003592 ORTHO05D004208 9.4e-12 73.9 126 37.3
Sed0022343 Sechium edule HOM05D003592 ORTHO05D004208 1.6e-11 73.2 105 42.9
HPP92_020881 Vanilla planifolia HOM05D003592 ORTHO05D004208 1.6e-11 73.2 108 38.0
HPP92_020885 Vanilla planifolia HOM05D003592 ORTHO05D004208 1.6e-11 73.2 108 38.0
Nn1g02028 Nelumbo nucifera HOM05D003592 ORTHO05D004208 2.1e-11 72.8 54 63.0
Peaxi162Scf00133g00111 Petunia axillaris HOM05D003592 ORTHO05D004208 3.6e-11 72.0 105 43.8
SEGI_20020 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 3.6e-11 72.0 87 44.8
TAR375G0874 Trochodendron aralioides HOM05D003592 ORTHO05D004208 4.7e-11 71.6 79 45.6
Hund09766 Selenicereus undatus HOM05D003592 ORTHO05D004208 6.1e-11 71.2 103 45.6
SGA_v2.0_scaffold165G38224 Striga asiatica HOM05D003592 ORTHO05D004208 7.9e-11 70.9 101 44.6
Nitab4.5_0000115g0310 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.0e-10 70.5 105 42.9
Nitab4.5_0006270g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.0e-10 70.5 88 52.3
Peaxi162Scf00815g00235 Petunia axillaris HOM05D003592 ORTHO05D004208 1.0e-10 70.5 104 46.2
Hund21085 Selenicereus undatus HOM05D003592 ORTHO05D004208 1.0e-10 70.5 92 43.5
SEGI_37277 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 1.0e-10 70.5 83 45.8
Peaxi162Scf00815g00250 Petunia axillaris HOM05D003592 ORTHO05D004208 1.4e-10 70.1 101 40.6
CDE11G0498 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 3.0e-10 68.9 94 44.7
HanXRQChr09g0257211 Helianthus annuus HOM05D003592 ORTHO05D004208 3.9e-10 68.6 101 39.6
Hma1.2p1_0758F.1_g213540 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 3.9e-10 68.6 86 41.9
Nn3g19269 Nelumbo nucifera HOM05D003592 ORTHO05D004208 6.7e-10 67.8 104 40.4
Solyc06g072845.1 Solanum lycopersicum HOM05D003592 ORTHO05D004208 1.5e-09 66.6 98 43.9
PSO063G2386 Papaver somniferum HOM05D003592 ORTHO05D004208 2.6e-09 65.9 103 36.9
Nitab4.5_0003012g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 5.7e-09 64.7 90 43.3
unitig_0.g1634 Utricularia gibba HOM05D003592 ORTHO05D004208 9.7e-09 63.9 102 43.1
Sopen06g029230 Solanum pennellii HOM05D003592 ORTHO05D004208 1.7e-08 63.2 101 44.6
HPP92_014744 Vanilla planifolia HOM05D003592 ORTHO05D004208 1.7e-08 63.2 105 38.1
Actinidia08732 Actinidia chinensis HOM05D003592 ORTHO05D004208 2.2e-08 62.8 44 59.1
ECA232G0247 Erigeron canadensis HOM05D003592 ORTHO05D004208 2.2e-08 62.8 113 38.9
Nitab4.5_0000115g0330 Nicotiana tabacum HOM05D003592 ORTHO05D004208 2.8e-08 62.4 89 47.2
PGSC0003DMG400027031 Solanum tuberosum HOM05D003592 ORTHO05D004208 3.7e-08 62.0 102 46.1
CDE02G0247 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 8.2e-08 60.8 105 41.0
PSO170G2965 Papaver somniferum HOM05D003592 ORTHO05D004208 1.4e-07 60.1 103 35.9
HPP92_014706 Vanilla planifolia HOM05D003592 ORTHO05D004208 4.1e-07 58.5 115 33.0
SEGI_00089 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 5.3e-07 58.2 98 35.7
HanXRQChr05g0137871 Helianthus annuus HOM05D003592 ORTHO05D029303 7.7e-06 54.3 93 35.5


User provided reference genes

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